Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig1-114E04
        

               Conread position:
               1-146
               

               Cow position:
               chr1:64189349-64189485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               1-172
               

               Cow position:
               chr1:20422356-20422189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               154, 69
               

               Conread position:
               1-264
               

               Cow position:
               chr1:67994983-67995246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               49, 17
               

               Conread position:
               1-271
               

               Cow position:
               chr1:6881374-6881099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               40, 71
               

               Conread position:
               1-285
               

               Cow position:
               chr1:61661458-61661174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               41, 105
               

               Conread position:
               2-256
               

               Cow position:
               chr1:3657509-3657243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               44, 62
               

               Conread position:
               4-264
               

               Cow position:
               chr1:56073606-56073343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 56
               

               Conread position:
               8-120
               

               Cow position:
               chr1:70236433-70236324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 64
               

               Conread position:
               8-120
               

               Cow position:
               chr1:74947266-74947159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               8-122
               

               Cow position:
               chr1:32244544-32244434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 60
               

               Conread position:
               8-129
               

               Cow position:
               chr1:50634545-50634428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-140
               

               Cow position:
               chr1:5061883-5062010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-197
               

               Cow position:
               chr1:29916263-29916452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               20, 64
               

               Conread position:
               8-233
               

               Cow position:
               chr1:92642586-92642347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               37, 64
               

               Conread position:
               8-249
               

               Cow position:
               chr1:6795073-6794809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               8-254
               

               Cow position:
               chr1:4175412-4175165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               123, 18
               

               Conread position:
               8-254
               

               Cow position:
               chr1:49131261-49131010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               39, 73
               

               Conread position:
               8-256
               

               Cow position:
               chr1:13195564-13195310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr1:56643730-56643481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               134, 35
               

               Conread position:
               8-256
               

               Cow position:
               chr1:97603748-97603516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               175, 18
               

               Conread position:
               8-266
               

               Cow position:
               chr1:9869992-9869728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-266
               

               Cow position:
               chr1:97619980-97619722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 60
               

               Conread position:
               8-268
               

               Cow position:
               chr1:67407335-67407068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               36, 150
               

               Conread position:
               8-271
               

               Cow position:
               chr1:78750831-78750561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-275
               

               Cow position:
               chr1:73363812-73363544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 64
               

               Conread position:
               9-120
               

               Cow position:
               chr1:51836427-51836534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               94
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               9-257
               

               Cow position:
               chr1:25183989-25184235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               47, 67
               

               Conread position:
               10-238
               

               Cow position:
               chr1:29657686-29657924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               114, 57
               

               Conread position:
               11-236
               

               Cow position:
               chr1:80856189-80856427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               37, 95
               

               Conread position:
               12-276
               

               Cow position:
               chr1:4441243-4440979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               102, 58
               

               Conread position:
               14-129
               

               Cow position:
               chr1:76850866-76850753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               32, 58
               

               Conread position:
               14-266
               

               Cow position:
               chr1:71302992-71303244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               18-256
               

               Cow position:
               chr1:101771772-101772023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               76, 55
               

               Conread position:
               19-275
               

               Cow position:
               chr1:10467737-10467480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               167, 51
               

               Conread position:
               20-256
               

               Cow position:
               chr1:44746734-44746983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               26, 51
               

               Conread position:
               29-263
               

               Cow position:
               chr1:85651890-85651651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               17, 42
               

               Conread position:
               31-256
               

               Cow position:
               chr1:75998577-75998345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               97, 34
               

               Conread position:
               53-256
               

               Cow position:
               chr1:47117362-47117160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               76, 19
               

               Conread position:
               77-266
               

               Cow position:
               chr1:4239441-4239640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               48, 20
               

               Conread position:
               98-273
               

               Cow position:
               chr1:82455318-82455494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               51, 26
               

               Conread position:
               100-271
               

               Cow position:
               chr1:22488769-22488952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               36, 130
               

               Conread position:
               133-272
               

               Cow position:
               chr1:22738077-22737939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 70
               

               Conread position:
               143-263
               

               Cow position:
               chr1:3556105-3555985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               109, 101
               

               Conread position:
               146-254
               

               Cow position:
               chr1:5278402-5278293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               90
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               146-265
               

               Cow position:
               chr1:48255785-48255904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               95
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               151-265
               

               Cow position:
               chr1:72542101-72541988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               151-275
               

               Cow position:
               chr1:71826237-71826112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               152-273
               

               Cow position:
               chr1:29184322-29184201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-236
               

               Cow position:
               chr10:23135150-23135385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               1-274
               

               Cow position:
               chr10:53821098-53820813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               44, 74
               

               Conread position:
               2-252
               

               Cow position:
               chr10:20110116-20109861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               2-256
               

               Cow position:
               chr10:6568059-6568323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               44, 12
               

               Conread position:
               3-238
               

               Cow position:
               chr10:22977846-22977604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               8-121
               

               Cow position:
               chr10:50044823-50044714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               98
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-135
               

               Cow position:
               chr10:17699189-17699066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               28, 64
               

               Conread position:
               8-151
               

               Cow position:
               chr10:11032671-11032533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               21, 65
               

               Conread position:
               8-187
               

               Cow position:
               chr10:2394637-2394472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               40, 62
               

               Conread position:
               8-207
               

               Cow position:
               chr10:51925247-51925453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-226
               

               Cow position:
               chr10:7328557-7328774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               161, 38
               

               Conread position:
               8-242
               

               Cow position:
               chr10:46468861-46468616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               23, 64
               

               Conread position:
               8-252
               

               Cow position:
               chr10:16650098-16649840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               8-256
               

               Cow position:
               chr10:6012207-6011958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               35, 65
               

               Conread position:
               8-256
               

               Cow position:
               chr10:21424856-21424585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               8-257
               

               Cow position:
               chr10:8077321-8077066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-257
               

               Cow position:
               chr10:29689492-29689237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               121, 38
               

               Conread position:
               8-263
               

               Cow position:
               chr10:33002412-33002158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               8-264
               

               Cow position:
               chr10:14909401-14909666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               98, 34
               

               Conread position:
               8-264
               

               Cow position:
               chr10:25970948-25971194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 9
               

               Conread position:
               8-264
               

               Cow position:
               chr10:57458549-57458812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               116, 60
               

               Conread position:
               8-270
               

               Cow position:
               chr10:9341906-9341626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               114, 62
               

               Conread position:
               8-273
               

               Cow position:
               chr10:46491211-46490951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               8-276
               

               Cow position:
               chr10:39314539-39314813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               208
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               38, 16
               

               Conread position:
               8-278
               

               Cow position:
               chr10:25978451-25978178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 18
               

               Conread position:
               8-278
               

               Cow position:
               chr10:38772358-38772613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               39, 73
               

               Conread position:
               8-292
               

               Cow position:
               chr10:31910767-31911049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               9-254
               

               Cow position:
               chr10:38429716-38429458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               9-273
               

               Cow position:
               chr10:20568966-20569232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 64
               

               Conread position:
               10-264
               

               Cow position:
               chr10:65791666-65791915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               10-276
               

               Cow position:
               chr10:10753229-10752955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               10-276
               

               Cow position:
               chr10:16432474-16432206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               31, 63
               

               Conread position:
               11-146
               

               Cow position:
               chr10:19127079-19126947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 57
               

               Conread position:
               14-256
               

               Cow position:
               chr10:30753034-30753267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               153, 32
               

               Conread position:
               18-259
               

               Cow position:
               chr10:58746403-58746152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 52
               

               Conread position:
               19-254
               

               Cow position:
               chr10:8760300-8760072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               19-256
               

               Cow position:
               chr10:68566051-68566273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               26-256
               

               Cow position:
               chr10:27576309-27576549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               20, 47
               

               Conread position:
               50-278
               

               Cow position:
               chr10:12290145-12290375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               74, 21
               

               Conread position:
               56-271
               

               Cow position:
               chr10:48135491-48135277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               69, 16
               

               Conread position:
               73-259
               

               Cow position:
               chr10:50603086-50602889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 22
               

               Conread position:
               140-264
               

               Cow position:
               chr10:54559524-54559647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               153-261
               

               Cow position:
               chr10:39011754-39011648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               153-265
               

               Cow position:
               chr10:20822651-20822762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               1-121
               

               Cow position:
               chr11:8828802-8828689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-221
               

               Cow position:
               chr11:4610008-4609776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 73
               

               Conread position:
               1-256
               

               Cow position:
               chr11:75255262-75255504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               46, 17
               

               Conread position:
               1-264
               

               Cow position:
               chr11:47169180-47168909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 78
               

               Conread position:
               3-257
               

               Cow position:
               chr11:9253195-9252927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               18, 94
               

               Conread position:
               3-281
               

               Cow position:
               chr11:46001856-46001571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               212
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               43, 254
               

               Conread position:
               4-261
               

               Cow position:
               chr11:17964122-17963863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               42, 21
               

               Conread position:
               8-122
               

               Cow position:
               chr11:50951386-50951496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-135
               

               Cow position:
               chr11:53452516-53452394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               32, 63
               

               Conread position:
               8-154
               

               Cow position:
               chr11:876932-877073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               8-174
               

               Cow position:
               chr11:64845481-64845651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               33, 27
               

               Conread position:
               8-207
               

               Cow position:
               chr11:76395616-76395823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               38, 24
               

               Conread position:
               8-232
               

               Cow position:
               chr11:64589452-64589230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               116, 5
               

               Conread position:
               8-237
               

               Cow position:
               chr11:63157077-63156836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               8-238
               

               Cow position:
               chr11:32800168-32800402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               117, 60
               

               Conread position:
               8-253
               

               Cow position:
               chr11:14941750-14941513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               116, 30
               

               Conread position:
               8-254
               

               Cow position:
               chr11:19269242-19268994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               8-256
               

               Cow position:
               chr11:16000759-16001026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr11:20491403-20491668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr11:24967289-24967542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               113, 38
               

               Conread position:
               8-262
               

               Cow position:
               chr11:80012007-80011743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               8-263
               

               Cow position:
               chr11:38009978-38009715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               206
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               120, 62
               

               Conread position:
               8-264
               

               Cow position:
               chr11:47903685-47903951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               8-269
               

               Cow position:
               chr11:11460323-11460585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-270
               

               Cow position:
               chr11:42519573-42519847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               37, 43
               

               Conread position:
               8-271
               

               Cow position:
               chr11:2908603-2908881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-271
               

               Cow position:
               chr11:73473938-73473684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               9-256
               

               Cow position:
               chr11:67236244-67236500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               123, 37
               

               Conread position:
               9-264
               

               Cow position:
               chr11:65694001-65693750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               10-256
               

               Cow position:
               chr11:13039307-13039080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               168, 46
               

               Conread position:
               10-271
               

               Cow position:
               chr11:75242480-75242753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               14-256
               

               Cow position:
               chr11:2394224-2393989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 58
               

               Conread position:
               23-266
               

               Cow position:
               chr11:4115211-4114960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               24, 49
               

               Conread position:
               29-283
               

               Cow position:
               chr11:13690444-13690209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 38
               

               Conread position:
               35-253
               

               Cow position:
               chr11:51745214-51745444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               6, 38
               

               Conread position:
               35-259
               

               Cow position:
               chr11:23047882-23047661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               106, 11
               

               Conread position:
               40-269
               

               Cow position:
               chr11:51389653-51389437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               83-263
               

               Cow position:
               chr11:57831642-57831456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               50, 14
               

               Conread position:
               137-266
               

               Cow position:
               chr11:2367020-2366893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               138-265
               

               Cow position:
               chr11:27424558-27424431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               138-273
               

               Cow position:
               chr11:31354683-31354820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               125, 111
               

               Conread position:
               144-279
               

               Cow position:
               chr11:46485307-46485444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               119, 45
               

               Conread position:
               145-264
               

               Cow position:
               chr11:69824225-69824106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-275
               

               Cow position:
               chr11:39274328-39274200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               145-276
               

               Cow position:
               chr11:36653103-36652972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 49
               

               Conread position:
               151-269
               

               Cow position:
               chr11:46024710-46024593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               151-273
               

               Cow position:
               chr11:55610338-55610459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr12:44905451-44905690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               120, 10
               

               Conread position:
               1-256
               

               Cow position:
               chr12:23379378-23379651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 72
               

               Conread position:
               1-264
               

               Cow position:
               chr12:3757235-3756960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               9, 74
               

               Conread position:
               1-264
               

               Cow position:
               chr12:21861981-21861720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               1-265
               

               Cow position:
               chr12:44832744-44833010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               110, 50
               

               Conread position:
               2-190
               

               Cow position:
               chr12:6117708-6117887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               39, 67
               

               Conread position:
               2-270
               

               Cow position:
               chr12:34850034-34849763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               95, 53
               

               Conread position:
               2-270
               

               Cow position:
               chr12:34852673-34852400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               95, 79
               

               Conread position:
               4-267
               

               Cow position:
               chr12:30688150-30688424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               8-122
               

               Cow position:
               chr12:18769262-18769152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               8-134
               

               Cow position:
               chr12:16851197-16851076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               8-146
               

               Cow position:
               chr12:35807493-35807624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               8-239
               

               Cow position:
               chr12:41979488-41979251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               8-253
               

               Cow position:
               chr12:35984947-35985181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               37, 66
               

               Conread position:
               8-256
               

               Cow position:
               chr12:12939114-12938886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               8-256
               

               Cow position:
               chr12:21828900-21829152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               25, 64
               

               Conread position:
               8-256
               

               Cow position:
               chr12:25312560-25312294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               36, 66
               

               Conread position:
               8-256
               

               Cow position:
               chr12:30064759-30065014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 65
               

               Conread position:
               8-262
               

               Cow position:
               chr12:27495821-27496086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               37, 66
               

               Conread position:
               8-269
               

               Cow position:
               chr12:15622639-15622382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 93
               

               Conread position:
               10-136
               

               Cow position:
               chr12:1223531-1223408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               36, 70
               

               Conread position:
               10-262
               

               Cow position:
               chr12:35718247-35718005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               31, 53
               

               Conread position:
               11-269
               

               Cow position:
               chr12:45541548-45541800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               172, 61
               

               Conread position:
               12-270
               

               Cow position:
               chr12:794366-794619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               28, 143
               

               Conread position:
               14-273
               

               Cow position:
               chr12:3212144-3212414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               22, 60
               

               Conread position:
               27-255
               

               Cow position:
               chr12:47064027-47063799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 74
               

               Conread position:
               31-281
               

               Cow position:
               chr12:30423020-30422766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               10, 49
               

               Conread position:
               40-281
               

               Cow position:
               chr12:3134651-3134400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               80, 33
               

               Conread position:
               41-272
               

               Cow position:
               chr12:1357580-1357344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               91, 38
               

               Conread position:
               59-273
               

               Cow position:
               chr12:13624838-13624625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               67, 13
               

               Conread position:
               70-261
               

               Cow position:
               chr12:4948691-4948494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               21, 12
               

               Conread position:
               135-273
               

               Cow position:
               chr12:7055650-7055790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               146-256
               

               Cow position:
               chr12:29691228-29691117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               146-277
               

               Cow position:
               chr12:23957115-23957244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               1-256
               

               Cow position:
               chr13:46501448-46501189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               17, 76
               

               Conread position:
               1-256
               

               Cow position:
               chr13:54864890-54865139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               44, 70
               

               Conread position:
               1-269
               

               Cow position:
               chr13:35718999-35719283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               45, 71
               

               Conread position:
               1-271
               

               Cow position:
               chr13:23816612-23816858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               40, 17
               

               Conread position:
               2-264
               

               Cow position:
               chr13:55843624-55843345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               39, 96
               

               Conread position:
               2-273
               

               Cow position:
               chr13:46298503-46298778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               11, 73
               

               Conread position:
               4-120
               

               Cow position:
               chr13:9803210-9803097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               42, 70
               

               Conread position:
               5-271
               

               Cow position:
               chr13:3796279-3795996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               36, 65
               

               Conread position:
               7-122
               

               Cow position:
               chr13:39699940-39699833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               8-120
               

               Cow position:
               chr13:24767520-24767413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-122
               

               Cow position:
               chr13:661502-661616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               33, 88
               

               Conread position:
               8-122
               

               Cow position:
               chr13:37558414-37558306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               96
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               108, 33
               

               Conread position:
               8-172
               

               Cow position:
               chr13:20057321-20057488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               49, 15
               

               Conread position:
               8-252
               

               Cow position:
               chr13:6945503-6945248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-255
               

               Cow position:
               chr13:33975552-33975299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               35, 65
               

               Conread position:
               8-256
               

               Cow position:
               chr13:6621465-6621723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               91, 47
               

               Conread position:
               8-256
               

               Cow position:
               chr13:12521643-12521911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               8-256
               

               Cow position:
               chr13:17346940-17346677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr13:26508599-26508351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               27, 67
               

               Conread position:
               8-256
               

               Cow position:
               chr13:32167170-32167443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 255
               

               Conread position:
               8-262
               

               Cow position:
               chr13:24539627-24539371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               38, 73
               

               Conread position:
               8-263
               

               Cow position:
               chr13:11290686-11290922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               42, 38
               

               Conread position:
               8-264
               

               Cow position:
               chr13:61043895-61043648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               117, 37
               

               Conread position:
               8-265
               

               Cow position:
               chr13:20834722-20834984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               8-265
               

               Cow position:
               chr13:35653957-35654231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               8-269
               

               Cow position:
               chr13:32717740-32718009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               116, 38
               

               Conread position:
               8-273
               

               Cow position:
               chr13:41359884-41359615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               38, 68
               

               Conread position:
               8-276
               

               Cow position:
               chr13:58823853-58823592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               9-254
               

               Cow position:
               chr13:2302706-2302943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 64
               

               Conread position:
               10-190
               

               Cow position:
               chr13:6759660-6759829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               11-274
               

               Cow position:
               chr13:6335472-6335721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               40, 62
               

               Conread position:
               40-269
               

               Cow position:
               chr13:59982540-59982761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               105, 31
               

               Conread position:
               43-238
               

               Cow position:
               chr13:48545246-48545444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               49-255
               

               Cow position:
               chr13:18551089-18550873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               29, 49
               

               Conread position:
               102-256
               

               Cow position:
               chr13:32904813-32904646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               142-264
               

               Cow position:
               chr13:15170655-15170535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               145-264
               

               Cow position:
               chr13:57958326-57958445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-272
               

               Cow position:
               chr13:55740864-55740993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               146-269
               

               Cow position:
               chr13:54643739-54643617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               102
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               150-273
               

               Cow position:
               chr13:3784560-3784681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               151-267
               

               Cow position:
               chr13:17610895-17610780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               152-271
               

               Cow position:
               chr13:19683202-19683320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1-146
               

               Cow position:
               chr14:37678803-37678940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               1-256
               

               Cow position:
               chr14:37333889-37333623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               44, 9
               

               Conread position:
               4-252
               

               Cow position:
               chr14:18238337-18238090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               37, 65
               

               Conread position:
               8-122
               

               Cow position:
               chr14:21018305-21018195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               8-122
               

               Cow position:
               chr14:41654207-41654316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-135
               

               Cow position:
               chr14:34221247-34221126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-146
               

               Cow position:
               chr14:18448816-18448951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               8-169
               

               Cow position:
               chr14:12488507-12488659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               8-176
               

               Cow position:
               chr14:35711986-35712149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               38, 58
               

               Conread position:
               8-218
               

               Cow position:
               chr14:19888036-19888258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               8-226
               

               Cow position:
               chr14:26628026-26627809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr14:26448941-26448684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               29, 61
               

               Conread position:
               8-256
               

               Cow position:
               chr14:31399764-31399520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-256
               

               Cow position:
               chr14:46962729-46962475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               38, 67
               

               Conread position:
               8-257
               

               Cow position:
               chr14:43565711-43565955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               8-260
               

               Cow position:
               chr14:1706467-1706218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               8-269
               

               Cow position:
               chr14:8766900-8766614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               8-269
               

               Cow position:
               chr14:12602069-12601798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               207
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               38, 71
               

               Conread position:
               9-264
               

               Cow position:
               chr14:20069333-20069589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               115, 37
               

               Conread position:
               9-265
               

               Cow position:
               chr14:47483883-47483624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               37, 62
               

               Conread position:
               12-145
               

               Cow position:
               chr14:7582263-7582395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               40-251
               

               Cow position:
               chr14:8051292-8051079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               100, 32
               

               Conread position:
               77-262
               

               Cow position:
               chr14:20930602-20930409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               50, 128
               

               Conread position:
               77-265
               

               Cow position:
               chr14:22982595-22982793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               53, 20
               

               Conread position:
               145-276
               

               Cow position:
               chr14:24436294-24436162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               146-263
               

               Cow position:
               chr14:6593475-6593593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               149-272
               

               Cow position:
               chr14:50367415-50367535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               1-131
               

               Cow position:
               chr15:5527432-5527304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               9, 68
               

               Conread position:
               1-140
               

               Cow position:
               chr15:22854650-22854516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               41, 69
               

               Conread position:
               1-145
               

               Cow position:
               chr15:27282049-27281906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               12, 71
               

               Conread position:
               1-253
               

               Cow position:
               chr15:30934305-30934569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               121, 69
               

               Conread position:
               1-254
               

               Cow position:
               chr15:29272435-29272169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               39, 70
               

               Conread position:
               1-256
               

               Cow position:
               chr15:3572454-3572728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               1-256
               

               Cow position:
               chr15:9177965-9178231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               135, 17
               

               Conread position:
               1-256
               

               Cow position:
               chr15:11957787-11957511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               42, 99
               

               Conread position:
               1-256
               

               Cow position:
               chr15:23139909-23140153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               177, 13
               

               Conread position:
               1-263
               

               Cow position:
               chr15:31182671-31182396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               38, 73
               

               Conread position:
               4-131
               

               Cow position:
               chr15:16741798-16741917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               4-256
               

               Cow position:
               chr15:36658894-36659141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               41, 7
               

               Conread position:
               8-121
               

               Cow position:
               chr15:15215259-15215150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-123
               

               Cow position:
               chr15:6282693-6282803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               8-146
               

               Cow position:
               chr15:33770856-33770724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-236
               

               Cow position:
               chr15:4373710-4373477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               34, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr15:23109067-23109312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr15:26421360-26421627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr15:37964778-37964505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               35, 93
               

               Conread position:
               8-258
               

               Cow position:
               chr15:50993981-50993716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-263
               

               Cow position:
               chr15:1830800-1830530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-263
               

               Cow position:
               chr15:23957942-23957678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               206
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-264
               

               Cow position:
               chr15:12673879-12673609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               8-269
               

               Cow position:
               chr15:4857028-4856757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 59
               

               Conread position:
               8-271
               

               Cow position:
               chr15:44209806-44209530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               216
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               8-272
               

               Cow position:
               chr15:5722428-5722706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-276
               

               Cow position:
               chr15:53118561-53118278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               10-256
               

               Cow position:
               chr15:8937246-8937009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               10-263
               

               Cow position:
               chr15:39363779-39364035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               34, 59
               

               Conread position:
               10-265
               

               Cow position:
               chr15:11574191-11573932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               36, 64
               

               Conread position:
               10-272
               

               Cow position:
               chr15:15922230-15921961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               36, 87
               

               Conread position:
               13-120
               

               Cow position:
               chr15:16825066-16824963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               28, 58
               

               Conread position:
               18-256
               

               Cow position:
               chr15:52982043-52981809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               93, 52
               

               Conread position:
               27-272
               

               Cow position:
               chr15:13545327-13545085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 44
               

               Conread position:
               34-265
               

               Cow position:
               chr15:26734840-26734601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               51-255
               

               Cow position:
               chr15:10568926-10569136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               90, 21
               

               Conread position:
               80-258
               

               Cow position:
               chr15:22833461-22833276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               45, 13
               

               Conread position:
               144-263
               

               Cow position:
               chr15:32306095-32305978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               144-263
               

               Cow position:
               chr15:52154741-52154860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-263
               

               Cow position:
               chr15:18822953-18823071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               146-254
               

               Cow position:
               chr15:23547907-23548016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               88
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               146-256
               

               Cow position:
               chr15:47821461-47821350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               146-265
               

               Cow position:
               chr15:46005566-46005686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               1-148
               

               Cow position:
               chr16:3918373-3918517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 73
               

               Conread position:
               1-205
               

               Cow position:
               chr16:56905698-56905493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               45, 74
               

               Conread position:
               1-256
               

               Cow position:
               chr16:15320623-15320365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 71
               

               Conread position:
               1-256
               

               Cow position:
               chr16:28267171-28266912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               9, 72
               

               Conread position:
               1-262
               

               Cow position:
               chr16:21095642-21095382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               204
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               1-263
               

               Cow position:
               chr16:9845868-9845617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 75
               

               Conread position:
               1-265
               

               Cow position:
               chr16:28112080-28111814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 71
               

               Conread position:
               2-140
               

               Cow position:
               chr16:27005046-27005180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               3-222
               

               Cow position:
               chr16:8704124-8704349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 69
               

               Conread position:
               4-257
               

               Cow position:
               chr16:4499281-4499548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               40, 69
               

               Conread position:
               6-266
               

               Cow position:
               chr16:40732066-40732331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 67
               

               Conread position:
               7-257
               

               Cow position:
               chr16:228636-228376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 51
               

               Conread position:
               8-121
               

               Cow position:
               chr16:25803549-25803443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 62
               

               Conread position:
               8-141
               

               Cow position:
               chr16:25463623-25463753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 65
               

               Conread position:
               8-144
               

               Cow position:
               chr16:4875844-4875975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-159
               

               Cow position:
               chr16:32384970-32384823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               138, 60
               

               Conread position:
               8-236
               

               Cow position:
               chr16:12738183-12738414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               38, 114
               

               Conread position:
               8-253
               

               Cow position:
               chr16:23990633-23990396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               8-256
               

               Cow position:
               chr16:19976821-19977082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               76, 90
               

               Conread position:
               8-256
               

               Cow position:
               chr16:20260342-20260592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               35, 64
               

               Conread position:
               8-256
               

               Cow position:
               chr16:44898879-44898637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               8-256
               

               Cow position:
               chr16:52565309-52565537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               8-259
               

               Cow position:
               chr16:12169841-12169583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-263
               

               Cow position:
               chr16:49579933-49580197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               58, 39
               

               Conread position:
               8-265
               

               Cow position:
               chr16:50014378-50014648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               8-270
               

               Cow position:
               chr16:52222478-52222197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-273
               

               Cow position:
               chr16:6998194-6998453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               33, 65
               

               Conread position:
               8-276
               

               Cow position:
               chr16:20685590-20685322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               9-263
               

               Cow position:
               chr16:18949452-18949719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 64
               

               Conread position:
               10-139
               

               Cow position:
               chr16:51994857-51994979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               14-122
               

               Cow position:
               chr16:18051950-18052056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               90
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               14-265
               

               Cow position:
               chr16:12612827-12612592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               110, 32
               

               Conread position:
               14-273
               

               Cow position:
               chr16:51880130-51879868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 59
               

               Conread position:
               18-264
               

               Cow position:
               chr16:52218941-52219197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               23-272
               

               Cow position:
               chr16:52683263-52683519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               24, 51
               

               Conread position:
               30-266
               

               Cow position:
               chr16:9765514-9765269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               16, 54
               

               Conread position:
               43-257
               

               Cow position:
               chr16:2619081-2618868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               35, 55
               

               Conread position:
               47-266
               

               Cow position:
               chr16:6375523-6375741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               77, 25
               

               Conread position:
               75-271
               

               Cow position:
               chr16:18237720-18237927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               49, 22
               

               Conread position:
               133-264
               

               Cow position:
               chr16:11218915-11219044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               144-256
               

               Cow position:
               chr16:16546078-16546191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               91
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               145-264
               

               Cow position:
               chr16:54321173-54321293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               145-265
               

               Cow position:
               chr16:46204886-46205007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               145-286
               

               Cow position:
               chr16:28814264-28814124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               145-552
               

               Cow position:
               chr16:2308691-2309100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 19
               

               Conread position:
               164-271
               

               Cow position:
               chr16:21816354-21816461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               88
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               20, 81
               

               Conread position:
               1-196
               

               Cow position:
               chr17:38276571-38276776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               46, 70
               

               Conread position:
               1-240
               

               Cow position:
               chr17:19756014-19755772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               46, 11
               

               Conread position:
               1-249
               

               Cow position:
               chr17:11837306-11837554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               45, 73
               

               Conread position:
               2-123
               

               Cow position:
               chr17:21419319-21419438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               41, 71
               

               Conread position:
               2-143
               

               Cow position:
               chr17:18494633-18494495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               14, 74
               

               Conread position:
               4-262
               

               Cow position:
               chr17:17452716-17452460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               6-122
               

               Cow position:
               chr17:25755677-25755793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               39, 91
               

               Conread position:
               8-131
               

               Cow position:
               chr17:37342591-37342474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               8-141
               

               Cow position:
               chr17:25707850-25707975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               8-151
               

               Cow position:
               chr17:28359736-28359865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               38, 62
               

               Conread position:
               8-176
               

               Cow position:
               chr17:7861950-7861787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-217
               

               Cow position:
               chr17:18824681-18824906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               33, 74
               

               Conread position:
               8-251
               

               Cow position:
               chr17:12768889-12768654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               8-254
               

               Cow position:
               chr17:37415005-37414744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr17:7595052-7595308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               8-256
               

               Cow position:
               chr17:10423974-10424215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               8-263
               

               Cow position:
               chr17:10308138-10307868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               35, 66
               

               Conread position:
               8-263
               

               Cow position:
               chr17:25740843-25741111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-263
               

               Cow position:
               chr17:35990988-35991247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               204
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               39, 65
               

               Conread position:
               8-264
               

               Cow position:
               chr17:1094625-1094360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-273
               

               Cow position:
               chr17:10790207-10790472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               34, 65
               

               Conread position:
               8-276
               

               Cow position:
               chr17:20344512-20344768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               8-279
               

               Cow position:
               chr17:20815267-20815522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               38, 48
               

               Conread position:
               8-311
               

               Cow position:
               chr17:25340263-25339945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               38, 80
               

               Conread position:
               9-256
               

               Cow position:
               chr17:30236114-30236351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               122, 8
               

               Conread position:
               10-254
               

               Cow position:
               chr17:18245970-18246213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               35, 61
               

               Conread position:
               10-256
               

               Cow position:
               chr17:18173912-18173673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 81
               

               Conread position:
               10-266
               

               Cow position:
               chr17:26084927-26085190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 56
               

               Conread position:
               13-272
               

               Cow position:
               chr17:21260054-21259780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               35, 210
               

               Conread position:
               14-252
               

               Cow position:
               chr17:40854766-40855005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               24, 61
               

               Conread position:
               14-264
               

               Cow position:
               chr17:13672173-13671918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               27, 51
               

               Conread position:
               18-256
               

               Cow position:
               chr17:15634976-15634727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               27, 82
               

               Conread position:
               30-256
               

               Cow position:
               chr17:9060220-9059991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 106
               

               Conread position:
               40-256
               

               Cow position:
               chr17:33930106-33930317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               115, 40
               

               Conread position:
               46-276
               

               Cow position:
               chr17:24339113-24339345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               48-277
               

               Cow position:
               chr17:9778597-9778822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               67, 24
               

               Conread position:
               70-269
               

               Cow position:
               chr17:8890255-8890461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               51, 27
               

               Conread position:
               91-272
               

               Cow position:
               chr17:7653592-7653776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 142
               

               Conread position:
               104-264
               

               Cow position:
               chr17:19881111-19881275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               24, 73
               

               Conread position:
               138-256
               

               Cow position:
               chr17:32457530-32457411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               139-278
               

               Cow position:
               chr17:3185224-3185359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               144-271
               

               Cow position:
               chr17:14922156-14922284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               145-261
               

               Cow position:
               chr17:10330254-10330138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               72, 33
               

               Conread position:
               145-273
               

               Cow position:
               chr17:33970434-33970569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               145-276
               

               Cow position:
               chr17:8842057-8841926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               38, 121
               

               Conread position:
               147-267
               

               Cow position:
               chr17:10792049-10791928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               93, 51
               

               Conread position:
               150-261
               

               Cow position:
               chr17:39291814-39291704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-230
               

               Cow position:
               chr18:31562583-31562349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               130, 38
               

               Conread position:
               1-253
               

               Cow position:
               chr18:21574801-21575068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 83
               

               Conread position:
               1-273
               

               Cow position:
               chr18:17324523-17324800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               9, 75
               

               Conread position:
               4-263
               

               Cow position:
               chr18:17334602-17334329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 93
               

               Conread position:
               8-242
               

               Cow position:
               chr18:4578647-4578416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               114, 38
               

               Conread position:
               8-256
               

               Cow position:
               chr18:51412191-51412429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               8-263
               

               Cow position:
               chr18:5570974-5571206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               8-263
               

               Cow position:
               chr18:41072823-41073076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-265
               

               Cow position:
               chr18:36649790-36650037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               8-270
               

               Cow position:
               chr18:35767010-35767269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               10-251
               

               Cow position:
               chr18:3780261-3780512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               11-123
               

               Cow position:
               chr18:43463589-43463480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               30, 60
               

               Conread position:
               12-141
               

               Cow position:
               chr18:23487847-23487972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               16-274
               

               Cow position:
               chr18:21930514-21930252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               18-276
               

               Cow position:
               chr18:23360460-23360736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               28, 56
               

               Conread position:
               28-273
               

               Cow position:
               chr18:37745642-37745901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               17, 49
               

               Conread position:
               29-256
               

               Cow position:
               chr18:24364208-24363975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               17, 44
               

               Conread position:
               39-265
               

               Cow position:
               chr18:13497491-13497279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               103, 31
               

               Conread position:
               47-259
               

               Cow position:
               chr18:43970222-43970436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               16, 49
               

               Conread position:
               56-236
               

               Cow position:
               chr18:49227893-49228070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               69, 16
               

               Conread position:
               80-265
               

               Cow position:
               chr18:43637622-43637801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               138-262
               

               Cow position:
               chr18:19850759-19850635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               138-266
               

               Cow position:
               chr18:7456097-7456222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               144-262
               

               Cow position:
               chr18:32517381-32517262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               145-273
               

               Cow position:
               chr18:47186937-47187064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               62, 74
               

               Conread position:
               145-281
               

               Cow position:
               chr18:6741222-6741356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               146-259
               

               Cow position:
               chr18:1190749-1190634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               147-256
               

               Cow position:
               chr18:30566584-30566475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               89
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               37, 17
               

               Conread position:
               151-261
               

               Cow position:
               chr18:5623323-5623432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               88
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               152-272
               

               Cow position:
               chr18:39455026-39454907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               2-238
               

               Cow position:
               chr19:22668066-22668310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               45, 71
               

               Conread position:
               8-135
               

               Cow position:
               chr19:44489934-44490056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-141
               

               Cow position:
               chr19:5279704-5279840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               8-155
               

               Cow position:
               chr19:1713304-1713165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-160
               

               Cow position:
               chr19:19924761-19924609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               31, 63
               

               Conread position:
               8-205
               

               Cow position:
               chr19:25637657-25637461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-254
               

               Cow position:
               chr19:31381154-31380902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-256
               

               Cow position:
               chr19:2342320-2342585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr19:2771174-2770910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               38, 61
               

               Conread position:
               8-256
               

               Cow position:
               chr19:21285241-21284974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               16, 70
               

               Conread position:
               8-256
               

               Cow position:
               chr19:31826940-31827196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               116, 62
               

               Conread position:
               8-256
               

               Cow position:
               chr19:35064352-35064084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr19:53738174-53738440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-259
               

               Cow position:
               chr19:15796505-15796765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-263
               

               Cow position:
               chr19:19673252-19673517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               206
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-263
               

               Cow position:
               chr19:43517075-43517328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               34, 63
               

               Conread position:
               8-266
               

               Cow position:
               chr19:35782290-35782025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 38
               

               Conread position:
               8-274
               

               Cow position:
               chr19:33260867-33261144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               213
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               38, 91
               

               Conread position:
               8-278
               

               Cow position:
               chr19:22863819-22863538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               8-279
               

               Cow position:
               chr19:682218-681939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 95
               

               Conread position:
               8-292
               

               Cow position:
               chr19:9100000-9100289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               37, 105
               

               Conread position:
               10-146
               

               Cow position:
               chr19:36977073-36976943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               36, 61
               

               Conread position:
               10-229
               

               Cow position:
               chr19:51536408-51536639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               36, 63
               

               Conread position:
               12-266
               

               Cow position:
               chr19:25711483-25711210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               29, 69
               

               Conread position:
               14-271
               

               Cow position:
               chr19:9703991-9703719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               82, 58
               

               Conread position:
               16-270
               

               Cow position:
               chr19:39876672-39876410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               18-276
               

               Cow position:
               chr19:19660621-19660359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               23, 84
               

               Conread position:
               19-265
               

               Cow position:
               chr19:1402960-1402695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               37-273
               

               Cow position:
               chr19:2029129-2028898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               110, 31
               

               Conread position:
               56-264
               

               Cow position:
               chr19:12473922-12473713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               96, 16
               

               Conread position:
               61-269
               

               Cow position:
               chr19:42215978-42216189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               78, 11
               

               Conread position:
               144-263
               

               Cow position:
               chr19:9571041-9570924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               39, 94
               

               Conread position:
               144-270
               

               Cow position:
               chr19:14254738-14254610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               98
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               145-266
               

               Cow position:
               chr19:2385865-2385986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-276
               

               Cow position:
               chr19:7123856-7123988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               152-264
               

               Cow position:
               chr19:5280072-5280183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               90
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               1-122
               

               Cow position:
               chr2:66797048-66796926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               40, 73
               

               Conread position:
               1-151
               

               Cow position:
               chr2:39855631-39855774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               40, 70
               

               Conread position:
               1-188
               

               Cow position:
               chr2:39533940-39534126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 69
               

               Conread position:
               1-256
               

               Cow position:
               chr2:7498428-7498693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               45, 12
               

               Conread position:
               1-256
               

               Cow position:
               chr2:49480748-49480476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               41, 17
               

               Conread position:
               1-265
               

               Cow position:
               chr2:40836317-40836052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               9, 79
               

               Conread position:
               1-265
               

               Cow position:
               chr2:54306519-54306785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               1-274
               

               Cow position:
               chr2:52777128-52777410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               2-256
               

               Cow position:
               chr2:70306007-70306261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               126, 43
               

               Conread position:
               4-267
               

               Cow position:
               chr2:40492218-40492486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               37, 69
               

               Conread position:
               5-256
               

               Cow position:
               chr2:21183013-21183263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               41, 6
               

               Conread position:
               5-264
               

               Cow position:
               chr2:34493656-34493899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               119, 41
               

               Conread position:
               8-122
               

               Cow position:
               chr2:19154155-19154268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 90
               

               Conread position:
               8-140
               

               Cow position:
               chr2:43773726-43773598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-190
               

               Cow position:
               chr2:73069573-73069750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               39, 89
               

               Conread position:
               8-227
               

               Cow position:
               chr2:15769638-15769417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               122, 40
               

               Conread position:
               8-250
               

               Cow position:
               chr2:18889534-18889313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               38, 62
               

               Conread position:
               8-251
               

               Cow position:
               chr2:36998011-36998249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               168, 38
               

               Conread position:
               8-254
               

               Cow position:
               chr2:58685229-58685498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 88
               

               Conread position:
               8-256
               

               Cow position:
               chr2:27613171-27612913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-256
               

               Cow position:
               chr2:50400275-50400533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               8-259
               

               Cow position:
               chr2:70752647-70752916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               8-262
               

               Cow position:
               chr2:69046888-69047143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               37, 65
               

               Conread position:
               8-264
               

               Cow position:
               chr2:17346918-17347176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               32, 65
               

               Conread position:
               8-264
               

               Cow position:
               chr2:56042499-56042238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               115, 36
               

               Conread position:
               8-264
               

               Cow position:
               chr2:70790899-70790627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               8-265
               

               Cow position:
               chr2:57293423-57293153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               8-276
               

               Cow position:
               chr2:39499683-39499944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               8-276
               

               Cow position:
               chr2:50606397-50606676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               38, 43
               

               Conread position:
               8-276
               

               Cow position:
               chr2:76822399-76822119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               8-278
               

               Cow position:
               chr2:29288885-29289164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               41, 66
               

               Conread position:
               9-122
               

               Cow position:
               chr2:2382707-2382598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               10-135
               

               Cow position:
               chr2:72688143-72688023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               10-230
               

               Cow position:
               chr2:61950376-61950605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               36, 64
               

               Conread position:
               10-271
               

               Cow position:
               chr2:66780003-66779733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               11-265
               

               Cow position:
               chr2:4885357-4885107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 14
               

               Conread position:
               12-264
               

               Cow position:
               chr2:40791034-40791295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               7, 51
               

               Conread position:
               14-140
               

               Cow position:
               chr2:80595456-80595335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 54
               

               Conread position:
               14-144
               

               Cow position:
               chr2:17341430-17341560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               32, 84
               

               Conread position:
               14-256
               

               Cow position:
               chr2:67485100-67485364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               32, 83
               

               Conread position:
               14-265
               

               Cow position:
               chr2:40979846-40979608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               32, 58
               

               Conread position:
               15-242
               

               Cow position:
               chr2:70601861-70602104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               30, 64
               

               Conread position:
               18-255
               

               Cow position:
               chr2:61471711-61471945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               22-276
               

               Cow position:
               chr2:70224232-70223965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               83, 24
               

               Conread position:
               25-256
               

               Cow position:
               chr2:64197120-64196876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               20, 48
               

               Conread position:
               48-273
               

               Cow position:
               chr2:62501411-62501199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               78, 24
               

               Conread position:
               51-240
               

               Cow position:
               chr2:11234741-11234566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               77-273
               

               Cow position:
               chr2:27067016-27067207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               187, 20
               

               Conread position:
               80-272
               

               Cow position:
               chr2:68010595-68010792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               48, 15
               

               Conread position:
               88-267
               

               Cow position:
               chr2:12895961-12895775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               59, 6
               

               Conread position:
               123-256
               

               Cow position:
               chr2:45435086-45435215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               55, 7
               

               Conread position:
               145-259
               

               Cow position:
               chr2:32498621-32498510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               145-261
               

               Cow position:
               chr2:39479232-39479119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               27, 37
               

               Conread position:
               146-256
               

               Cow position:
               chr2:77982140-77982029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               89
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               148-256
               

               Cow position:
               chr2:39832398-39832506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               89
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               35, 99
               

               Conread position:
               148-263
               

               Cow position:
               chr2:55848778-55848893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               162-266
               

               Cow position:
               chr2:66924895-66925000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               86
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1-146
               

               Cow position:
               chr20:26881025-26880885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               40, 70
               

               Conread position:
               1-184
               

               Cow position:
               chr20:13048530-13048346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 70
               
2-122UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr20:15577001-15576885 (view  custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               98
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               42, 69
               
2-140UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr20:23234922-23235055 (view  custom track)

               
               
               
Alignm length: 140

               
               
               
Alignm identity: 109

               
               
               
Alignm E-value: 8e-23

               
               
               
Alignm gaps (pig, cow): 40, 69
2-253UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr20:7182786-7182529 (view  custom track)

               
               
               
Alignm length: 271

               
               
               
Alignm identity: 197

               
               
               
Alignm E-value: 1e-27

               
               
               
Alignm gaps (pig, cow): 43, 71

               
               
               Conread position:4-254
               
               
               Cow position:chr20:11355107-11355346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:8-179
               
               
               Cow position:chr20:39056149-39055981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-241
               
               
               Cow position:chr20:18491078-18491304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:8-254
               
               
               Cow position:chr20:32667887-32668129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:8-256
               
               
               Cow position:chr20:14471653-14471411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:8-257
               
               
               Cow position:chr20:220513-220770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:8-263
               
               
               Cow position:chr20:29308608-29308344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:8-264
               
               
               Cow position:chr20:19339980-19339712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:45-265
               
               
               Cow position:chr20:14996576-14996364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:46-256
               
               
               Cow position:chr20:17397325-17397104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:81-273
               
               
               Cow position:chr20:306981-306795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:138-264
               
               
               Cow position:chr20:15545388-15545262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-272
               
               
               Cow position:chr20:20095092-20094961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:145-276
               
               
               Cow position:chr20:14488814-14488943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:145-285
               
               
               Cow position:chr20:39055968-39055822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:152-256
               
               
               Cow position:chr20:35683350-35683245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:155-273
               
               
               Cow position:chr20:33785179-33785298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr21:18782170-18782416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:1-274
               
               
               Cow position:chr21:11521142-11520870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:1-277
               
               
               Cow position:chr21:42053360-42053079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:2-254
               
               
               Cow position:chr21:31200081-31200338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:2-266
               
               
               Cow position:chr21:28993714-28993440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:4-253
               
               
               Cow position:chr21:4276678-4276425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:4-273
               
               
               Cow position:chr21:24714562-24714831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:8-118
               
               
               Cow position:chr21:28944450-28944346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:8-122
               
               
               Cow position:chr21:41595628-41595738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-138
               
               
               Cow position:chr21:35997087-35997213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-181
               
               
               Cow position:chr21:12973339-12973167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:8-236
               
               
               Cow position:chr21:45923730-45923494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 62

               
               
               Conread position:8-256
               
               
               Cow position:chr21:31004767-31004494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:8-256
               
               
               Cow position:chr21:31576424-31576673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:8-263
               
               
               Cow position:chr21:8187596-8187346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:8-263
               
               
               Cow position:chr21:23478805-23478543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:8-266
               
               
               Cow position:chr21:24758987-24759236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:8-269
               
               
               Cow position:chr21:36819299-36819033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-269
               
               
               Cow position:chr21:41514718-41514988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 62

               
               
               Conread position:8-273
               
               
               Cow position:chr21:16270646-16270900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:18-266
               
               
               Cow position:chr21:2057117-2056852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:22-257
               
               
               Cow position:chr21:33947324-33947071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:98-276
               
               
               Cow position:chr21:15749707-15749873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:145-264
               
               
               Cow position:chr21:29042975-29042856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-272
               
               
               Cow position:chr21:40312533-40312410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr22:26081054-26080789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:1-269
               
               
               Cow position:chr22:22997319-22997604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:4-254
               
               
               Cow position:chr22:19738731-19738476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:6-256
               
               
               Cow position:chr22:13057853-13057592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:8-122
               
               
               Cow position:chr22:39452439-39452554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:8-251
               
               
               Cow position:chr22:13235385-13235630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-252
               
               
               Cow position:chr22:45291184-45291431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:8-257
               
               
               Cow position:chr22:4651028-4651293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-258
               
               
               Cow position:chr22:4161766-4161504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:8-263
               
               
               Cow position:chr22:25311695-25311440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-264
               
               
               Cow position:chr22:7979554-7979815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:8-265
               
               
               Cow position:chr22:32221490-32221761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:8-272
               
               
               Cow position:chr22:15666057-15666325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:8-279
               
               
               Cow position:chr22:2476364-2476075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-279
               
               
               Cow position:chr22:4028653-4028935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:8-281
               
               
               Cow position:chr22:27514514-27514772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:8-282
               
               
               Cow position:chr22:10683814-10683538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:10-145
               
               
               Cow position:chr22:35520408-35520275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:10-225
               
               
               Cow position:chr22:33918050-33917833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:10-264
               
               
               Cow position:chr22:42933635-42933370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:10-291
               
               
               Cow position:chr22:27791321-27791594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:21-265
               
               
               Cow position:chr22:23730197-23730430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:97-276
               
               
               Cow position:chr22:15623475-15623645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:144-273
               
               
               Cow position:chr22:27669462-27669337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:144-277
               
               
               Cow position:chr22:39924412-39924545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:145-262
               
               
               Cow position:chr22:28487681-28487798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-274
               
               
               Cow position:chr22:41851757-41851628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:147-286
               
               
               Cow position:chr22:10132007-10132147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:151-270
               
               
               Cow position:chr22:39601411-39601529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:151-271
               
               
               Cow position:chr22:47575346-47575466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:152-263
               
               
               Cow position:chr22:5305482-5305371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:159-272
               
               
               Cow position:chr22:35520011-35519899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:162-263
               
               
               Cow position:chr22:30270728-30270829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-146
               
               
               Cow position:chr23:19636417-19636278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:5-263
               
               
               Cow position:chr23:1203869-1203600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:8-232
               
               
               Cow position:chr23:23470793-23471005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-253
               
               
               Cow position:chr23:16072468-16072227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:8-256
               
               
               Cow position:chr23:28700856-28701107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:8-263
               
               
               Cow position:chr23:22588414-22588153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-266
               
               
               Cow position:chr23:9711732-9711467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:8-267
               
               
               Cow position:chr23:9641564-9641302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):115, 52

               
               
               Conread position:8-267
               
               
               Cow position:chr23:32063511-32063248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:8-279
               
               
               Cow position:chr23:11404405-11404130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:10-252
               
               
               Cow position:chr23:40651608-40651356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:13-276
               
               
               Cow position:chr23:32148475-32148213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:16-263
               
               
               Cow position:chr23:36146596-36146349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:18-236
               
               
               Cow position:chr23:41590048-41589822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:18-254
               
               
               Cow position:chr23:30773816-30773581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:20-262
               
               
               Cow position:chr23:38058482-38058229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:34-263
               
               
               Cow position:chr23:17474726-17474513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):150, 12

               
               
               Conread position:47-284
               
               
               Cow position:chr23:27988928-27989167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:74-283
               
               
               Cow position:chr23:28350005-28349799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:144-284
               
               
               Cow position:chr23:28040560-28040701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1-141
               
               
               Cow position:chr24:31258519-31258384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:1-256
               
               
               Cow position:chr24:39123683-39123936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:1-263
               
               
               Cow position:chr24:28724256-28724516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:2-128
               
               
               Cow position:chr24:43733789-43733912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:2-234
               
               
               Cow position:chr24:27683618-27683385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:3-270
               
               
               Cow position:chr24:15617631-15617366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 47

               
               
               Conread position:8-134
               
               
               Cow position:chr24:37205053-37204931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:8-168
               
               
               Cow position:chr24:39500453-39500293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-242
               
               
               Cow position:chr24:35529749-35529987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:8-253
               
               
               Cow position:chr24:25677863-25678114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:8-256
               
               
               Cow position:chr24:28279468-28279718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-257
               
               
               Cow position:chr24:31378586-31378844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:8-264
               
               
               Cow position:chr24:29041863-29042122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:8-273
               
               
               Cow position:chr24:42453827-42454097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:9-122
               
               
               Cow position:chr24:20862131-20862022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr24:30860463-30860729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:51-266
               
               
               Cow position:chr24:35429604-35429385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:73-263
               
               
               Cow position:chr24:34294078-34293883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:143-255
               
               
               Cow position:chr24:27154190-27154076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr25:25961807-25962068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:2-246
               
               
               Cow position:chr25:14467240-14466988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr25:10012205-10011945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:8-146
               
               
               Cow position:chr25:8512243-8512110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:8-256
               
               
               Cow position:chr25:20625079-20624820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:8-256
               
               
               Cow position:chr25:22909996-22909745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:8-260
               
               
               Cow position:chr25:33411106-33411377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:8-264
               
               
               Cow position:chr25:16007641-16007904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:12-235
               
               
               Cow position:chr25:27504328-27504106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:20-279
               
               
               Cow position:chr25:7480056-7480336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:137-266
               
               
               Cow position:chr25:22270448-22270577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:145-276
               
               
               Cow position:chr25:10510881-10510751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:151-263
               
               
               Cow position:chr25:11674687-11674576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:154-255
               
               
               Cow position:chr25:15358355-15358253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-261
               
               
               Cow position:chr26:19178478-19178740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:4-263
               
               
               Cow position:chr26:33227672-33227933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:8-141
               
               
               Cow position:chr26:33745784-33745914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:8-236
               
               
               Cow position:chr26:20129804-20129565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-245
               
               
               Cow position:chr26:7103165-7102922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-247
               
               
               Cow position:chr26:29353640-29353386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:8-251
               
               
               Cow position:chr26:2769973-2769712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:8-254
               
               
               Cow position:chr26:3756100-3756355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:8-270
               
               
               Cow position:chr26:17289072-17289345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-272
               
               
               Cow position:chr26:3921875-3921624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:8-273
               
               
               Cow position:chr26:33212498-33212240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:17-264
               
               
               Cow position:chr26:20445226-20444970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:18-262
               
               
               Cow position:chr26:23272661-23272914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:19-272
               
               
               Cow position:chr26:5171923-5171659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:25-278
               
               
               Cow position:chr26:4747973-4747704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:73-273
               
               
               Cow position:chr26:12125114-12124901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:138-256
               
               
               Cow position:chr26:3019403-3019283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:146-256
               
               
               Cow position:chr26:18719277-18719388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:146-257
               
               
               Cow position:chr26:19935337-19935226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:151-273
               
               
               Cow position:chr26:26347175-26347297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:1-141
               
               
               Cow position:chr27:14937311-14937448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:1-190
               
               
               Cow position:chr27:16580734-16580553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:1-253
               
               
               Cow position:chr27:21138936-21138672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 69

               
               
               Conread position:1-255
               
               
               Cow position:chr27:30790562-30790312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:1-263
               
               
               Cow position:chr27:30702963-30703235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:1-283
               
               
               Cow position:chr27:22518741-22518471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):260, 9

               
               
               Conread position:3-278
               
               
               Cow position:chr27:19637752-19637485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:6-264
               
               
               Cow position:chr27:20510300-20510046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:8-122
               
               
               Cow position:chr27:18948488-18948599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:8-252
               
               
               Cow position:chr27:26440954-26441205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-256
               
               
               Cow position:chr27:23662502-23662754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):140, 71

               
               
               Conread position:8-260
               
               
               Cow position:chr27:27867589-27867826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-262
               
               
               Cow position:chr27:11600897-11601130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:8-265
               
               
               Cow position:chr27:1953009-1953259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:8-271
               
               
               Cow position:chr27:10086578-10086846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:8-271
               
               
               Cow position:chr27:29019646-29019911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:8-274
               
               
               Cow position:chr27:465064-464793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:9-275
               
               
               Cow position:chr27:30561018-30560745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:10-252
               
               
               Cow position:chr27:9691948-9692174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:10-269
               
               
               Cow position:chr27:25885835-25886105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:10-272
               
               
               Cow position:chr27:28107089-28107359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:18-232
               
               
               Cow position:chr27:23600364-23600135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:64-262
               
               
               Cow position:chr27:26483278-26483072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:126-272
               
               
               Cow position:chr27:18219367-18219218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:180-295
               
               
               Cow position:chr27:18948626-18948739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1-142
               
               
               Cow position:chr28:4763724-4763859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:1-169
               
               
               Cow position:chr28:25563927-25564091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:1-271
               
               
               Cow position:chr28:23231217-23230947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:2-180
               
               
               Cow position:chr28:11501041-11500871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:8-135
               
               
               Cow position:chr28:14493394-14493519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:8-208
               
               
               Cow position:chr28:10642162-10641959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):128, 62

               
               
               Conread position:8-236
               
               
               Cow position:chr28:13693606-13693852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-254
               
               
               Cow position:chr28:31971900-31971666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:8-256
               
               
               Cow position:chr28:19133643-19133897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:8-256
               
               
               Cow position:chr28:21873628-21873882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:8-256
               
               
               Cow position:chr28:29455801-29455548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:8-286
               
               
               Cow position:chr28:34150672-34150398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:26-276
               
               
               Cow position:chr28:27659804-27659550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:35-263
               
               
               Cow position:chr28:13255994-13255745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:42-257
               
               
               Cow position:chr28:25340164-25340395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:96-278
               
               
               Cow position:chr28:25334993-25335172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:137-272
               
               
               Cow position:chr28:11355671-11355539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:145-271
               
               
               Cow position:chr28:33324084-33324209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-263
               
               
               Cow position:chr29:37719754-37720007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:2-147
               
               
               Cow position:chr29:13553977-13554118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:2-264
               
               
               Cow position:chr29:28993347-28993614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:8-122
               
               
               Cow position:chr29:11071851-11071740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:8-123
               
               
               Cow position:chr29:18072782-18072893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-236
               
               
               Cow position:chr29:32644772-32645007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:8-240
               
               
               Cow position:chr29:27285644-27285870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:8-250
               
               
               Cow position:chr29:36404670-36404915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:8-252
               
               
               Cow position:chr29:10153941-10153684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:8-255
               
               
               Cow position:chr29:26129350-26129609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:8-256
               
               
               Cow position:chr29:29302803-29302542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:8-257
               
               
               Cow position:chr29:7408036-7407788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-261
               
               
               Cow position:chr29:5964572-5964331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:8-269
               
               
               Cow position:chr29:709272-709005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-271
               
               
               Cow position:chr29:34609871-34609605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:9-122
               
               
               Cow position:chr29:7392949-7393058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:10-279
               
               
               Cow position:chr29:21925060-21925332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:131-256
               
               
               Cow position:chr29:11766707-11766832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:139-267
               
               
               Cow position:chr29:2650645-2650518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:1-122
               
               
               Cow position:chr3:22171008-22171123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:1-136
               
               
               Cow position:chr3:34316142-34316008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:1-145
               
               
               Cow position:chr3:50347786-50347924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:1-252
               
               
               Cow position:chr3:58865641-58865384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:1-254
               
               
               Cow position:chr3:51255607-51255871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:1-257
               
               
               Cow position:chr3:20092695-20092431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:1-261
               
               
               Cow position:chr3:63237927-63237664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:1-263
               
               
               Cow position:chr3:11949535-11949275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:1-264
               
               
               Cow position:chr3:82473877-82474142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:1-272
               
               
               Cow position:chr3:23496738-23496469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr3:8923866-8924134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:2-263
               
               
               Cow position:chr3:58350405-58350672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:2-271
               
               
               Cow position:chr3:16809966-16809704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:2-272
               
               
               Cow position:chr3:49428131-49427876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:3-263
               
               
               Cow position:chr3:46332315-46332061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:4-122
               
               
               Cow position:chr3:58174727-58174842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:4-131
               
               
               Cow position:chr3:43657884-43657763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:4-255
               
               
               Cow position:chr3:4329165-4329412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:4-256
               
               
               Cow position:chr3:23476825-23477084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:8-134
               
               
               Cow position:chr3:62884033-62884153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-134
               
               
               Cow position:chr3:66116285-66116162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-172
               
               
               Cow position:chr3:53588560-53588393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-189
               
               
               Cow position:chr3:36174243-36174072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-254
               
               
               Cow position:chr3:55992040-55991777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:8-256
               
               
               Cow position:chr3:22271608-22271361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:8-256
               
               
               Cow position:chr3:23111674-23111419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:8-256
               
               
               Cow position:chr3:25090889-25091123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:8-256
               
               
               Cow position:chr3:51146835-51146578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:8-256
               
               
               Cow position:chr3:63038962-63039194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):126, 29

               
               
               Conread position:8-259
               
               
               Cow position:chr3:17742339-17742586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:8-263
               
               
               Cow position:chr3:66738604-66738859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:8-263
               
               
               Cow position:chr3:73777108-73777371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:8-264
               
               
               Cow position:chr3:32597101-32596843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:8-264
               
               
               Cow position:chr3:53538355-53538613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:8-264
               
               
               Cow position:chr3:83396023-83396283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:8-273
               
               
               Cow position:chr3:71135619-71135897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-275
               
               
               Cow position:chr3:17284668-17284940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:8-279
               
               
               Cow position:chr3:33633061-33632792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:8-284
               
               
               Cow position:chr3:4223144-4223421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:9-122
               
               
               Cow position:chr3:48433777-48433886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:9-276
               
               
               Cow position:chr3:61116543-61116295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:10-256
               
               
               Cow position:chr3:5420033-5419770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:10-270
               
               
               Cow position:chr3:8790762-8790493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:12-256
               
               
               Cow position:chr3:22954021-22953790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):171, 34

               
               
               Conread position:13-265
               
               
               Cow position:chr3:70129976-70129726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:25-277
               
               
               Cow position:chr3:74561567-74561309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:26-276
               
               
               Cow position:chr3:35018999-35018753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:26-277
               
               
               Cow position:chr3:22781127-22780884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):238, 20

               
               
               Conread position:28-265
               
               
               Cow position:chr3:3063592-3063827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:35-274
               
               
               Cow position:chr3:74035667-74035431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:40-247
               
               
               Cow position:chr3:69446875-69446660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:56-273
               
               
               Cow position:chr3:20405680-20405895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:77-246
               
               
               Cow position:chr3:58852066-58852241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:77-269
               
               
               Cow position:chr3:66145808-66146008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:78-276
               
               
               Cow position:chr3:66147197-66147381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):173, 20

               
               
               Conread position:98-290
               
               
               Cow position:chr3:58226954-58226757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:136-273
               
               
               Cow position:chr3:38306593-38306731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 115

               
               
               Conread position:137-265
               
               
               Cow position:chr3:45690901-45690775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:137-271
               
               
               Cow position:chr3:29095366-29095229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:145-267
               
               
               Cow position:chr3:42293996-42293877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:146-256
               
               
               Cow position:chr3:58632545-58632655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-277
               
               
               Cow position:chr3:84976951-84976821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:148-273
               
               
               Cow position:chr3:58181045-58180919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:153-263
               
               
               Cow position:chr3:53633326-53633437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:155-276
               
               
               Cow position:chr3:50462484-50462602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:164-278
               
               
               Cow position:chr3:20054763-20054878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-140
               
               
               Cow position:chr4:25972733-25972866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr4:9547812-9548062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:1-265
               
               
               Cow position:chr4:59833774-59834045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:2-254
               
               
               Cow position:chr4:22249609-22249341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:2-256
               
               
               Cow position:chr4:54146638-54146357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:3-253
               
               
               Cow position:chr4:45952532-45952281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:3-258
               
               
               Cow position:chr4:22115444-22115717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:3-276
               
               
               Cow position:chr4:58948069-58947793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:4-264
               
               
               Cow position:chr4:7213742-7213480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:4-272
               
               
               Cow position:chr4:59888756-59888495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:4-302
               
               
               Cow position:chr4:25906486-25906184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:7-146
               
               
               Cow position:chr4:23758646-23758779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:8-122
               
               
               Cow position:chr4:26541581-26541692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:8-129
               
               
               Cow position:chr4:63418081-63417963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:8-131
               
               
               Cow position:chr4:27561239-27561358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:8-133
               
               
               Cow position:chr4:19307102-19307223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:8-136
               
               
               Cow position:chr4:22528545-22528421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:8-140
               
               
               Cow position:chr4:31172517-31172645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-151
               
               
               Cow position:chr4:45918879-45919012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-256
               
               
               Cow position:chr4:48499682-48499926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:8-257
               
               
               Cow position:chr4:49001454-49001200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-257
               
               
               Cow position:chr4:62411720-62411963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:8-260
               
               
               Cow position:chr4:60783887-60784143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-264
               
               
               Cow position:chr4:23381963-23381700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:8-266
               
               
               Cow position:chr4:5553946-5553676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-268
               
               
               Cow position:chr4:23065925-23065659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:8-275
               
               
               Cow position:chr4:20090727-20090472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:10-254
               
               
               Cow position:chr4:59719478-59719710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:10-256
               
               
               Cow position:chr4:30131190-30131445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:10-256
               
               
               Cow position:chr4:35471180-35471427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:12-151
               
               
               Cow position:chr4:41154491-41154622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:12-267
               
               
               Cow position:chr4:21259063-21259335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:14-258
               
               
               Cow position:chr4:24497968-24497717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:14-267
               
               
               Cow position:chr4:46083040-46082785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:29-231
               
               
               Cow position:chr4:12667476-12667267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:35-265
               
               
               Cow position:chr4:58576482-58576250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:39-249
               
               
               Cow position:chr4:50127739-50127950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:87-271
               
               
               Cow position:chr4:4946987-4947174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:88-272
               
               
               Cow position:chr4:33681910-33682088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:145-264
               
               
               Cow position:chr4:61304414-61304295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-266
               
               
               Cow position:chr4:19729104-19728984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-264
               
               
               Cow position:chr4:20118210-20118100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr5:20974577-20974459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:1-122
               
               
               Cow position:chr5:33467174-33467057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:1-262
               
               
               Cow position:chr5:40759846-40760105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:1-264
               
               
               Cow position:chr5:72042093-72042356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:1-269
               
               
               Cow position:chr5:31786119-31786379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:1-270
               
               
               Cow position:chr5:69773440-69773703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:1-272
               
               
               Cow position:chr5:504043-503763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:1-273
               
               
               Cow position:chr5:46294797-46294528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:2-135
               
               
               Cow position:chr5:27615384-27615513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:2-279
               
               
               Cow position:chr5:18104276-18103979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:8-122
               
               
               Cow position:chr5:37714022-37713912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:8-140
               
               
               Cow position:chr5:14154023-14154152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:8-145
               
               
               Cow position:chr5:39182035-39181903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:8-145
               
               
               Cow position:chr5:48143911-48143777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-146
               
               
               Cow position:chr5:41636746-41636876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-148
               
               
               Cow position:chr5:22839596-22839464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-148
               
               
               Cow position:chr5:22934577-22934444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:8-241
               
               
               Cow position:chr5:55989619-55989869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:8-254
               
               
               Cow position:chr5:34184099-34184365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:8-256
               
               
               Cow position:chr5:3649582-3649318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:8-256
               
               
               Cow position:chr5:4630999-4631245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 38

               
               
               Conread position:8-256
               
               
               Cow position:chr5:17869582-17869829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:8-256
               
               
               Cow position:chr5:23641117-23640873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:8-256
               
               
               Cow position:chr5:50425601-50425344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:8-256
               
               
               Cow position:chr5:64398886-64399152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:8-256
               
               
               Cow position:chr5:73526256-73526510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:8-257
               
               
               Cow position:chr5:56385105-56385358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-263
               
               
               Cow position:chr5:43110442-43110700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 36

               
               
               Conread position:8-263
               
               
               Cow position:chr5:72902438-72902697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:8-266
               
               
               Cow position:chr5:26046210-26046475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-266
               
               
               Cow position:chr5:32282210-32282487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:8-267
               
               
               Cow position:chr5:19905397-19905128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:8-276
               
               
               Cow position:chr5:13906743-13907015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:8-276
               
               
               Cow position:chr5:24361409-24361676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:8-278
               
               
               Cow position:chr5:36407034-36407318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:10-232
               
               
               Cow position:chr5:14538781-14538560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:18-257
               
               
               Cow position:chr5:13044508-13044267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:19-254
               
               
               Cow position:chr5:47681115-47680876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:23-270
               
               
               Cow position:chr5:51502903-51503163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):103, 21

               
               
               Conread position:29-273
               
               
               Cow position:chr5:44417457-44417199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:45-263
               
               
               Cow position:chr5:17404094-17403897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:69-270
               
               
               Cow position:chr5:67555147-67555349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:96-275
               
               
               Cow position:chr5:23715126-23714931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:120-256
               
               
               Cow position:chr5:21195117-21194979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:126-270
               
               
               Cow position:chr5:41907041-41907189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:138-263
               
               
               Cow position:chr5:65044049-65043923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:139-266
               
               
               Cow position:chr5:63819166-63819035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:145-264
               
               
               Cow position:chr5:36024545-36024426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-265
               
               
               Cow position:chr5:26376576-26376698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:145-266
               
               
               Cow position:chr5:20572081-20572202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-269
               
               
               Cow position:chr5:75524661-75524786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:146-256
               
               
               Cow position:chr5:30332983-30333094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:146-256
               
               
               Cow position:chr5:38629319-38629430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:147-256
               
               
               Cow position:chr5:67149984-67149874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:151-257
               
               
               Cow position:chr5:3058957-3059064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-144
               
               
               Cow position:chr6:60152919-60153060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:1-256
               
               
               Cow position:chr6:9026398-9026677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:1-264
               
               
               Cow position:chr6:64436444-64436166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:4-252
               
               
               Cow position:chr6:50271208-50270958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):126, 44

               
               
               Conread position:8-128
               
               
               Cow position:chr6:56376462-56376346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-145
               
               
               Cow position:chr6:8318274-8318144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-237
               
               
               Cow position:chr6:67436878-67437103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:8-243
               
               
               Cow position:chr6:12387434-12387194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-253
               
               
               Cow position:chr6:1907434-1907674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:8-256
               
               
               Cow position:chr6:10237255-10237491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-256
               
               
               Cow position:chr6:52556584-52556341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:8-257
               
               
               Cow position:chr6:37053890-37054143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:8-264
               
               
               Cow position:chr6:35703299-35703043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-265
               
               
               Cow position:chr6:16634328-16634060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-270
               
               
               Cow position:chr6:59249787-59249528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:8-274
               
               
               Cow position:chr6:32816888-32817155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:8-276
               
               
               Cow position:chr6:4079493-4079220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:8-278
               
               
               Cow position:chr6:62345958-62345706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:9-233
               
               
               Cow position:chr6:47327175-47326938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:10-278
               
               
               Cow position:chr6:37739078-37739353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:12-255
               
               
               Cow position:chr6:22968975-22969215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:14-266
               
               
               Cow position:chr6:20379572-20379311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:14-273
               
               
               Cow position:chr6:61322504-61322767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:15-141
               
               
               Cow position:chr6:59588513-59588389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:18-265
               
               
               Cow position:chr6:38895182-38894945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:19-279
               
               
               Cow position:chr6:8986481-8986227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:28-272
               
               
               Cow position:chr6:15025979-15025720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:43-266
               
               
               Cow position:chr6:19424629-19424864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:43-278
               
               
               Cow position:chr6:29480175-29480417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 227

               
               
               Conread position:60-276
               
               
               Cow position:chr6:21319744-21319528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:76-265
               
               
               Cow position:chr6:55643495-55643294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:138-270
               
               
               Cow position:chr6:24557919-24558051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 47

               
               
               Conread position:145-265
               
               
               Cow position:chr6:49333242-49333362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-263
               
               
               Cow position:chr6:50317998-50317880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:146-266
               
               
               Cow position:chr6:16781706-16781586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-272
               
               
               Cow position:chr6:44832666-44832555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-271
               
               
               Cow position:chr6:40104754-40104858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr7:54633544-54633344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:1-263
               
               
               Cow position:chr7:20355841-20356114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:1-266
               
               
               Cow position:chr7:61307993-61308270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:2-140
               
               
               Cow position:chr7:3134557-3134419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:2-265
               
               
               Cow position:chr7:5250028-5249745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:4-256
               
               
               Cow position:chr7:47875079-47874827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):120, 42

               
               
               Conread position:8-120
               
               
               Cow position:chr7:40213246-40213355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:8-121
               
               
               Cow position:chr7:45709312-45709203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-176
               
               
               Cow position:chr7:34199222-34199387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:8-206
               
               
               Cow position:chr7:68868001-68868208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-236
               
               
               Cow position:chr7:10942959-10942724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:8-236
               
               
               Cow position:chr7:53038361-53038133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:8-255
               
               
               Cow position:chr7:26665662-26665410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:8-256
               
               
               Cow position:chr7:10345536-10345308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:8-256
               
               
               Cow position:chr7:12755252-12754996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:8-256
               
               
               Cow position:chr7:64140233-64139985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:8-262
               
               
               Cow position:chr7:51884609-51884342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:8-263
               
               
               Cow position:chr7:62006284-62006011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:8-264
               
               
               Cow position:chr7:40727085-40727357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:8-264
               
               
               Cow position:chr7:48899950-48899690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:8-269
               
               
               Cow position:chr7:8261129-8260861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:8-269
               
               
               Cow position:chr7:64104631-64104881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:8-270
               
               
               Cow position:chr7:65618354-65618086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:8-271
               
               
               Cow position:chr7:36128894-36129164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-272
               
               
               Cow position:chr7:3322690-3322967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:8-272
               
               
               Cow position:chr7:44442759-44442487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:8-273
               
               
               Cow position:chr7:43941221-43941493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:8-273
               
               
               Cow position:chr7:49714720-49714990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:10-139
               
               
               Cow position:chr7:2744652-2744527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:10-151
               
               
               Cow position:chr7:55076806-55076672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:14-118
               
               
               Cow position:chr7:19616805-19616704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:25-264
               
               
               Cow position:chr7:57729954-57729701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:27-256
               
               
               Cow position:chr7:26466659-26466901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:29-254
               
               
               Cow position:chr7:26195882-26195648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:30-272
               
               
               Cow position:chr7:36258936-36259185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:44-272
               
               
               Cow position:chr7:50019446-50019215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:51-256
               
               
               Cow position:chr7:39603271-39603481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:56-267
               
               
               Cow position:chr7:49395328-49395116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:62-264
               
               
               Cow position:chr7:40710495-40710703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:69-263
               
               
               Cow position:chr7:48132666-48132867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:73-276
               
               
               Cow position:chr7:60490274-60490477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:98-262
               
               
               Cow position:chr7:58354698-58354537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:145-275
               
               
               Cow position:chr7:42344235-42344365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr8:31313752-31313865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:1-147
               
               
               Cow position:chr8:39936358-39936504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:1-149
               
               
               Cow position:chr8:29935772-29935915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:1-237
               
               
               Cow position:chr8:47995447-47995213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:1-264
               
               
               Cow position:chr8:24909465-24909723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:1-272
               
               
               Cow position:chr8:42578222-42577949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:1-273
               
               
               Cow position:chr8:24834577-24834848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:2-153
               
               
               Cow position:chr8:52195774-52195925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:4-254
               
               
               Cow position:chr8:21281922-21282183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:8-121
               
               
               Cow position:chr8:35436754-35436645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:8-128
               
               
               Cow position:chr8:13738359-13738476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:8-144
               
               
               Cow position:chr8:4161166-4161035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:8-149
               
               
               Cow position:chr8:29028220-29028086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-230
               
               
               Cow position:chr8:43904646-43904872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:8-231
               
               
               Cow position:chr8:29416470-29416268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:8-252
               
               
               Cow position:chr8:25572913-25573163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:8-254
               
               
               Cow position:chr8:13975758-13976016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:8-256
               
               
               Cow position:chr8:24934013-24934245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-256
               
               
               Cow position:chr8:28221703-28221438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-256
               
               
               Cow position:chr8:36505229-36505503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:8-256
               
               
               Cow position:chr8:47295841-47296098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:8-256
               
               
               Cow position:chr8:53865969-53866229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-257
               
               
               Cow position:chr8:11896082-11896333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 38

               
               
               Conread position:8-264
               
               
               Cow position:chr8:31317405-31317648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:8-264
               
               
               Cow position:chr8:32491416-32491665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-265
               
               
               Cow position:chr8:20131689-20131955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:8-265
               
               
               Cow position:chr8:49300734-49300466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:8-265
               
               
               Cow position:chr8:61123439-61123185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:8-270
               
               
               Cow position:chr8:8902103-8901843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:8-272
               
               
               Cow position:chr8:36364189-36363919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:8-273
               
               
               Cow position:chr8:3147683-3147395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 6

               
               
               Conread position:10-243
               
               
               Cow position:chr8:18220862-18220624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:10-276
               
               
               Cow position:chr8:58385530-58385805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:12-146
               
               
               Cow position:chr8:44664713-44664583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:14-256
               
               
               Cow position:chr8:35218234-35218494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:14-264
               
               
               Cow position:chr8:11637996-11638251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:18-141
               
               
               Cow position:chr8:30135788-30135907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:41-273
               
               
               Cow position:chr8:55211070-55211305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:44-273
               
               
               Cow position:chr8:53991992-53992218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:48-256
               
               
               Cow position:chr8:11249575-11249352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:96-276
               
               
               Cow position:chr8:57236710-57236902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:144-262
               
               
               Cow position:chr8:6830789-6830672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:145-263
               
               
               Cow position:chr8:6021504-6021385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:145-263
               
               
               Cow position:chr8:29390944-29391062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-256
               
               
               Cow position:chr8:46640319-46640209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:1-296
               
               
               Cow position:chr9:8740701-8740408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:2-245
               
               
               Cow position:chr9:58204844-58204595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 64

               
               
               Conread position:2-264
               
               
               Cow position:chr9:5071421-5071697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:2-276
               
               
               Cow position:chr9:46242079-46242365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:4-271
               
               
               Cow position:chr9:21462667-21462971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:8-131
               
               
               Cow position:chr9:44108652-44108769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:8-140
               
               
               Cow position:chr9:52787358-52787486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:8-148
               
               
               Cow position:chr9:56253076-56252941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-151
               
               
               Cow position:chr9:32816955-32817094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:8-216
               
               
               Cow position:chr9:33880546-33880338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:8-236
               
               
               Cow position:chr9:214289-214529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-236
               
               
               Cow position:chr9:44552926-44552678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 90

               
               
               Conread position:8-238
               
               
               Cow position:chr9:52633316-52633561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:8-247
               
               
               Cow position:chr9:58669556-58669302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:8-256
               
               
               Cow position:chr9:11102636-11102888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:8-256
               
               
               Cow position:chr9:18093484-18093731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:8-256
               
               
               Cow position:chr9:34310209-34309940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:8-256
               
               
               Cow position:chr9:42173013-42173274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:8-256
               
               
               Cow position:chr9:48773522-48773261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:8-260
               
               
               Cow position:chr9:35368819-35368552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:8-263
               
               
               Cow position:chr9:8914441-8914187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-263
               
               
               Cow position:chr9:44217939-44217679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:8-272
               
               
               Cow position:chr9:23443738-23443485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:8-272
               
               
               Cow position:chr9:23450689-23450436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:8-272
               
               
               Cow position:chr9:31886236-31886485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:8-273
               
               
               Cow position:chr9:3594351-3594622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:8-276
               
               
               Cow position:chr9:46227051-46226779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:10-122
               
               
               Cow position:chr9:18110688-18110797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:12-276
               
               
               Cow position:chr9:11146484-11146746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:16-274
               
               
               Cow position:chr9:54446263-54446517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:20-272
               
               
               Cow position:chr9:16982810-16983037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:29-256
               
               
               Cow position:chr9:30020125-30019893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:35-272
               
               
               Cow position:chr9:7843799-7843551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 226

               
               
               Conread position:40-256
               
               
               Cow position:chr9:24837675-24837449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:52-256
               
               
               Cow position:chr9:15034043-15033820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:56-253
               
               
               Cow position:chr9:33059151-33059357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:144-273
               
               
               Cow position:chr9:11155582-11155453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-278
               
               
               Cow position:chr9:64104964-64104830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:146-273
               
               
               Cow position:chr9:21956746-21956619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:1-169
               
               
               Cow position:chrX:32743404-32743566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:1-272
               
               
               Cow position:chrX:33590597-33590875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:2-140
               
               
               Cow position:chrX:21664852-21664718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:6-141
               
               
               Cow position:chrX:25419283-25419153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:7-140
               
               
               Cow position:chrX:6656262-6656388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-122
               
               
               Cow position:chrX:10302215-10302323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:8-138
               
               
               Cow position:chrX:1978392-1978513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:8-141
               
               
               Cow position:chrX:25338060-25338189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-141
               
               
               Cow position:chrX:33827141-33827010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:8-188
               
               
               Cow position:chrX:38840767-38840955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:8-237
               
               
               Cow position:chrX:9161462-9161701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-254
               
               
               Cow position:chrX:7425346-7425608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:8-254
               
               
               Cow position:chrX:11746721-11746972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:8-254
               
               
               Cow position:chrX:41560367-41560128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:8-256
               
               
               Cow position:chrX:18216157-18216413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:8-256
               
               
               Cow position:chrX:31273121-31273347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-257
               
               
               Cow position:chrX:5047027-5046771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:8-257
               
               
               Cow position:chrX:17042569-17042828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:8-262
               
               
               Cow position:chrX:2029270-2029535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:8-263
               
               
               Cow position:chrX:630429-630159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:8-267
               
               
               Cow position:chrX:16284068-16283787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:8-267
               
               
               Cow position:chrX:25966915-25967158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):120, 62

               
               
               Conread position:8-269
               
               
               Cow position:chrX:33803132-33802850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:8-273
               
               
               Cow position:chrX:10107096-10106812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:8-273
               
               
               Cow position:chrX:11562033-11562308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:8-273
               
               
               Cow position:chrX:25193537-25193819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:8-274
               
               
               Cow position:chrX:30005145-30005393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:8-276
               
               
               Cow position:chrX:41070814-41071098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:10-147
               
               
               Cow position:chrX:17271406-17271275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:10-256
               
               
               Cow position:chrX:36840755-36841007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:12-254
               
               
               Cow position:chrX:6563401-6563662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:18-271
               
               
               Cow position:chrX:6479883-6480137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:26-263
               
               
               Cow position:chrX:582949-583186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:35-273
               
               
               Cow position:chrX:6643189-6643428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:50-263
               
               
               Cow position:chrX:39097439-39097660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:73-256
               
               
               Cow position:chrX:34470673-34470857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:73-273
               
               
               Cow position:chrX:30088646-30088462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:95-263
               
               
               Cow position:chrX:42458569-42458741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:130-257
               
               
               Cow position:chrX:9539340-9539467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:130-257
               
               
               Cow position:chrX:9839242-9839369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:148-269
               
               
               Cow position:chrX:16419182-16419304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 0
Conread position:	1-146
Cow position:	chr1:64189349-64189485 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	116
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	45, 0
Conread position:	1-172
Cow position:	chr1:20422356-20422189 (view UCSC Genome Browser custom track)
Alignm length:	174
Alignm identity:	126
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	154, 69
Conread position:	1-264
Cow position:	chr1:67994983-67995246 (view UCSC Genome Browser custom track)
Alignm length:	275
Alignm identity:	199
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	49, 17
Conread position:	1-271
Cow position:	chr1:6881374-6881099 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	209
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	40, 71
Conread position:	1-285
Cow position:	chr1:61661458-61661174 (view UCSC Genome Browser custom track)
Alignm length:	295
Alignm identity:	215
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	41, 105
Conread position:	2-256
Cow position:	chr1:3657509-3657243 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	187
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	44, 62
Conread position:	4-264
Cow position:	chr1:56073606-56073343 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	210
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 56
Conread position:	8-120
Cow position:	chr1:70236433-70236324 (view UCSC Genome Browser custom track)
Alignm length:	115
Alignm identity:	95
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	35, 64
Conread position:	8-122
Cow position:	chr1:32244544-32244434 (view UCSC Genome Browser custom track)
Alignm length:	116
Alignm identity:	95
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	33, 60
Conread position:	8-129
Cow position:	chr1:50634545-50634428 (view UCSC Genome Browser custom track)
Alignm length:	123
Alignm identity:	98
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	33, 63
Conread position:	8-140
Cow position:	chr1:5061883-5062010 (view UCSC Genome Browser custom track)
Alignm length:	134
Alignm identity:	105
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	37, 63
Conread position:	8-197
Cow position:	chr1:29916263-29916452 (view UCSC Genome Browser custom track)
Alignm length:	196
Alignm identity:	140
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	20, 64
Conread position:	8-233
Cow position:	chr1:92642586-92642347 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	168
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	37, 64
Conread position:	8-249
Cow position:	chr1:6795073-6794809 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	190
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	33, 89
Conread position:	8-254
Cow position:	chr1:4175412-4175165 (view UCSC Genome Browser custom track)
Alignm length:	258
Alignm identity:	178
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	123, 18
Conread position:	8-256
Cow position:	chr1:13195564-13195310 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	197
Alignm E-value:	9e-37
Alignm gaps (pig, cow):	33, 63
Conread position:	8-266
Cow position:	chr1:9869992-9869728 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	206
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	38, 65
Conread position:	8-268
Cow position:	chr1:67407335-67407068 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	198
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	36, 150
Conread position:	8-271
Cow position:	chr1:78750831-78750561 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	205
Alignm E-value:	4.99997e-41
Alignm gaps (pig, cow):	38, 65
Conread position:	8-275
Cow position:	chr1:73363812-73363544 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	218
Alignm E-value:	0
Alignm gaps (pig, cow):	38, 64