Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig1-131E01
        

               Conread position:
               276-498
               

               Cow position:
               chr1:102780794-102780576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               67, 9
               

               Conread position:
               276-525
               

               Cow position:
               chr1:49972631-49972380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               276-525
               

               Cow position:
               chr1:72082299-72082549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               276-525
               

               Cow position:
               chr1:81777988-81778239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               282-525
               

               Cow position:
               chr1:55778134-55778379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 121
               

               Conread position:
               285-517
               

               Cow position:
               chr1:82654207-82654438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 194
               

               Conread position:
               285-520
               

               Cow position:
               chr1:21088981-21089219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               285-520
               

               Cow position:
               chr1:26584650-26584887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 116
               

               Conread position:
               285-520
               

               Cow position:
               chr1:59207529-59207291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-520
               

               Cow position:
               chr1:71561195-71560957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-521
               

               Cow position:
               chr1:20830445-20830683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 227
               

               Conread position:
               285-521
               

               Cow position:
               chr1:99914991-99915224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               42, 135
               

               Conread position:
               285-524
               

               Cow position:
               chr1:21116291-21116045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               64, 90
               

               Conread position:
               285-525
               

               Cow position:
               chr1:3384390-3384146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 179
               

               Conread position:
               285-525
               

               Cow position:
               chr1:3933707-3933467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 75
               

               Conread position:
               285-525
               

               Cow position:
               chr1:10724131-10724372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 24
               

               Conread position:
               285-525
               

               Cow position:
               chr1:17011185-17010945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               285-525
               

               Cow position:
               chr1:17035044-17034802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 190
               

               Conread position:
               285-525
               

               Cow position:
               chr1:25053843-25054080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               42, 200
               

               Conread position:
               285-525
               

               Cow position:
               chr1:29363845-29364088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr1:30074418-30074663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:32566374-32566138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 44
               

               Conread position:
               285-525
               

               Cow position:
               chr1:33713621-33713874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:33852819-33853062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:33897810-33898053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:39545337-39545577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 189
               

               Conread position:
               285-525
               

               Cow position:
               chr1:40056654-40056897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:40683192-40682949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:50210292-50210049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:52357709-52357466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:56724694-56724938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:57423282-57423039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:62243103-62242860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:65387862-65388105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:69404550-69404793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:69416731-69416502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:74285129-74284886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:76619929-76619686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:76750422-76750179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:77923258-77923501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr1:79455403-79455162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               42, 211
               

               Conread position:
               285-525
               

               Cow position:
               chr1:79635445-79635206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 82
               

               Conread position:
               285-525
               

               Cow position:
               chr1:80357620-80357377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:81862434-81862190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 180
               

               Conread position:
               285-525
               

               Cow position:
               chr1:82565663-82565906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:82922613-82922371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 203
               

               Conread position:
               285-525
               

               Cow position:
               chr1:85793231-85793475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:86546587-86546344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:91891569-91891328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:91900572-91900815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr1:93856064-93856305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:94661219-94661462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr1:102433490-102433241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               42, 216
               

               Conread position:
               285-527
               

               Cow position:
               chr1:24652813-24653059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               285-527
               

               Cow position:
               chr1:55275480-55275235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 123
               

               Conread position:
               285-527
               

               Cow position:
               chr1:56192614-56192369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-527
               

               Cow position:
               chr1:62804625-62804384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 164
               

               Conread position:
               287-525
               

               Cow position:
               chr1:88268543-88268305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               287-527
               

               Cow position:
               chr1:27112880-27112641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               40, 99
               

               Conread position:
               288-525
               

               Cow position:
               chr1:42737983-42738221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 132
               

               Conread position:
               288-525
               

               Cow position:
               chr1:67002708-67002946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 168
               

               Conread position:
               288-525
               

               Cow position:
               chr1:73069505-73069267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               39, 114
               

               Conread position:
               288-525
               

               Cow position:
               chr1:82477529-82477769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               288-527
               

               Cow position:
               chr1:18240671-18240439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               289-525
               

               Cow position:
               chr1:1828756-1828517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               289-525
               

               Cow position:
               chr1:8826606-8826847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               291-525
               

               Cow position:
               chr1:48248459-48248696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 90
               

               Conread position:
               294-508
               

               Cow position:
               chr1:88387786-88388000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 93
               

               Conread position:
               295-519
               

               Cow position:
               chr1:30520349-30520576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               295-521
               

               Cow position:
               chr1:26517329-26517100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-521
               

               Cow position:
               chr1:40966857-40966628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr1:28874627-28874861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr1:33552489-33552730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr1:57364786-57364550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr1:63604211-63603978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-527
               

               Cow position:
               chr1:30533464-30533227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               296-519
               

               Cow position:
               chr1:56142783-56142556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               297-525
               

               Cow position:
               chr1:72185318-72185083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               30, 164
               

               Conread position:
               298-516
               

               Cow position:
               chr1:57972033-57971810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               50, 30
               

               Conread position:
               299-525
               

               Cow position:
               chr1:57569395-57569623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               302-525
               

               Cow position:
               chr1:62921126-62921352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               306-525
               

               Cow position:
               chr1:102550075-102550288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               19, 139
               

               Conread position:
               312-526
               

               Cow position:
               chr1:22844061-22844271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 56
               

               Conread position:
               314-525
               

               Cow position:
               chr1:82911250-82911036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               317-525
               

               Cow position:
               chr1:72037966-72037761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               26, 115
               

               Conread position:
               323-525
               

               Cow position:
               chr1:89482540-89482741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               16, 153
               

               Conread position:
               325-527
               

               Cow position:
               chr1:27542724-27542931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 69
               

               Conread position:
               328-524
               

               Cow position:
               chr1:18194105-18194302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               328-525
               

               Cow position:
               chr1:86611699-86611903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               135, 18
               

               Conread position:
               328-525
               

               Cow position:
               chr1:101012589-101012391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               160
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               331-493
               

               Cow position:
               chr1:86508297-86508134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               332-525
               

               Cow position:
               chr1:34683492-34683691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 52
               

               Conread position:
               332-527
               

               Cow position:
               chr1:57696353-57696157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 34
               

               Conread position:
               340-524
               

               Cow position:
               chr1:19184713-19184523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               342-525
               

               Cow position:
               chr1:98617179-98616996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               146
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               355-525
               

               Cow position:
               chr1:5355313-5355143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               361-525
               

               Cow position:
               chr1:38476937-38477101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               67, 74
               

               Conread position:
               361-525
               

               Cow position:
               chr1:72985082-72985242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               371-525
               

               Cow position:
               chr1:21996376-21996223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               390-524
               

               Cow position:
               chr1:67287996-67288130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               283-524
               

               Cow position:
               chr10:29732311-29732553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 149
               

               Conread position:
               284-525
               

               Cow position:
               chr10:10172306-10172550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               285-520
               

               Cow position:
               chr10:21898559-21898322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               285-521
               

               Cow position:
               chr10:39778559-39778321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 184
               

               Conread position:
               285-523
               

               Cow position:
               chr10:2119439-2119197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               285-524
               

               Cow position:
               chr10:39439724-39439966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr10:1379068-1379311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr10:8291618-8291855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               58, 167
               

               Conread position:
               285-525
               

               Cow position:
               chr10:14805418-14805658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 201
               

               Conread position:
               285-525
               

               Cow position:
               chr10:19143044-19142801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 133
               

               Conread position:
               285-525
               

               Cow position:
               chr10:25339668-25339911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr10:25651857-25651614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr10:29011096-29010855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               42, 136
               

               Conread position:
               285-525
               

               Cow position:
               chr10:29631231-29630980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               35, 127
               

               Conread position:
               285-525
               

               Cow position:
               chr10:33870857-33871100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr10:38343794-38343551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr10:41158985-41159228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr10:41634963-41635206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               58, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr10:41878496-41878739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr10:57555763-57555520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr10:57988424-57988180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-526
               

               Cow position:
               chr10:38544320-38544083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 152
               

               Conread position:
               285-527
               

               Cow position:
               chr10:19706065-19705811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               22, 211
               

               Conread position:
               285-527
               

               Cow position:
               chr10:19841251-19841496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-527
               

               Cow position:
               chr10:22102806-22103049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               42, 16
               

               Conread position:
               285-527
               

               Cow position:
               chr10:22346532-22346776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               42, 105
               

               Conread position:
               285-527
               

               Cow position:
               chr10:46192713-46192962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               36, 48
               

               Conread position:
               286-525
               

               Cow position:
               chr10:22644575-22644813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               287-525
               

               Cow position:
               chr10:40150610-40150383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr10:31525311-31525543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 124
               

               Conread position:
               289-525
               

               Cow position:
               chr10:20369534-20369298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 27
               

               Conread position:
               291-524
               

               Cow position:
               chr10:16478320-16478553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               33, 85
               

               Conread position:
               291-524
               

               Cow position:
               chr10:31539710-31539944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               36, 134
               

               Conread position:
               291-525
               

               Cow position:
               chr10:23409670-23409435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               291-525
               

               Cow position:
               chr10:28255830-28255593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               291-525
               

               Cow position:
               chr10:34666164-34665926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               9, 38
               

               Conread position:
               291-525
               

               Cow position:
               chr10:39039737-39039501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               292-525
               

               Cow position:
               chr10:8325533-8325298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               294-525
               

               Cow position:
               chr10:14853432-14853666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               21, 38
               

               Conread position:
               294-525
               

               Cow position:
               chr10:29109405-29109170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               294-525
               

               Cow position:
               chr10:47908517-47908742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               295-525
               

               Cow position:
               chr10:29845077-29844843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr10:30683909-30683676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr10:37771466-37771699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               296-525
               

               Cow position:
               chr10:14334255-14334031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               31, 65
               

               Conread position:
               296-525
               

               Cow position:
               chr10:32702339-32702571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               298-525
               

               Cow position:
               chr10:41774028-41773802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 24
               

               Conread position:
               328-524
               

               Cow position:
               chr10:22619468-22619278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               333-525
               

               Cow position:
               chr10:29101107-29100911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               361-522
               

               Cow position:
               chr10:7510278-7510117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               365-525
               

               Cow position:
               chr10:50313298-50313459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 80
               

               Conread position:
               372-525
               

               Cow position:
               chr10:17957933-17957780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               402-525
               

               Cow position:
               chr10:21451110-21451233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               29-250
               

               Cow position:
               chr11:12119298-12119073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               10, 47
               

               Conread position:
               39-249
               

               Cow position:
               chr11:54126462-54126687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 23
               

               Conread position:
               276-525
               

               Cow position:
               chr11:58135598-58135843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               282-525
               

               Cow position:
               chr11:27657636-27657892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               285-509
               

               Cow position:
               chr11:1488960-1488733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-517
               

               Cow position:
               chr11:17106470-17106235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-519
               

               Cow position:
               chr11:17281269-17281030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-519
               

               Cow position:
               chr11:27668783-27668546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-520
               

               Cow position:
               chr11:75553798-75553566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               30, 100
               

               Conread position:
               285-521
               

               Cow position:
               chr11:23249258-23249019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-524
               

               Cow position:
               chr11:43513413-43513175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               42, 149
               

               Conread position:
               285-525
               

               Cow position:
               chr11:4026400-4026157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:9733469-9733228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr11:12357190-12356947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:15986463-15986697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               42, 33
               

               Conread position:
               285-525
               

               Cow position:
               chr11:17547369-17547612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:19062865-19062622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:23881239-23881476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               42, 101
               

               Conread position:
               285-525
               

               Cow position:
               chr11:24394526-24394768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               42, 104
               

               Conread position:
               285-525
               

               Cow position:
               chr11:26069830-26069591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 201
               

               Conread position:
               285-525
               

               Cow position:
               chr11:26123715-26123464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               42, 174
               

               Conread position:
               285-525
               

               Cow position:
               chr11:28228556-28228313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:32079576-32079333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:44582131-44581888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:47738328-47738093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr11:50836456-50836213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr11:63654122-63653878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:67451704-67451947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:72309826-72309585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               48, 24
               

               Conread position:
               285-525
               

               Cow position:
               chr11:85392622-85392379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr11:86876672-86876429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-526
               

               Cow position:
               chr11:63647273-63647517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               63, 39
               

               Conread position:
               285-527
               

               Cow position:
               chr11:11590179-11590423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 123
               

               Conread position:
               285-527
               

               Cow position:
               chr11:29667386-29667138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               42, 157
               

               Conread position:
               285-527
               

               Cow position:
               chr11:87142793-87143038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               286-525
               

               Cow position:
               chr11:67154891-67155132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 148
               

               Conread position:
               287-520
               

               Cow position:
               chr11:25393401-25393638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               287-525
               

               Cow position:
               chr11:49238745-49238502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               38, 204
               

               Conread position:
               287-525
               

               Cow position:
               chr11:53285959-53285718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               287-527
               

               Cow position:
               chr11:37802278-37802519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               288-498
               

               Cow position:
               chr11:10848667-10848878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               288-521
               

               Cow position:
               chr11:17119129-17118891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 151
               

               Conread position:
               288-524
               

               Cow position:
               chr11:7117626-7117865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 150
               

               Conread position:
               288-525
               

               Cow position:
               chr11:4055115-4054882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               36, 163
               

               Conread position:
               288-525
               

               Cow position:
               chr11:30253443-30253678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 40
               

               Conread position:
               288-525
               

               Cow position:
               chr11:61399890-61399650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 36
               

               Conread position:
               288-527
               

               Cow position:
               chr11:41169481-41169236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 150
               

               Conread position:
               289-525
               

               Cow position:
               chr11:35894689-35894452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               35, 45
               

               Conread position:
               291-524
               

               Cow position:
               chr11:4062689-4062458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               33, 25
               

               Conread position:
               291-525
               

               Cow position:
               chr11:10056715-10056954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               7, 197
               

               Conread position:
               294-525
               

               Cow position:
               chr11:47759061-47758824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 131
               

               Conread position:
               294-525
               

               Cow position:
               chr11:52420611-52420846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 30
               

               Conread position:
               295-525
               

               Cow position:
               chr11:4268959-4268723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr11:38834226-38833993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               296-521
               

               Cow position:
               chr11:26548752-26548976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               296-525
               

               Cow position:
               chr11:10957041-10957270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               331-525
               

               Cow position:
               chr11:40405793-40405598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               153
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               337-525
               

               Cow position:
               chr11:44253344-44253527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               342-525
               

               Cow position:
               chr11:44041979-44042162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               352-525
               

               Cow position:
               chr11:12318745-12318572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               361-525
               

               Cow position:
               chr11:76372732-76372577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               373-525
               

               Cow position:
               chr11:42371115-42371267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               377-525
               

               Cow position:
               chr11:32479512-32479364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               385-525
               

               Cow position:
               chr11:28713637-28713778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               179-525
               

               Cow position:
               chr12:21428198-21427851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               285-519
               

               Cow position:
               chr12:24994464-24994227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-520
               

               Cow position:
               chr12:21092228-21091990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               39, 162
               

               Conread position:
               285-520
               

               Cow position:
               chr12:42606752-42606514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-520
               

               Cow position:
               chr12:43913337-43913575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-521
               

               Cow position:
               chr12:1404000-1404235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               189, 42
               

               Conread position:
               285-525
               

               Cow position:
               chr12:6405137-6404897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 48
               

               Conread position:
               285-525
               

               Cow position:
               chr12:8676591-8676348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               39, 53
               

               Conread position:
               285-525
               

               Cow position:
               chr12:11099725-11099976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr12:14660851-14660608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr12:20461731-20461488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr12:23140676-23140429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr12:25262014-25261778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               58, 144
               

               Conread position:
               285-525
               

               Cow position:
               chr12:27854466-27854223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr12:37560512-37560755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               286-525
               

               Cow position:
               chr12:15950307-15950066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 199
               

               Conread position:
               289-518
               

               Cow position:
               chr12:21253083-21252851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               289-525
               

               Cow position:
               chr12:3362438-3362676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 99
               

               Conread position:
               289-526
               

               Cow position:
               chr12:33042863-33043095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               35, 194
               

               Conread position:
               293-525
               

               Cow position:
               chr12:25098969-25098734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               7, 193
               

               Conread position:
               294-520
               

               Cow position:
               chr12:21210172-21210400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               33, 181
               

               Conread position:
               294-524
               

               Cow position:
               chr12:3209482-3209711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               49, 15
               

               Conread position:
               294-525
               

               Cow position:
               chr12:21429516-21429750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               295-524
               

               Cow position:
               chr12:42858026-42857794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               13, 191
               

               Conread position:
               304-525
               

               Cow position:
               chr12:5145190-5145398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               323-527
               

               Cow position:
               chr12:756723-756916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               20, 62
               

               Conread position:
               358-525
               

               Cow position:
               chr12:33120983-33121159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               376-525
               

               Cow position:
               chr12:20844470-20844618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               386-525
               

               Cow position:
               chr12:25267809-25267670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               278-525
               

               Cow position:
               chr13:34869244-34869494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               283-521
               

               Cow position:
               chr13:13901145-13901383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 24
               

               Conread position:
               285-469
               

               Cow position:
               chr13:34324299-34324112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               151
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               285-500
               

               Cow position:
               chr13:17309742-17309960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-517
               

               Cow position:
               chr13:679030-679262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 143
               

               Conread position:
               285-520
               

               Cow position:
               chr13:13326206-13326443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 44
               

               Conread position:
               285-525
               

               Cow position:
               chr13:3653034-3652786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:4942664-4942907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:6358403-6358646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:6666860-6666617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 103
               

               Conread position:
               285-525
               

               Cow position:
               chr13:9298725-9298968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:11388277-11388519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 16
               

               Conread position:
               285-525
               

               Cow position:
               chr13:11797428-11797185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:14401829-14401586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:16253237-16252995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               36, 185
               

               Conread position:
               285-525
               

               Cow position:
               chr13:21697543-21697786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:30304476-30304719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:31508186-31508428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 217
               

               Conread position:
               285-525
               

               Cow position:
               chr13:31611032-31610795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 146
               

               Conread position:
               285-525
               

               Cow position:
               chr13:32923857-32923612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:33335036-33334799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               58, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr13:33524677-33524434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr13:47575371-47575614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr13:50193116-50192876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 43
               

               Conread position:
               288-477
               

               Cow position:
               chr13:20540974-20540780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr13:5500717-5500477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr13:34938720-34938960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 101
               

               Conread position:
               288-525
               

               Cow position:
               chr13:35758563-35758802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 180
               

               Conread position:
               288-525
               

               Cow position:
               chr13:42090411-42090171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr13:60424032-60424270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 178
               

               Conread position:
               288-525
               

               Cow position:
               chr13:60648523-60648285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 180
               

               Conread position:
               289-525
               

               Cow position:
               chr13:43981804-43981563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               291-525
               

               Cow position:
               chr13:48358913-48359148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               36, 111
               

               Conread position:
               295-525
               

               Cow position:
               chr13:32735903-32735670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr13:34343195-34343428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               298-524
               

               Cow position:
               chr13:30654135-30653905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               45, 30
               

               Conread position:
               311-525
               

               Cow position:
               chr13:36348831-36348618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               13, 175
               

               Conread position:
               346-525
               

               Cow position:
               chr13:19128292-19128114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               361-525
               

               Cow position:
               chr13:3760271-3760107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               361-525
               

               Cow position:
               chr13:26845584-26845741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               361-525
               

               Cow position:
               chr13:53553167-53553006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               376-524
               

               Cow position:
               chr13:15543974-15544123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               376-525
               

               Cow position:
               chr13:30239720-30239869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               379-521
               

               Cow position:
               chr13:34908320-34908179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               391-525
               

               Cow position:
               chr13:11388595-11388729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               283-525
               

               Cow position:
               chr14:18417654-18417901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               284-525
               

               Cow position:
               chr14:33678216-33678459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               44, 104
               

               Conread position:
               285-520
               

               Cow position:
               chr14:48826429-48826667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-521
               

               Cow position:
               chr14:21381117-21380876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               33, 106
               

               Conread position:
               285-525
               

               Cow position:
               chr14:751721-751962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:1659609-1659852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:2287421-2287662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:5530212-5530455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:7473506-7473749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:11152998-11152755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:11476138-11475893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:11654711-11654481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               46, 146
               

               Conread position:
               285-525
               

               Cow position:
               chr14:15274684-15274444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 16
               

               Conread position:
               285-525
               

               Cow position:
               chr14:16808168-16807926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 229
               

               Conread position:
               285-525
               

               Cow position:
               chr14:17490184-17489943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 108
               

               Conread position:
               285-525
               

               Cow position:
               chr14:17687651-17687893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               42, 136
               

               Conread position:
               285-525
               

               Cow position:
               chr14:19327108-19326865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:22030295-22030055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 230
               

               Conread position:
               285-525
               

               Cow position:
               chr14:35930744-35930983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:37225308-37225553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:43559391-43559633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               42, 222
               

               Conread position:
               285-525
               

               Cow position:
               chr14:44290218-44290461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr14:44380503-44380743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 78
               

               Conread position:
               285-525
               

               Cow position:
               chr14:45670881-45670634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr14:48601195-48600955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 200
               

               Conread position:
               286-510
               

               Cow position:
               chr14:37454791-37454559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               26, 18
               

               Conread position:
               288-497
               

               Cow position:
               chr14:12611567-12611779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr14:191202-191447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr14:12741879-12741649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               39, 130
               

               Conread position:
               288-525
               

               Cow position:
               chr14:13304110-13304352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               288-525
               

               Cow position:
               chr14:17759740-17759501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               289-525
               

               Cow position:
               chr14:16342743-16342504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 35
               

               Conread position:
               291-525
               

               Cow position:
               chr14:35425277-35425514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               24, 34
               

               Conread position:
               291-525
               

               Cow position:
               chr14:45710577-45710341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 10
               

               Conread position:
               291-525
               

               Cow position:
               chr14:47643450-47643684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               36, 175
               

               Conread position:
               294-519
               

               Cow position:
               chr14:45027838-45027611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 99
               

               Conread position:
               294-525
               

               Cow position:
               chr14:29046509-29046274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               294-525
               

               Cow position:
               chr14:33712241-33712472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 149
               

               Conread position:
               294-527
               

               Cow position:
               chr14:30660908-30660670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr14:16918551-16918324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               32, 125
               

               Conread position:
               295-525
               

               Cow position:
               chr14:20783632-20783865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               298-525
               

               Cow position:
               chr14:30595187-30594957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               13, 97
               

               Conread position:
               313-525
               

               Cow position:
               chr14:33392740-33392527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 15
               

               Conread position:
               314-506
               

               Cow position:
               chr14:31149435-31149630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 48
               

               Conread position:
               326-525
               

               Cow position:
               chr14:35384426-35384228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               17, 120
               

               Conread position:
               329-520
               

               Cow position:
               chr14:47656586-47656771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               22, 100
               

               Conread position:
               332-525
               

               Cow position:
               chr14:30583197-30583003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               334-518
               

               Cow position:
               chr14:13462666-13462846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               150
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               342-519
               

               Cow position:
               chr14:44690394-44690570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               346-525
               

               Cow position:
               chr14:45163442-45163618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               146
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               354-525
               

               Cow position:
               chr14:50112585-50112756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               357-525
               

               Cow position:
               chr14:46502931-46503099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               144, 65
               

               Conread position:
               274-525
               

               Cow position:
               chr15:51218866-51219119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 11
               

               Conread position:
               275-525
               

               Cow position:
               chr15:3260177-3259926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               68, 10
               

               Conread position:
               276-518
               

               Cow position:
               chr15:9737782-9737538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               284-525
               

               Cow position:
               chr15:17077412-17077169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               285-466
               

               Cow position:
               chr15:7892195-7892011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               148
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-521
               

               Cow position:
               chr15:2926459-2926682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               39, 92
               

               Conread position:
               285-524
               

               Cow position:
               chr15:20411750-20411990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:58808-59047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               285-525
               

               Cow position:
               chr15:107153-107396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:1767987-1768223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               39, 103
               

               Conread position:
               285-525
               

               Cow position:
               chr15:1833486-1833244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 108
               

               Conread position:
               285-525
               

               Cow position:
               chr15:2588295-2588052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:2646497-2646258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr15:2901109-2900865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:4197619-4197862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:4386909-4387152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:4726354-4726597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:4766343-4766588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:6561739-6561982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:6590964-6590720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 95
               

               Conread position:
               285-525
               

               Cow position:
               chr15:6613874-6614116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr15:7564149-7564393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:7929725-7929964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               30, 125
               

               Conread position:
               285-525
               

               Cow position:
               chr15:13390169-13389929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               36, 24
               

               Conread position:
               285-525
               

               Cow position:
               chr15:14581211-14580964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:15345956-15345713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:24296243-24296482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               42, 83
               

               Conread position:
               285-525
               

               Cow position:
               chr15:24794973-24795213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 37
               

               Conread position:
               285-525
               

               Cow position:
               chr15:25205854-25205611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr15:25653914-25653665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 162
               

               Conread position:
               285-525
               

               Cow position:
               chr15:31360016-31360259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:32492731-32492488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:33122530-33122773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:35752153-35751910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:35898624-35898381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr15:38981818-38982058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               35, 7
               

               Conread position:
               285-525
               

               Cow position:
               chr15:41659320-41659563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-526
               

               Cow position:
               chr15:17294207-17294445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               39, 100
               

               Conread position:
               285-527
               

               Cow position:
               chr15:2412303-2412062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               42, 127
               

               Conread position:
               286-525
               

               Cow position:
               chr15:53339376-53339618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               286-526
               

               Cow position:
               chr15:6279630-6279870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               38, 78
               

               Conread position:
               286-527
               

               Cow position:
               chr15:5981512-5981755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               46, 69
               

               Conread position:
               287-525
               

               Cow position:
               chr15:1765472-1765711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 70
               

               Conread position:
               287-527
               

               Cow position:
               chr15:4672588-4672830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 88
               

               Conread position:
               287-527
               

               Cow position:
               chr15:17149269-17149508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 42
               

               Conread position:
               288-517
               

               Cow position:
               chr15:31846599-31846832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 53
               

               Conread position:
               288-524
               

               Cow position:
               chr15:368492-368259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 36
               

               Conread position:
               288-525
               

               Cow position:
               chr15:4813738-4813985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               12, 98
               

               Conread position:
               288-525
               

               Cow position:
               chr15:5010476-5010237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 187
               

               Conread position:
               288-525
               

               Cow position:
               chr15:6154771-6154532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 218
               

               Conread position:
               289-525
               

               Cow position:
               chr15:8698774-8698539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               41, 49
               

               Conread position:
               289-525
               

               Cow position:
               chr15:20355437-20355203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               23, 132
               

               Conread position:
               294-511
               

               Cow position:
               chr15:32712398-32712618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               294-525
               

               Cow position:
               chr15:9003062-9002827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr15:2077811-2078044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr15:4923308-4923540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr15:7838431-7838664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr15:17036495-17036262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               32, 59
               

               Conread position:
               296-475
               

               Cow position:
               chr15:51675878-51676066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 180
               

               Conread position:
               296-511
               

               Cow position:
               chr15:17216985-17216772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               31, 43
               

               Conread position:
               296-526
               

               Cow position:
               chr15:8100624-8100847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               180
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               31, 141
               

               Conread position:
               297-520
               

               Cow position:
               chr15:1299383-1299140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               299-519
               

               Cow position:
               chr15:4927535-4927770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               299-525
               

               Cow position:
               chr15:7546038-7546268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               299-525
               

               Cow position:
               chr15:51613305-51613532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               17, 31
               

               Conread position:
               306-521
               

               Cow position:
               chr15:4962793-4963004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               321-525
               

               Cow position:
               chr15:32695355-32695554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               22, 59
               

               Conread position:
               324-524
               

               Cow position:
               chr15:6329247-6329435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               16, 138
               

               Conread position:
               328-525
               

               Cow position:
               chr15:1783529-1783726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               156
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               15, 5
               

               Conread position:
               328-525
               

               Cow position:
               chr15:8811107-8810922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               15, 111
               

               Conread position:
               331-525
               

               Cow position:
               chr15:4081035-4080840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               332-526
               

               Cow position:
               chr15:31859755-31859560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               333-527
               

               Cow position:
               chr15:29970112-29969924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               131, 24
               

               Conread position:
               337-517
               

               Cow position:
               chr15:19395752-19395565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               361-525
               

               Cow position:
               chr15:9431169-9431332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               119, 82
               

               Conread position:
               276-524
               

               Cow position:
               chr16:54324533-54324277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               283-521
               

               Cow position:
               chr16:25258611-25258851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 26
               

               Conread position:
               284-525
               

               Cow position:
               chr16:10439066-10439311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               285-520
               

               Cow position:
               chr16:1861045-1861283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 104
               

               Conread position:
               285-520
               

               Cow position:
               chr16:41572199-41572447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-524
               

               Cow position:
               chr16:25086422-25086663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 140
               

               Conread position:
               285-524
               

               Cow position:
               chr16:25342781-25343023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 102
               

               Conread position:
               285-524
               

               Cow position:
               chr16:27732572-27732330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:33338-33584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               62, 43
               

               Conread position:
               285-525
               

               Cow position:
               chr16:1432997-1433237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               42, 170
               

               Conread position:
               285-525
               

               Cow position:
               chr16:2237956-2237718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 46
               

               Conread position:
               285-525
               

               Cow position:
               chr16:2482325-2482094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               285-525
               

               Cow position:
               chr16:2726403-2726162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:3088394-3088151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:5119209-5118966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:5527575-5527333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr16:5662649-5662892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:8815295-8815055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 87
               

               Conread position:
               285-525
               

               Cow position:
               chr16:15568067-15568310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:23535091-23534848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:23984110-23984355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               42, 113
               

               Conread position:
               285-525
               

               Cow position:
               chr16:25442439-25442682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:25456671-25456428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:28196431-28196188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:28470260-28470009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:29047832-29048075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:37480045-37479803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               42, 16
               

               Conread position:
               285-525
               

               Cow position:
               chr16:40295351-40295114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               58, 117
               

               Conread position:
               285-525
               

               Cow position:
               chr16:41753800-41753560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 162
               

               Conread position:
               285-525
               

               Cow position:
               chr16:43896452-43896209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr16:51084967-51085210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               285-527
               

               Cow position:
               chr16:12537138-12536897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 123
               

               Conread position:
               286-469
               

               Cow position:
               chr16:9931544-9931729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               43, 139
               

               Conread position:
               286-521
               

               Cow position:
               chr16:51403064-51402827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 92
               

               Conread position:
               287-525
               

               Cow position:
               chr16:3330744-3330982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 44
               

               Conread position:
               287-525
               

               Cow position:
               chr16:16240477-16240241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               46, 62
               

               Conread position:
               288-525
               

               Cow position:
               chr16:5485539-5485776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               288-525
               

               Cow position:
               chr16:15185892-15186131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 189
               

               Conread position:
               289-524
               

               Cow position:
               chr16:20202786-20203027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               289-525
               

               Cow position:
               chr16:1959808-1959573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               35, 197
               

               Conread position:
               289-525
               

               Cow position:
               chr16:23809169-23809403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 35
               

               Conread position:
               290-526
               

               Cow position:
               chr16:27712367-27712132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               30, 39
               

               Conread position:
               291-520
               

               Cow position:
               chr16:25934002-25934234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 39
               

               Conread position:
               291-521
               

               Cow position:
               chr16:16229133-16229356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               291-525
               

               Cow position:
               chr16:34531105-34531340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 38
               

               Conread position:
               294-525
               

               Cow position:
               chr16:19778833-19778599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               295-525
               

               Cow position:
               chr16:14664994-14664760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               295-526
               

               Cow position:
               chr16:40557125-40556881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               296-519
               

               Cow position:
               chr16:46501024-46501247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               20, 70
               

               Conread position:
               296-521
               

               Cow position:
               chr16:1566633-1566415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               304-527
               

               Cow position:
               chr16:18618296-18618074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               311-525
               

               Cow position:
               chr16:20193336-20193119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               328-525
               

               Cow position:
               chr16:7465459-7465657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               21, 58
               

               Conread position:
               328-525
               

               Cow position:
               chr16:23251115-23250928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               15, 136
               

               Conread position:
               330-525
               

               Cow position:
               chr16:3526169-3525968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               17, 149
               

               Conread position:
               332-527
               

               Cow position:
               chr16:3828481-3828286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               15, 85
               

               Conread position:
               333-525
               

               Cow position:
               chr16:4474746-4474549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               367-525
               

               Cow position:
               chr16:26664620-26664779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               276-525
               

               Cow position:
               chr17:136006-136255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               67, 9
               

               Conread position:
               285-524
               

               Cow position:
               chr17:6261243-6261485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-524
               

               Cow position:
               chr17:28027120-28026881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 202
               

               Conread position:
               285-525
               

               Cow position:
               chr17:39824-40067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:3640521-3640278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:3654905-3654662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr17:4061488-4061736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               40, 130
               

               Conread position:
               285-525
               

               Cow position:
               chr17:6069927-6070170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:9751088-9751333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               51, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr17:11086343-11086100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 153
               

               Conread position:
               285-525
               

               Cow position:
               chr17:11784242-11784494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:13967311-13967553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr17:14215642-14215421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               42, 72
               

               Conread position:
               285-525
               

               Cow position:
               chr17:14240889-14241131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 192
               

               Conread position:
               285-525
               

               Cow position:
               chr17:19267450-19267218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               111, 42
               

               Conread position:
               285-525
               

               Cow position:
               chr17:20080497-20080269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               39, 98
               

               Conread position:
               285-525
               

               Cow position:
               chr17:20086389-20086149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               42, 9
               

               Conread position:
               285-525
               

               Cow position:
               chr17:20489697-20489931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               52, 39
               

               Conread position:
               285-525
               

               Cow position:
               chr17:23323064-23322821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:24028620-24028375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:34157506-34157748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 229
               

               Conread position:
               285-525
               

               Cow position:
               chr17:39049599-39049844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               285-525
               

               Cow position:
               chr17:43989886-43990129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               285-526
               

               Cow position:
               chr17:251520-251772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               39, 142
               

               Conread position:
               285-527
               

               Cow position:
               chr17:19608818-19608575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               63, 41
               

               Conread position:
               286-492
               

               Cow position:
               chr17:22133650-22133861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               47, 38
               

               Conread position:
               288-519
               

               Cow position:
               chr17:29302143-29302378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               
288-524UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr17:21418941-21419180 (view  custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               33, 0
               
288-525UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:15852080-15852320 (view  custom track)

               
               
               
Alignm length: 241

               
               
               
Alignm identity: 187

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 39, 0
288-525UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:20099089-20098854 (view  custom track)

               
               
               
Alignm length: 241

               
               
               
Alignm identity: 187

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 36, 32

               
               
               Conread position:289-524
               
               
               Cow position:chr17:4083407-4083640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 131

               
               
               Conread position:289-525
               
               
               Cow position:chr17:17257302-17257063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:289-525
               
               
               Cow position:chr17:42267050-42267283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:289-526
               
               
               Cow position:chr17:5228009-5228249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:289-527
               
               
               Cow position:chr17:8203323-8203565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:290-525
               
               
               Cow position:chr17:1786575-1786343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:290-525
               
               
               Cow position:chr17:2077605-2077365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:291-520
               
               
               Cow position:chr17:24335951-24336175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:294-460
               
               
               Cow position:chr17:1704264-1704433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-525
               
               
               Cow position:chr17:2246693-2246459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:295-527
               
               
               Cow position:chr17:20403814-20404045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):32, 151

               
               
               Conread position:311-525
               
               
               Cow position:chr17:2554865-2554648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:319-525
               
               
               Cow position:chr17:20415039-20414833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:328-525
               
               
               Cow position:chr17:4346150-4345952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:328-525
               
               
               Cow position:chr17:19980707-19980509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:333-525
               
               
               Cow position:chr17:1881700-1881892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:354-525
               
               
               Cow position:chr17:22561353-22561523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:354-525
               
               
               Cow position:chr17:34159183-34159353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:361-517
               
               
               Cow position:chr17:20231281-20231437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:361-525
               
               
               Cow position:chr17:16121144-16120979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:138
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:364-526
               
               
               Cow position:chr17:33284222-33284064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:367-525
               
               
               Cow position:chr17:45271650-45271492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:377-522
               
               
               Cow position:chr17:53598-53454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:390-527
               
               
               Cow position:chr17:2175412-2175549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:401-525
               
               
               Cow position:chr17:34574246-34574370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:285-519
               
               
               Cow position:chr18:27538455-27538692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr18:51482448-51482688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr18:14131983-14132225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:285-525
               
               
               Cow position:chr18:14417559-14417804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr18:23799241-23799479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:285-525
               
               
               Cow position:chr18:24617725-24617968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr18:25352852-25353097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:285-525
               
               
               Cow position:chr18:25921983-25922226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:285-525
               
               
               Cow position:chr18:29238484-29238721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:285-525
               
               
               Cow position:chr18:33270500-33270734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:285-525
               
               
               Cow position:chr18:36510209-36510452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:285-525
               
               
               Cow position:chr18:37507555-37507798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:285-525
               
               
               Cow position:chr18:51343275-51343518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr18:51461458-51461215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr18:56485053-56484816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:285-527
               
               
               Cow position:chr18:37490420-37490659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:288-521
               
               
               Cow position:chr18:27988781-27989017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr18:16089715-16089955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr18:16175025-16174785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:289-525
               
               
               Cow position:chr18:51695298-51695538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:289-527
               
               
               Cow position:chr18:19485739-19485980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:295-520
               
               
               Cow position:chr18:35054731-35054954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:303-525
               
               
               Cow position:chr18:11273247-11273023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:313-525
               
               
               Cow position:chr18:42516246-42516464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 190

               
               
               Conread position:333-525
               
               
               Cow position:chr18:52654458-52654650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:347-525
               
               
               Cow position:chr18:23660844-23660666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:362-525
               
               
               Cow position:chr18:54169851-54169688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:405-525
               
               
               Cow position:chr18:54025523-54025643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-258
               
               
               Cow position:chr19:40365436-40365685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:276-525
               
               
               Cow position:chr19:173850-174099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:284-517
               
               
               Cow position:chr19:40886144-40885910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:284-521
               
               
               Cow position:chr19:342842-343086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:285-506
               
               
               Cow position:chr19:33596171-33595947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 161

               
               
               Conread position:285-521
               
               
               Cow position:chr19:33943164-33943403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr19:39392107-39392348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr19:774201-774444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr19:892039-891799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 171

               
               
               Conread position:285-525
               
               
               Cow position:chr19:1587640-1587397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr19:2272519-2272280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 200

               
               
               Conread position:285-525
               
               
               Cow position:chr19:5899912-5899670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:285-525
               
               
               Cow position:chr19:16319032-16318789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr19:28580078-28579826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr19:33875008-33875251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr19:39183948-39183704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr19:39666949-39666706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:285-525
               
               
               Cow position:chr19:52150085-52149842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr19:32204853-32205098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:288-524
               
               
               Cow position:chr19:12774704-12774943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:290-525
               
               
               Cow position:chr19:40471098-40470859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:291-525
               
               
               Cow position:chr19:7343670-7343907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:291-525
               
               
               Cow position:chr19:28595140-28595377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:291-525
               
               
               Cow position:chr19:42582854-42582617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:294-525
               
               
               Cow position:chr19:166522-166290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 133

               
               
               Conread position:295-520
               
               
               Cow position:chr19:40850857-40850634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:295-524
               
               
               Cow position:chr19:5730448-5730683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr19:206114-206352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr19:48860152-48859914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:328-525
               
               
               Cow position:chr19:547947-547741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:339-513
               
               
               Cow position:chr19:256941-257113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:402-525
               
               
               Cow position:chr19:39689480-39689605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:30-249
               
               
               Cow position:chr2:34998275-34998508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 215

               
               
               Conread position:283-525
               
               
               Cow position:chr2:11158083-11157838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:283-525
               
               
               Cow position:chr2:72187455-72187216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:284-525
               
               
               Cow position:chr2:36051999-36051743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:285-510
               
               
               Cow position:chr2:52617516-52617743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:285-521
               
               
               Cow position:chr2:6880409-6880637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:285-521
               
               
               Cow position:chr2:47602225-47601985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr2:34052198-34052444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:285-525
               
               
               Cow position:chr2:174527-174284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:285-525
               
               
               Cow position:chr2:364027-363785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:285-525
               
               
               Cow position:chr2:780368-780124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:2087129-2086886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:4402110-4401868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:285-525
               
               
               Cow position:chr2:8119584-8119825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:285-525
               
               
               Cow position:chr2:9908954-9909206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:10185188-10184943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:10610605-10610362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:11558889-11559132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:12223238-12222995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:12479226-12478978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:16901295-16901538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:18242864-18242623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:285-525
               
               
               Cow position:chr2:19012404-19012638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:285-525
               
               
               Cow position:chr2:24925608-24925848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:285-525
               
               
               Cow position:chr2:24926457-24926697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:285-525
               
               
               Cow position:chr2:25887509-25887266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:26904715-26904490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):219, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr2:28648570-28648326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:32434285-32434047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:285-525
               
               
               Cow position:chr2:32639984-32640227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:36981429-36981672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:39422665-39422906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr2:45938661-45938419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 190

               
               
               Conread position:285-525
               
               
               Cow position:chr2:52063800-52064042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:53540975-53541217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr2:54738528-54738769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:285-525
               
               
               Cow position:chr2:55483116-55482878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:285-525
               
               
               Cow position:chr2:56888777-56889020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:72688647-72688890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr2:78743601-78743837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 160

               
               
               Conread position:285-525
               
               
               Cow position:chr2:81258217-81258459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 200

               
               
               Conread position:285-527
               
               
               Cow position:chr2:32064999-32064753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr2:43446007-43446245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:286-523
               
               
               Cow position:chr2:72681095-72680856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:286-525
               
               
               Cow position:chr2:33082925-33082683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:286-525
               
               
               Cow position:chr2:78763714-78763935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:287-518
               
               
               Cow position:chr2:48815322-48815550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:287-525
               
               
               Cow position:chr2:50982106-50981865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:288-519
               
               
               Cow position:chr2:22078946-22079183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-520
               
               
               Cow position:chr2:44933946-44933714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:288-525
               
               
               Cow position:chr2:281641-281403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:288-525
               
               
               Cow position:chr2:14824089-14824318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:288-525
               
               
               Cow position:chr2:24471588-24471355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:288-525
               
               
               Cow position:chr2:25028260-25028023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:288-525
               
               
               Cow position:chr2:28794281-28794528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr2:42361225-42360987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:288-525
               
               
               Cow position:chr2:42669666-42669419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:288-525
               
               
               Cow position:chr2:54693986-54694220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:288-525
               
               
               Cow position:chr2:80291720-80291480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:288-526
               
               
               Cow position:chr2:15575808-15575563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:288-527
               
               
               Cow position:chr2:28639805-28639558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:289-516
               
               
               Cow position:chr2:34563619-34563399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:289-520
               
               
               Cow position:chr2:62729555-62729788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:289-524
               
               
               Cow position:chr2:34594924-34594690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):176, 23

               
               
               Conread position:289-525
               
               
               Cow position:chr2:9188990-9188763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:289-525
               
               
               Cow position:chr2:16074496-16074257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:289-525
               
               
               Cow position:chr2:32656685-32656917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:291-525
               
               
               Cow position:chr2:12696423-12696186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:293-461
               
               
               Cow position:chr2:2411736-2411568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:294-525
               
               
               Cow position:chr2:41047981-41047745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:294-527
               
               
               Cow position:chr2:35357052-35357272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:295-525
               
               
               Cow position:chr2:41181163-41181396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr2:47811901-47812133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:296-525
               
               
               Cow position:chr2:10264359-10264131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:296-525
               
               
               Cow position:chr2:11730814-11731034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:296-525
               
               
               Cow position:chr2:13044657-13044425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:311-519
               
               
               Cow position:chr2:314824-314614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 164

               
               
               Conread position:312-525
               
               
               Cow position:chr2:5869066-5868851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:314-525
               
               
               Cow position:chr2:210971-210757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:332-525
               
               
               Cow position:chr2:975597-975398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:332-525
               
               
               Cow position:chr2:53005158-53004964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:342-527
               
               
               Cow position:chr2:41155014-41155206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):86, 67

               
               
               Conread position:362-525
               
               
               Cow position:chr2:67188728-67188889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:372-525
               
               
               Cow position:chr2:44989716-44989563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:375-525
               
               
               Cow position:chr2:46049104-46048954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:402-525
               
               
               Cow position:chr2:62727930-62728053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:405-525
               
               
               Cow position:chr2:10466750-10466870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:276-527
               
               
               Cow position:chr20:13764445-13764699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:285-519
               
               
               Cow position:chr20:21717984-21718229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr20:15067010-15067248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:285-524
               
               
               Cow position:chr20:12041982-12042223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:285-524
               
               
               Cow position:chr20:23800442-23800684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:285-525
               
               
               Cow position:chr20:824325-824568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:9344509-9344747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:285-525
               
               
               Cow position:chr20:9547205-9547447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:285-525
               
               
               Cow position:chr20:15096336-15096092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr20:17660187-17659943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:19439474-19439717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr20:20441393-20441150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:21916195-21916438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:23468108-23467867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:25899246-25899489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:26054132-26053890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr20:28564022-28563775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:29950083-29950326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr20:41364089-41363842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:285-527
               
               
               Cow position:chr20:10101459-10101219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:285-527
               
               
               Cow position:chr20:20753246-20753016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):189, 24

               
               
               Conread position:288-521
               
               
               Cow position:chr20:13678282-13678043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr20:5536505-5536745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr20:24615344-24615110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:288-525
               
               
               Cow position:chr20:25849268-25849029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:289-525
               
               
               Cow position:chr20:30687149-30687386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:295-525
               
               
               Cow position:chr20:35126230-35126457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 136

               
               
               Conread position:296-525
               
               
               Cow position:chr20:28162394-28162626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:305-506
               
               
               Cow position:chr20:19214557-19214763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:331-524
               
               
               Cow position:chr20:16178142-16177948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:283-507
               
               
               Cow position:chr21:2880157-2879931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:283-525
               
               
               Cow position:chr21:18816586-18816346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:285-519
               
               
               Cow position:chr21:26635487-26635250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-520
               
               
               Cow position:chr21:2512520-2512757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:285-522
               
               
               Cow position:chr21:20742968-20742730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:285-524
               
               
               Cow position:chr21:4588335-4588103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:285-525
               
               
               Cow position:chr21:2417879-2418117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:285-525
               
               
               Cow position:chr21:5018810-5019055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr21:6414354-6414111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr21:10568369-10568611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:285-525
               
               
               Cow position:chr21:19612430-19612673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr21:25125280-25125519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:285-525
               
               
               Cow position:chr21:26849355-26849118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:285-525
               
               
               Cow position:chr21:27285130-27285367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:285-525
               
               
               Cow position:chr21:33253853-33254094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr21:33710819-33711062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr21:38802107-38802350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr21:39426742-39426977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr21:47647001-47647245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr21:2539409-2539164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 191

               
               
               Conread position:285-527
               
               
               Cow position:chr21:6626199-6626447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr21:7591328-7591571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:285-527
               
               
               Cow position:chr21:40270002-40269757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr21:44764282-44764039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:286-521
               
               
               Cow position:chr21:13298264-13298500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:286-527
               
               
               Cow position:chr21:21916911-21917145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:287-524
               
               
               Cow position:chr21:997175-996925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:287-525
               
               
               Cow position:chr21:2712583-2712809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:288-525
               
               
               Cow position:chr21:30712-30941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:288-525
               
               
               Cow position:chr21:28257095-28257334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:288-527
               
               
               Cow position:chr21:26836863-26837105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr21:30563344-30563577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 131

               
               
               Conread position:289-527
               
               
               Cow position:chr21:1688495-1688255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:289-527
               
               
               Cow position:chr21:9893647-9893882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:290-525
               
               
               Cow position:chr21:26649032-26648801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:290-525
               
               
               Cow position:chr21:37372901-37373139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:294-503
               
               
               Cow position:chr21:21701589-21701803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:294-525
               
               
               Cow position:chr21:38023811-38024042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:294-527
               
               
               Cow position:chr21:34655507-34655745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr21:3780454-3780687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:295-525
               
               
               Cow position:chr21:27069284-27069051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr21:30597790-30597557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:302-525
               
               
               Cow position:chr21:31250682-31250906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:333-525
               
               
               Cow position:chr21:1194167-1194349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:358-525
               
               
               Cow position:chr21:26402011-26401845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:374-520
               
               
               Cow position:chr21:37124579-37124432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:283-525
               
               
               Cow position:chr22:15852919-15853163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 205

               
               
               Conread position:285-488
               
               
               Cow position:chr22:8736849-8736645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:285-497
               
               
               Cow position:chr22:8120283-8120068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-518
               
               
               Cow position:chr22:35670167-35669936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:285-519
               
               
               Cow position:chr22:6333208-6333446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:285-520
               
               
               Cow position:chr22:296945-297187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:285-520
               
               
               Cow position:chr22:27308279-27308041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr22:559210-558971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr22:1519531-1519295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:285-524
               
               
               Cow position:chr22:13766860-13767104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:285-524
               
               
               Cow position:chr22:37142018-37142247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:285-525
               
               
               Cow position:chr22:538608-538850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:1880303-1880546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:2563256-2563017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:285-525
               
               
               Cow position:chr22:3276858-3276615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:3803679-3803922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:285-525
               
               
               Cow position:chr22:5313783-5314030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:11803553-11803312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 228

               
               
               Conread position:285-525
               
               
               Cow position:chr22:13774021-13774256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:285-525
               
               
               Cow position:chr22:15310441-15310216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:16202412-16202654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr22:17326959-17326716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:21194999-21194755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:21590921-21591164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:29499039-29499282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr22:31333550-31333307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:285-525
               
               
               Cow position:chr22:32283183-32282940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:34169834-34170076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:285-525
               
               
               Cow position:chr22:34601092-34601328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:285-525
               
               
               Cow position:chr22:36860049-36859807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:285-525
               
               
               Cow position:chr22:37292179-37291935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:38960605-38960849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:285-525
               
               
               Cow position:chr22:39468019-39467774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr22:44492554-44492790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:285-525
               
               
               Cow position:chr22:44935461-44935704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr22:521894-521648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:288-521
               
               
               Cow position:chr22:1323655-1323888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:289-525
               
               
               Cow position:chr22:695115-695361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:289-526
               
               
               Cow position:chr22:1281231-1280992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:289-527
               
               
               Cow position:chr22:29037172-29037405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):54, 123

               
               
               Conread position:291-525
               
               
               Cow position:chr22:290195-289953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:294-516
               
               
               Cow position:chr22:15352380-15352603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:294-525
               
               
               Cow position:chr22:30677206-30676972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr22:44348356-44348126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:295-526
               
               
               Cow position:chr22:45014854-45015088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:296-524
               
               
               Cow position:chr22:5936663-5936436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:297-527
               
               
               Cow position:chr22:46563179-46563412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:298-525
               
               
               Cow position:chr22:46585057-46584827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:299-499
               
               
               Cow position:chr22:11033851-11034058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:303-525
               
               
               Cow position:chr22:8880615-8880839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:306-525
               
               
               Cow position:chr22:28783634-28783855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:311-520
               
               
               Cow position:chr22:41474181-41473969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:314-525
               
               
               Cow position:chr22:9273900-9274109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:318-525
               
               
               Cow position:chr22:36277118-36277313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:323-511
               
               
               Cow position:chr22:37135302-37135489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:328-525
               
               
               Cow position:chr22:18605257-18605059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:330-525
               
               
               Cow position:chr22:21336500-21336696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:331-525
               
               
               Cow position:chr22:6501367-6501174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:332-525
               
               
               Cow position:chr22:48274791-48274603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:333-525
               
               
               Cow position:chr22:44459201-44459398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:364-525
               
               
               Cow position:chr22:8325833-8325996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:390-525
               
               
               Cow position:chr22:1313398-1313264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:608210-608450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:285-525
               
               
               Cow position:chr23:965000-964760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr23:1957665-1957898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:285-525
               
               
               Cow position:chr23:3879591-3879348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:4818517-4818758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):47, 153

               
               
               Conread position:285-525
               
               
               Cow position:chr23:7314405-7314648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:11714371-11714128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:14972461-14972217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:15178558-15178801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:15527072-15527318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:16055268-16055509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 176

               
               
               Conread position:285-525
               
               
               Cow position:chr23:19491046-19491289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:23172273-23172514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:285-525
               
               
               Cow position:chr23:28304410-28304653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:31648537-31648293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:32351267-32351024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr23:38579188-38579409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr23:41141732-41141489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-527
               
               
               Cow position:chr23:2759393-2759638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr23:2793763-2793531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):198, 42

               
               
               Conread position:285-527
               
               
               Cow position:chr23:5873077-5872832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr23:14961457-14961212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 151

               
               
               Conread position:285-527
               
               
               Cow position:chr23:20154732-20154487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:286-527
               
               
               Cow position:chr23:7044703-7044467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:287-516
               
               
               Cow position:chr23:15876072-15875839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr23:4890184-4890420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:288-525
               
               
               Cow position:chr23:36029882-36029646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 145

               
               
               Conread position:288-527
               
               
               Cow position:chr23:15218390-15218148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr23:22145807-22145568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:291-525
               
               
               Cow position:chr23:15041071-15040831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:294-525
               
               
               Cow position:chr23:28218929-28219172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:295-525
               
               
               Cow position:chr23:30237789-30238029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:295-525
               
               
               Cow position:chr23:31164308-31164539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:314-525
               
               
               Cow position:chr23:1400678-1400471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:322-525
               
               
               Cow position:chr23:26158907-26158699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:325-520
               
               
               Cow position:chr23:11074941-11074742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:328-527
               
               
               Cow position:chr23:29478752-29478945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:335-527
               
               
               Cow position:chr23:11931709-11931900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:400-525
               
               
               Cow position:chr23:1340189-1340064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:209-520
               
               
               Cow position:chr24:12108055-12107743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:276-525
               
               
               Cow position:chr24:22972640-22972892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 158

               
               
               Conread position:283-526
               
               
               Cow position:chr24:17410038-17410287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr24:147027-146782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr24:4413962-4413728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:285-525
               
               
               Cow position:chr24:6023503-6023260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:285-525
               
               
               Cow position:chr24:6337967-6338209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:285-525
               
               
               Cow position:chr24:9545639-9545883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:285-525
               
               
               Cow position:chr24:12127526-12127283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr24:12149710-12149462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr24:12238870-12239117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:285-525
               
               
               Cow position:chr24:13179435-13179194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:285-525
               
               
               Cow position:chr24:13189757-13189991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:285-525
               
               
               Cow position:chr24:14383044-14382802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:285-525
               
               
               Cow position:chr24:19834991-19835231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr24:20286328-20286085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr24:29188871-29189113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 217

               
               
               Conread position:285-525
               
               
               Cow position:chr24:38585550-38585308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:285-527
               
               
               Cow position:chr24:5776817-5776572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:287-499
               
               
               Cow position:chr24:12569606-12569819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr24:12087787-12088027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:288-527
               
               
               Cow position:chr24:14755586-14755828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr24:7089413-7089174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:290-525
               
               
               Cow position:chr24:19703075-19703314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:291-525
               
               
               Cow position:chr24:6353728-6353962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:294-525
               
               
               Cow position:chr24:6963157-6962923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:295-510
               
               
               Cow position:chr24:41004081-41004298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:296-525
               
               
               Cow position:chr24:12334135-12333911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:298-525
               
               
               Cow position:chr24:6272992-6272764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:300-525
               
               
               Cow position:chr24:9090458-9090233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:303-525
               
               
               Cow position:chr24:19469006-19468781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:303-525
               
               
               Cow position:chr24:36557958-36557743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:312-525
               
               
               Cow position:chr24:40468781-40469000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:313-525
               
               
               Cow position:chr24:8150712-8150493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:325-525
               
               
               Cow position:chr24:23094398-23094196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:328-517
               
               
               Cow position:chr24:25438231-25438421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:332-527
               
               
               Cow position:chr24:17300271-17300083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:339-525
               
               
               Cow position:chr24:17313035-17312851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):149, 95

               
               
               Conread position:373-525
               
               
               Cow position:chr24:16082825-16082673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:391-525
               
               
               Cow position:chr24:23097070-23096936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:282-525
               
               
               Cow position:chr25:13693124-13692878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr25:12941124-12940883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:285-525
               
               
               Cow position:chr25:13062163-13061920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr25:18888197-18887954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr25:19339052-19338810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:285-525
               
               
               Cow position:chr25:20346436-20346193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr25:20631171-20631414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:285-525
               
               
               Cow position:chr25:25508254-25508494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr25:27021049-27020808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:285-525
               
               
               Cow position:chr25:32581069-32581312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr25:18305686-18305938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:288-524
               
               
               Cow position:chr25:26928826-26929065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:288-525
               
               
               Cow position:chr25:18450884-18451125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:288-525
               
               
               Cow position:chr25:19922090-19922330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:289-515
               
               
               Cow position:chr25:11931244-11931004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr25:35627893-35627658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:295-525
               
               
               Cow position:chr25:18178242-18178482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:295-527
               
               
               Cow position:chr25:35588778-35588544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:299-525
               
               
               Cow position:chr25:33260784-33261013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:351-525
               
               
               Cow position:chr25:28861223-28861398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:368-521
               
               
               Cow position:chr25:13958435-13958593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:393-527
               
               
               Cow position:chr25:33664465-33664332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:285-519
               
               
               Cow position:chr26:9113439-9113673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 201

               
               
               Conread position:285-525
               
               
               Cow position:chr26:2200186-2200429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr26:3029281-3029038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr26:4603603-4603364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 120

               
               
               Conread position:285-525
               
               
               Cow position:chr26:5676689-5676932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr26:6847889-6847658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:285-525
               
               
               Cow position:chr26:12586996-12586753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr26:14895504-14895743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 229

               
               
               Conread position:285-525
               
               
               Cow position:chr26:18853770-18854013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr26:21825125-21824883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:285-525
               
               
               Cow position:chr26:33148317-33148074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-527
               
               
               Cow position:chr26:34013218-34013460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:288-519
               
               
               Cow position:chr26:4327883-4327652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:289-518
               
               
               Cow position:chr26:21007698-21007937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:289-525
               
               
               Cow position:chr26:6805504-6805267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:291-525
               
               
               Cow position:chr26:35336627-35336390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:294-525
               
               
               Cow position:chr26:8871400-8871634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:295-519
               
               
               Cow position:chr26:17395344-17395121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:358-525
               
               
               Cow position:chr26:9560953-9560786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:364-524
               
               
               Cow position:chr26:27989628-27989468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:365-525
               
               
               Cow position:chr26:23888031-23888193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:366-525
               
               
               Cow position:chr26:3226445-3226289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:380-525
               
               
               Cow position:chr26:13773236-13773092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:398-525
               
               
               Cow position:chr26:6424626-6424753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:284-525
               
               
               Cow position:chr27:1210855-1211099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr27:12748536-12748776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr27:3234022-3233779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr27:9331234-9331484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr27:9991713-9991473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:285-525
               
               
               Cow position:chr27:13898812-13899054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:285-525
               
               
               Cow position:chr27:15274567-15274327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:285-525
               
               
               Cow position:chr27:16032903-16032660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr27:26326561-26326804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr27:27664495-27664738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:287-525
               
               
               Cow position:chr27:10327228-10326986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr27:1677068-1676830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 179

               
               
               Conread position:289-525
               
               
               Cow position:chr27:8735674-8735913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 90

               
               
               Conread position:291-525
               
               
               Cow position:chr27:19525050-19525289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:292-521
               
               
               Cow position:chr27:26032361-26032135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:294-524
               
               
               Cow position:chr27:27194847-27194615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:294-527
               
               
               Cow position:chr27:25803187-25802949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:295-520
               
               
               Cow position:chr27:15635832-15635605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:295-525
               
               
               Cow position:chr27:4980882-4981115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:296-527
               
               
               Cow position:chr27:29856206-29856445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:300-521
               
               
               Cow position:chr27:28079923-28080147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:312-525
               
               
               Cow position:chr27:15035584-15035366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:22-249
               
               
               Cow position:chr28:16559071-16558834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:283-510
               
               
               Cow position:chr28:15685011-15685238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):37, 29

               
               
               Conread position:285-509
               
               
               Cow position:chr28:13461515-13461739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:285-521
               
               
               Cow position:chr28:5766276-5766514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr28:5799836-5800074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:285-521
               
               
               Cow position:chr28:12151869-12152109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr28:22259610-22259372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 203

               
               
               Conread position:285-524
               
               
               Cow position:chr28:21361037-21361277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:285-525
               
               
               Cow position:chr28:484050-483807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:784201-784443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 200

               
               
               Conread position:285-525
               
               
               Cow position:chr28:1166350-1166106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:1216291-1216050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:285-525
               
               
               Cow position:chr28:1385865-1385622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:285-525
               
               
               Cow position:chr28:1459639-1459882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:1954899-1955142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr28:3190708-3190465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:5750159-5749916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:6537266-6537023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:285-525
               
               
               Cow position:chr28:7003540-7003787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:7059124-7058881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:7741976-7742220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:7811958-7812207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:10645891-10645651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:285-525
               
               
               Cow position:chr28:11504697-11504454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:285-525
               
               
               Cow position:chr28:17389945-17390190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:18518903-18518660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr28:24590401-24590643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:285-525
               
               
               Cow position:chr28:33253858-33254090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 179

               
               
               Conread position:285-525
               
               
               Cow position:chr28:33638088-33638333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr28:8380581-8380826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:286-527
               
               
               Cow position:chr28:24669143-24669386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:287-525
               
               
               Cow position:chr28:12648149-12647905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):40, 225

               
               
               Conread position:288-525
               
               
               Cow position:chr28:5939035-5939275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr28:31591106-31591346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr28:34595779-34596019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-527
               
               
               Cow position:chr28:8719410-8719172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:289-525
               
               
               Cow position:chr28:698824-699063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 126

               
               
               Conread position:289-527
               
               
               Cow position:chr28:24559149-24559389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:291-521
               
               
               Cow position:chr28:25761019-25761247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:291-525
               
               
               Cow position:chr28:7827533-7827765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:294-525
               
               
               Cow position:chr28:1765535-1765764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:294-525
               
               
               Cow position:chr28:9288500-9288734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:295-525
               
               
               Cow position:chr28:10580320-10580085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr28:14703829-14703596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr28:15034557-15034324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:295-525
               
               
               Cow position:chr28:23023780-23024006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 180

               
               
               Conread position:295-525
               
               
               Cow position:chr28:26424708-26424474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:295-527
               
               
               Cow position:chr28:12408671-12408434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:296-521
               
               
               Cow position:chr28:1813378-1813151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:296-525
               
               
               Cow position:chr28:32790839-32790612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:298-527
               
               
               Cow position:chr28:2086022-2086254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:299-506
               
               
               Cow position:chr28:523855-524065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:308-525
               
               
               Cow position:chr28:34202086-34201866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:314-525
               
               
               Cow position:chr28:10067489-10067273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:349-518
               
               
               Cow position:chr28:7828204-7828364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:361-527
               
               
               Cow position:chr28:5814832-5814994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:363-525
               
               
               Cow position:chr28:15998728-15998890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:370-527
               
               
               Cow position:chr28:18302278-18302117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:376-525
               
               
               Cow position:chr28:11953620-11953768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:400-525
               
               
               Cow position:chr28:5567813-5567938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:285-520
               
               
               Cow position:chr29:21431344-21431106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-521
               
               
               Cow position:chr29:13018206-13018437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 100

               
               
               Conread position:285-524
               
               
               Cow position:chr29:2839834-2839590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:285-524
               
               
               Cow position:chr29:16345720-16345962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr29:45461255-45461496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:46952-46710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:609140-608897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:2101347-2101589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 203

               
               
               Conread position:285-525
               
               
               Cow position:chr29:2465368-2465125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:285-525
               
               
               Cow position:chr29:2691671-2691913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:285-525
               
               
               Cow position:chr29:5959083-5959326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:285-525
               
               
               Cow position:chr29:7845898-7846141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:10022824-10022581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:13583589-13583832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:13622350-13622107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:285-525
               
               
               Cow position:chr29:14210044-14209801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:16024071-16024314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:19526778-19526535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:19621771-19621516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:19655128-19655369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:285-525
               
               
               Cow position:chr29:19889094-19889334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr29:25931013-25930767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:26163325-26163085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr29:27180245-27180002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:27812599-27812834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:285-525
               
               
               Cow position:chr29:31182910-31183153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr29:32558243-32558000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr29:34798303-34798061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:285-525
               
               
               Cow position:chr29:35298418-35298661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:38207156-38206913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr29:39078203-39077960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:40501499-40501256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr29:42803900-42804142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:285-525
               
               
               Cow position:chr29:45206031-45206281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr29:16172594-16172356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr29:32541602-32541847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:287-527
               
               
               Cow position:chr29:36634872-36634631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:288-525
               
               
               Cow position:chr29:13851360-13851127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:288-525
               
               
               Cow position:chr29:20252676-20252923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr29:23977634-23977874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-527
               
               
               Cow position:chr29:9641274-9641032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:288-527
               
               
               Cow position:chr29:32287760-32287999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:288-527
               
               
               Cow position:chr29:32892288-32892527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:289-522
               
               
               Cow position:chr29:5981199-5980968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:289-525
               
               
               Cow position:chr29:2948868-2948625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:292-525
               
               
               Cow position:chr29:409742-409511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:294-519
               
               
               Cow position:chr29:24335487-24335258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 196

               
               
               Conread position:294-527
               
               
               Cow position:chr29:4633116-4632889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:294-527
               
               
               Cow position:chr29:40612349-40612121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:295-520
               
               
               Cow position:chr29:6264482-6264253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr29:7429608-7429369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr29:38228496-38228728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:296-521
               
               
               Cow position:chr29:5236540-5236771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:311-525
               
               
               Cow position:chr29:9082348-9082136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:312-525
               
               
               Cow position:chr29:43325051-43325268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:319-525
               
               
               Cow position:chr29:17151792-17152002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:331-520
               
               
               Cow position:chr29:14452423-14452611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:331-525
               
               
               Cow position:chr29:10645854-10645660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:331-525
               
               
               Cow position:chr29:17406681-17406875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:340-525
               
               
               Cow position:chr29:21422129-21421948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:346-525
               
               
               Cow position:chr29:27032008-27032184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:22-249
               
               
               Cow position:chr3:18595977-18595732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr3:18061079-18060879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:284-525
               
               
               Cow position:chr3:47087706-47087944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 87

               
               
               Conread position:285-520
               
               
               Cow position:chr3:4736498-4736263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:285-520
               
               
               Cow position:chr3:75184835-75185067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:285-521
               
               
               Cow position:chr3:20382460-20382698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:285-521
               
               
               Cow position:chr3:58948953-58949190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 184

               
               
               Conread position:285-524
               
               
               Cow position:chr3:7478491-7478249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr3:64015943-64015717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:285-525
               
               
               Cow position:chr3:595559-595793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:285-525
               
               
               Cow position:chr3:1742755-1742998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr3:2709444-2709203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:2870212-2870455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:3524435-3524678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:3840093-3839851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 149

               
               
               Conread position:285-525
               
               
               Cow position:chr3:4287513-4287753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:285-525
               
               
               Cow position:chr3:5952763-5952520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:5993657-5993421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr3:7157296-7157052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr3:15054296-15054038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:16224308-16224552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:18812922-18813167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:19755538-19755297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:285-525
               
               
               Cow position:chr3:19799755-19799512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:19880068-19880311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:19945669-19945917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:23206450-23206209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:285-525
               
               
               Cow position:chr3:23288910-23288667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:285-525
               
               
               Cow position:chr3:29329866-29329623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:29575700-29575457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:31416440-31416683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:285-525
               
               
               Cow position:chr3:32621618-32621375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:285-525
               
               
               Cow position:chr3:34029497-34029253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:34505929-34505686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:36863034-36862791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:40338724-40338481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:44925486-44925730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:45034163-45034406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:49543787-49543545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:51857267-51857024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:56146727-56146971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:56295609-56295852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:56338849-56338604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:57483302-57483059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr3:64026711-64026471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:285-525
               
               
               Cow position:chr3:64652034-64652275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:285-525
               
               
               Cow position:chr3:72631486-72631723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:285-525
               
               
               Cow position:chr3:74058950-74059192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:285-525
               
               
               Cow position:chr3:77425024-77425258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:285-526
               
               
               Cow position:chr3:48229091-48228848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:285-526
               
               
               Cow position:chr3:50916764-50917005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:285-527
               
               
               Cow position:chr3:24444676-24444432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:285-527
               
               
               Cow position:chr3:53517033-53517278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:287-509
               
               
               Cow position:chr3:77444831-77445054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:287-525
               
               
               Cow position:chr3:24644639-24644880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:288-500
               
               
               Cow position:chr3:42448542-42448757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:288-524
               
               
               Cow position:chr3:49136139-49135899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr3:7247961-7248199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 131

               
               
               Conread position:288-525
               
               
               Cow position:chr3:21181271-21181031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr3:68698546-68698308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):39, 155

               
               
               Conread position:288-525
               
               
               Cow position:chr3:68872328-68872088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr3:6687218-6687454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:289-525
               
               
               Cow position:chr3:46503978-46504216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:289-525
               
               
               Cow position:chr3:63240815-63240577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:290-525
               
               
               Cow position:chr3:38494668-38494906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:291-525
               
               
               Cow position:chr3:36877231-36876993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:291-525
               
               
               Cow position:chr3:45975932-45976166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:291-527
               
               
               Cow position:chr3:78025994-78025753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 209

               
               
               Conread position:294-525
               
               
               Cow position:chr3:16076779-16077010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:294-525
               
               
               Cow position:chr3:65208618-65208842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:295-525
               
               
               Cow position:chr3:30315980-30316214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr3:40824826-40825059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:295-525
               
               
               Cow position:chr3:48057927-48057694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:295-525
               
               
               Cow position:chr3:66621630-66621862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 193

               
               
               Conread position:295-525
               
               
               Cow position:chr3:69932400-69932167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:296-520
               
               
               Cow position:chr3:24457742-24457519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:302-525
               
               
               Cow position:chr3:19940371-19940596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:304-511
               
               
               Cow position:chr3:64356522-64356313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:304-525
               
               
               Cow position:chr3:2509423-2509208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:311-524
               
               
               Cow position:chr3:74851699-74851482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:314-525
               
               
               Cow position:chr3:4029187-4029399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:321-525
               
               
               Cow position:chr3:58784693-58784489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:328-524
               
               
               Cow position:chr3:77578667-77578483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:329-525
               
               
               Cow position:chr3:38868057-38868258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:329-527
               
               
               Cow position:chr3:19720190-19719990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:331-525
               
               
               Cow position:chr3:10242125-10242320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:331-525
               
               
               Cow position:chr3:59863034-59863229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:332-525
               
               
               Cow position:chr3:58127266-58127454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:283-525
               
               
               Cow position:chr4:67682422-67682668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:284-525
               
               
               Cow position:chr4:530643-530888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:285-495
               
               
               Cow position:chr4:12588555-12588767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:285-502
               
               
               Cow position:chr4:46200504-46200284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:285-517
               
               
               Cow position:chr4:10882775-10883011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-520
               
               
               Cow position:chr4:28653265-28653030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:285-520
               
               
               Cow position:chr4:65665167-65664947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr4:36897603-36897839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:285-525
               
               
               Cow position:chr4:98990-98743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:285-525
               
               
               Cow position:chr4:160384-160627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:357132-357375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:827435-827678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:1049036-1048794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:285-525
               
               
               Cow position:chr4:5443598-5443355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:285-525
               
               
               Cow position:chr4:5881383-5881625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:6489139-6488898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:285-525
               
               
               Cow position:chr4:6865280-6865038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr4:9355606-9355849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr4:13494553-13494802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:14387048-14387292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:17092635-17092394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:285-525
               
               
               Cow position:chr4:17244333-17244576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:18338081-18338324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:20236171-20235927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:21359453-21359702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:285-525
               
               
               Cow position:chr4:25598258-25598016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:285-525
               
               
               Cow position:chr4:26876556-26876318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:285-525
               
               
               Cow position:chr4:30472440-30472683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr4:32213399-32213642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr4:33022411-33022169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:285-525
               
               
               Cow position:chr4:33071607-33071369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:285-525
               
               
               Cow position:chr4:33494782-33495025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:41955990-41956233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:41960127-41960369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:285-525
               
               
               Cow position:chr4:43318409-43318166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr4:44726805-44727048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:285-525
               
               
               Cow position:chr4:44779992-44779751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:285-525
               
               
               Cow position:chr4:57985219-57985461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:285-526
               
               
               Cow position:chr4:34178020-34177785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:285-527
               
               
               Cow position:chr4:43882332-43882574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-527
               
               
               Cow position:chr4:48028088-48028330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:287-520
               
               
               Cow position:chr4:19094206-19094442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:288-525
               
               
               Cow position:chr4:16639840-16640080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr4:33596753-33596989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:288-527
               
               
               Cow position:chr4:60262932-60262699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:289-525
               
               
               Cow position:chr4:1929411-1929172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:291-525
               
               
               Cow position:chr4:41191399-41191162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):5, 11

               
               
               Conread position:291-525
               
               
               Cow position:chr4:44742019-44741795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:294-525
               
               
               Cow position:chr4:6267955-6267721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-525
               
               
               Cow position:chr4:6567615-6567849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-527
               
               
               Cow position:chr4:28149653-28149885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:296-525
               
               
               Cow position:chr4:65916504-65916732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:298-525
               
               
               Cow position:chr4:14139615-14139841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:298-525
               
               
               Cow position:chr4:20241759-20241990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:300-525
               
               
               Cow position:chr4:2089599-2089824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:307-521
               
               
               Cow position:chr4:60649694-60649914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:312-525
               
               
               Cow position:chr4:8702803-8703023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:313-480
               
               
               Cow position:chr4:46666176-46666346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:313-525
               
               
               Cow position:chr4:42405871-42406085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):11, 7

               
               
               Conread position:327-486
               
               
               Cow position:chr4:67381952-67382108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:328-525
               
               
               Cow position:chr4:43867466-43867664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:328-527
               
               
               Cow position:chr4:68837726-68837525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:333-527
               
               
               Cow position:chr4:67797627-67797435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:334-525
               
               
               Cow position:chr4:34183394-34183208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:359-525
               
               
               Cow position:chr4:43898238-43898068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:391-525
               
               
               Cow position:chr4:65222424-65222290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:276-527
               
               
               Cow position:chr5:3502786-3502531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:283-525
               
               
               Cow position:chr5:46777721-46777966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:285-519
               
               
               Cow position:chr5:29434424-29434196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-523
               
               
               Cow position:chr5:49757380-49757139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:285-525
               
               
               Cow position:chr5:987738-987495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:2915764-2916007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:3787267-3787510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:4684474-4684232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:4756853-4756610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:5666253-5666018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:285-525
               
               
               Cow position:chr5:6587258-6587015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:10774933-10774690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:10813420-10813177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:12731385-12731142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:18400368-18400131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:285-525
               
               
               Cow position:chr5:18560077-18559837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):57, 182

               
               
               Conread position:285-525
               
               
               Cow position:chr5:20108231-20108475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:23830990-23830754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:285-525
               
               
               Cow position:chr5:26077863-26077620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr5:28242356-28242587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:285-525
               
               
               Cow position:chr5:31100105-31099863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:32774095-32774338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr5:35301428-35301671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr5:37378456-37378699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr5:37733679-37733926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:40131272-40131029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr5:45701639-45701890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:47829748-47829502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr5:49223162-49222917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr5:53946160-53946401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:285-525
               
               
               Cow position:chr5:55629317-55629556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:285-525
               
               
               Cow position:chr5:57481209-57480969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr5:64780684-64780441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr5:307083-306839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-527
               
               
               Cow position:chr5:27197939-27198183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:285-527
               
               
               Cow position:chr5:34190244-34190497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr5:58197346-58197591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:287-525
               
               
               Cow position:chr5:7810916-7810677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:287-527
               
               
               Cow position:chr5:32166809-32166568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 48

               
               
               Conread position:288-520
               
               
               Cow position:chr5:7142732-7142505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:288-525
               
               
               Cow position:chr5:10842048-10841807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:288-525
               
               
               Cow position:chr5:18121149-18120909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr5:23958997-23958757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr5:34201611-34201366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr5:41376521-41376281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:288-526
               
               
               Cow position:chr5:46669254-46669502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 193

               
               
               Conread position:289-519
               
               
               Cow position:chr5:40758253-40758487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr5:4017864-4017641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:289-525
               
               
               Cow position:chr5:18274086-18274320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):38, 171

               
               
               Conread position:289-525
               
               
               Cow position:chr5:46004540-46004304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:291-519
               
               
               Cow position:chr5:11115435-11115207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:291-525
               
               
               Cow position:chr5:4070552-4070789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:291-525
               
               
               Cow position:chr5:24099982-24100222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:294-520
               
               
               Cow position:chr5:31122248-31122019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-525
               
               
               Cow position:chr5:41527459-41527229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 153

               
               
               Conread position:295-524
               
               
               Cow position:chr5:49487829-49488056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:295-525
               
               
               Cow position:chr5:10855477-10855245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:295-525
               
               
               Cow position:chr5:10920178-10920408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:295-525
               
               
               Cow position:chr5:34697990-34698224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr5:57816353-57816120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:296-525
               
               
               Cow position:chr5:2975131-2975363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:298-525
               
               
               Cow position:chr5:14658108-14657879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:304-511
               
               
               Cow position:chr5:47893217-47893009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:331-527
               
               
               Cow position:chr5:12642057-12641858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:332-525
               
               
               Cow position:chr5:58191382-58191187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:338-525
               
               
               Cow position:chr5:3424743-3424934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):5, 32

               
               
               Conread position:361-520
               
               
               Cow position:chr5:40923265-40923108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:378-525
               
               
               Cow position:chr5:37049229-37049376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:386-525
               
               
               Cow position:chr5:49118904-49118765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:276-525
               
               
               Cow position:chr6:64717779-64718032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:284-520
               
               
               Cow position:chr6:57471134-57471373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:284-525
               
               
               Cow position:chr6:6185709-6185953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:285-514
               
               
               Cow position:chr6:238379-238145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-515
               
               
               Cow position:chr6:39374780-39374999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:285-519
               
               
               Cow position:chr6:25215685-25215919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:285-519
               
               
               Cow position:chr6:47047713-47047476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr6:12627170-12627405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:285-524
               
               
               Cow position:chr6:25792289-25792048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:285-524
               
               
               Cow position:chr6:58601946-58602189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:285-525
               
               
               Cow position:chr6:184075-183832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:329996-329755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:285-525
               
               
               Cow position:chr6:477006-477250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:703679-703922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:915100-915342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 140

               
               
               Conread position:285-525
               
               
               Cow position:chr6:1409915-1409672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 191

               
               
               Conread position:285-525
               
               
               Cow position:chr6:1821159-1820918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:285-525
               
               
               Cow position:chr6:2376147-2376385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:2877216-2876974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:285-525
               
               
               Cow position:chr6:3150702-3150946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:5749392-5749635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr6:5948314-5948068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:7139873-7139630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:7177829-7177583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:285-525
               
               
               Cow position:chr6:10250140-10249897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:10645183-10645430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 194

               
               
               Conread position:285-525
               
               
               Cow position:chr6:15139706-15139463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:16591429-16591667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:285-525
               
               
               Cow position:chr6:17596828-17596585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:21974138-21974380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:285-525
               
               
               Cow position:chr6:24240872-24241115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:26669394-26669152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:27375454-27375212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:285-525
               
               
               Cow position:chr6:28187352-28187128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:28490100-28489859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:285-525
               
               
               Cow position:chr6:30273426-30273183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:35875243-35875003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr6:39910801-39911042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:285-525
               
               
               Cow position:chr6:40276550-40276793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr6:40379163-40378921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:285-525
               
               
               Cow position:chr6:44149080-44148838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:285-525
               
               
               Cow position:chr6:45587419-45587658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr6:47041740-47041494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:51731548-51731791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:52694494-52694736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 149

               
               
               Conread position:285-525
               
               
               Cow position:chr6:59594391-59594613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:59617560-59617800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:285-525
               
               
               Cow position:chr6:65820503-65820260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr6:65907320-65907078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:285-525
               
               
               Cow position:chr6:69144035-69144279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:285-527
               
               
               Cow position:chr6:10610321-10610555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:285-527
               
               
               Cow position:chr6:12664853-12664608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:286-527
               
               
               Cow position:chr6:10679885-10680124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:287-525
               
               
               Cow position:chr6:26777698-26777459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:288-525
               
               
               Cow position:chr6:1535108-1534872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:288-525
               
               
               Cow position:chr6:11723728-11723488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr6:27528547-27528309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:288-525
               
               
               Cow position:chr6:39333402-39333159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr6:41228914-41229154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-527
               
               
               Cow position:chr6:10339170-10338933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:288-527
               
               
               Cow position:chr6:38273039-38273281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr6:20559637-20559411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:289-525
               
               
               Cow position:chr6:40326890-40327129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:290-527
               
               
               Cow position:chr6:11269963-11269734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:290-527
               
               
               Cow position:chr6:35418833-35418597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):34, 196

               
               
               Conread position:291-525
               
               
               Cow position:chr6:44002145-44002382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:291-526
               
               
               Cow position:chr6:66233274-66233511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:293-525
               
               
               Cow position:chr6:12533279-12533521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:294-520
               
               
               Cow position:chr6:13848546-13848772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:294-525
               
               
               Cow position:chr6:15478647-15478881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 169

               
               
               Conread position:294-525
               
               
               Cow position:chr6:28104387-28104153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):33, 168

               
               
               Conread position:294-525
               
               
               Cow position:chr6:28703233-28702999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:295-519
               
               
               Cow position:chr6:3572072-3572299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:295-524
               
               
               Cow position:chr6:3486946-3486714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:295-525
               
               
               Cow position:chr6:34890648-34890417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:295-527
               
               
               Cow position:chr6:65843093-65843328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:296-525
               
               
               Cow position:chr6:50125-49895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:296-525
               
               
               Cow position:chr6:18985569-18985786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:296-525
               
               
               Cow position:chr6:21835718-21835488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:296-525
               
               
               Cow position:chr6:36528675-36528908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:296-527
               
               
               Cow position:chr6:66546955-66547185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:297-525
               
               
               Cow position:chr6:14390408-14390639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:297-525
               
               
               Cow position:chr6:51716012-51716243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:309-517
               
               
               Cow position:chr6:15926062-15925859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:328-525
               
               
               Cow position:chr6:17047853-17048051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:340-525
               
               
               Cow position:chr6:65897424-65897238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:345-525
               
               
               Cow position:chr6:38206818-38206995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):138, 64

               
               
               Conread position:347-520
               
               
               Cow position:chr6:34136606-34136433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-486
               
               
               Cow position:chr6:12380775-12380903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:361-520
               
               
               Cow position:chr6:1098503-1098344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:375-525
               
               
               Cow position:chr6:28642978-28642828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:284-525
               
               
               Cow position:chr7:29472021-29472258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 167

               
               
               Conread position:284-525
               
               
               Cow position:chr7:43396855-43396612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:285-519
               
               
               Cow position:chr7:65812380-65812618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-522
               
               
               Cow position:chr7:18445199-18444959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:285-523
               
               
               Cow position:chr7:20557301-20557542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:444701-444458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:546397-546637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:285-525
               
               
               Cow position:chr7:1609078-1608836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:285-525
               
               
               Cow position:chr7:6627847-6627605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:285-525
               
               
               Cow position:chr7:6629742-6629501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:285-525
               
               
               Cow position:chr7:6721698-6721941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:8143418-8143176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:285-525
               
               
               Cow position:chr7:10429867-10429624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:11462581-11462338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:14138036-14137793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 125

               
               
               Conread position:285-525
               
               
               Cow position:chr7:14213818-14213585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:285-525
               
               
               Cow position:chr7:20061045-20061287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr7:20514228-20513987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:285-525
               
               
               Cow position:chr7:21986961-21987204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:23250178-23250421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:24806926-24806684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:285-525
               
               
               Cow position:chr7:27100731-27100490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:285-525
               
               
               Cow position:chr7:27788513-27788756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:285-525
               
               
               Cow position:chr7:30117927-30117687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:285-525
               
               
               Cow position:chr7:33785822-33786065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:39133034-39133287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:39793414-39793657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:42871700-42871943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:45947595-45947351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:46747548-46747791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:48804878-48804635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:49731033-49731276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:52763843-52764086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:54649458-54649701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:55536369-55536124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:61809566-61809809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:62445594-62445350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr7:63387286-63387534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 209

               
               
               Conread position:285-525
               
               
               Cow position:chr7:66070568-66070329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:285-525
               
               
               Cow position:chr7:67430123-67430357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:285-526
               
               
               Cow position:chr7:58337481-58337245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:288-525
               
               
               Cow position:chr7:7260082-7260319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:288-525
               
               
               Cow position:chr7:45952194-45952435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:288-527
               
               
               Cow position:chr7:3157029-3157276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:288-527
               
               
               Cow position:chr7:59685370-59685616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:289-519
               
               
               Cow position:chr7:49828773-49828541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:289-525
               
               
               Cow position:chr7:33311385-33311147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:289-525
               
               
               Cow position:chr7:39096988-39096742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 204

               
               
               Conread position:289-525
               
               
               Cow position:chr7:67490250-67490485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:289-525
               
               
               Cow position:chr7:67495661-67495901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:289-527
               
               
               Cow position:chr7:33070851-33070609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:289-527
               
               
               Cow position:chr7:33333125-33333366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:290-525
               
               
               Cow position:chr7:5261358-5261121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:290-525
               
               
               Cow position:chr7:25441058-25441299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:291-526
               
               
               Cow position:chr7:42305277-42305056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:293-525
               
               
               Cow position:chr7:14345-14110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:293-525
               
               
               Cow position:chr7:31095697-31095463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:294-525
               
               
               Cow position:chr7:20773774-20773543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):33, 174

               
               
               Conread position:294-525
               
               
               Cow position:chr7:67676638-67676871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 176

               
               
               Conread position:295-525
               
               
               Cow position:chr7:3126257-3126490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr7:13532345-13532107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr7:21126111-21125877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr7:21313476-21313711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:295-525
               
               
               Cow position:chr7:38398387-38398618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:295-525
               
               
               Cow position:chr7:60728886-60728656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:295-525
               
               
               Cow position:chr7:64239424-64239191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:296-525
               
               
               Cow position:chr7:61579070-61579301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):31, 192

               
               
               Conread position:298-525
               
               
               Cow position:chr7:37021616-37021850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 221

               
               
               Conread position:320-525
               
               
               Cow position:chr7:949135-949344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:328-525
               
               
               Cow position:chr7:27711034-27711232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:331-525
               
               
               Cow position:chr7:33067121-33066926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:332-527
               
               
               Cow position:chr7:34736790-34736982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:333-525
               
               
               Cow position:chr7:66906852-66907047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:334-525
               
               
               Cow position:chr7:40201561-40201753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:337-525
               
               
               Cow position:chr7:5308492-5308306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:340-525
               
               
               Cow position:chr7:34150556-34150741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:385-520
               
               
               Cow position:chr7:6664973-6665107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:391-525
               
               
               Cow position:chr7:27459063-27458929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:400-525
               
               
               Cow position:chr7:6665162-6665287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:276-524
               
               
               Cow position:chr8:3855288-3855038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:276-525
               
               
               Cow position:chr8:3786366-3786617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:283-525
               
               
               Cow position:chr8:29923609-29923364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:284-525
               
               
               Cow position:chr8:25377720-25377964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:285-517
               
               
               Cow position:chr8:53428231-53428467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:285-520
               
               
               Cow position:chr8:56884271-56884509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:285-521
               
               
               Cow position:chr8:47660577-47660338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr8:1121122-1121363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:285-524
               
               
               Cow position:chr8:5017924-5018164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr8:9538965-9538728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:285-525
               
               
               Cow position:chr8:1320761-1321004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:2168776-2168534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:285-525
               
               
               Cow position:chr8:3748456-3748212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:285-525
               
               
               Cow position:chr8:8516854-8516611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:10741901-10741659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 218

               
               
               Conread position:285-525
               
               
               Cow position:chr8:11834270-11834513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:14255927-14256170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:14256824-14257067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:21250970-21251213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr8:22570560-22570317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:23772384-23772620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:285-525
               
               
               Cow position:chr8:24914577-24914333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:30155846-30156088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:32317804-32317567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:285-525
               
               
               Cow position:chr8:33325795-33326038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:33590127-33590370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:34349415-34349658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr8:37655811-37655568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:37932840-37933083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:38392371-38392613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:285-525
               
               
               Cow position:chr8:39820196-39820439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:42485655-42485897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:285-525
               
               
               Cow position:chr8:44108888-44109132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:285-525
               
               
               Cow position:chr8:45145563-45145317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:45794007-45793768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:285-525
               
               
               Cow position:chr8:47068072-47067829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:47490227-47490466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):42, 143

               
               
               Conread position:285-525
               
               
               Cow position:chr8:47674580-47674823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:48103588-48103828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:285-525
               
               
               Cow position:chr8:51068253-51068010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr8:60062154-60062396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:285-526
               
               
               Cow position:chr8:54016818-54016563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr8:47887588-47887833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:286-527
               
               
               Cow position:chr8:50959867-50959624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:288-517
               
               
               Cow position:chr8:12804530-12804755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:288-525
               
               
               Cow position:chr8:1347503-1347263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr8:8400344-8400116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):195, 33

               
               
               Conread position:288-525
               
               
               Cow position:chr8:35471049-35471289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:289-519
               
               
               Cow position:chr8:41643938-41643705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:289-520
               
               
               Cow position:chr8:44700730-44700963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:289-525
               
               
               Cow position:chr8:2887501-2887739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:289-525
               
               
               Cow position:chr8:50432378-50432157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:291-525
               
               
               Cow position:chr8:58184855-58184629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:294-527
               
               
               Cow position:chr8:36920108-36920340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:295-525
               
               
               Cow position:chr8:14590124-14589890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr8:25524146-25524379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr8:29008373-29008602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:295-525
               
               
               Cow position:chr8:30486648-30486424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):131, 23

               
               
               Conread position:295-525
               
               
               Cow position:chr8:50929351-50929118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr8:50995541-50995774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:296-520
               
               
               Cow position:chr8:42440196-42439968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:296-525
               
               
               Cow position:chr8:59261189-59260961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:298-507
               
               
               Cow position:chr8:42429429-42429642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:302-525
               
               
               Cow position:chr8:24190727-24190953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:302-525
               
               
               Cow position:chr8:30495828-30495606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:305-525
               
               
               Cow position:chr8:9944156-9943939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:310-525
               
               
               Cow position:chr8:46421817-46422031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:319-524
               
               
               Cow position:chr8:41949016-41949224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:323-527
               
               
               Cow position:chr8:49295265-49295064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:327-525
               
               
               Cow position:chr8:44241901-44241704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:331-525
               
               
               Cow position:chr8:25774856-25774660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:332-525
               
               
               Cow position:chr8:49218534-49218729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:342-525
               
               
               Cow position:chr8:27155423-27155227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:342-525
               
               
               Cow position:chr8:45158722-45158539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):140, 37

               
               
               Conread position:351-525
               
               
               Cow position:chr8:45357748-45357573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:379-525
               
               
               Cow position:chr8:46060131-46059985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:379-525
               
               
               Cow position:chr8:60920645-60920791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:404-525
               
               
               Cow position:chr8:61033219-61033339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:405-525
               
               
               Cow position:chr8:42428637-42428517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:284-525
               
               
               Cow position:chr9:650632-650385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:285-517
               
               
               Cow position:chr9:17062987-17062754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:285-520
               
               
               Cow position:chr9:51212080-51212316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-524
               
               
               Cow position:chr9:779422-779183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:285-524
               
               
               Cow position:chr9:31808972-31809214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-524
               
               
               Cow position:chr9:37161417-37161178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chr9:2212537-2212779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 203

               
               
               Conread position:285-525
               
               
               Cow position:chr9:2679664-2679912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr9:7060679-7060426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:285-525
               
               
               Cow position:chr9:8781512-8781288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:9014470-9014710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 98

               
               
               Conread position:285-525
               
               
               Cow position:chr9:10976512-10976755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:18508429-18508186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:21410704-21410945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:25903921-25904161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-525
               
               
               Cow position:chr9:26568000-26568235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:285-525
               
               
               Cow position:chr9:27036299-27036540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:285-525
               
               
               Cow position:chr9:27783582-27783825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:27935777-27936020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chr9:28000915-28001164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:28679362-28679595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:285-525
               
               
               Cow position:chr9:38677541-38677784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:46041850-46041612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:285-525
               
               
               Cow position:chr9:50093840-50093597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:50792110-50792355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chr9:59537497-59537741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr9:1074779-1074533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-526
               
               
               Cow position:chr9:25188487-25188730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 161

               
               
               Conread position:285-527
               
               
               Cow position:chr9:12183033-12182780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:287-525
               
               
               Cow position:chr9:1995008-1994767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:287-525
               
               
               Cow position:chr9:13474376-13474130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:288-521
               
               
               Cow position:chr9:827708-827473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:288-521
               
               
               Cow position:chr9:22436353-22436586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:288-524
               
               
               Cow position:chr9:30673779-30674018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr9:17304575-17304336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:288-525
               
               
               Cow position:chr9:28023200-28023439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 169

               
               
               Conread position:288-525
               
               
               Cow position:chr9:30828141-30828381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr9:31066118-31066358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chr9:51180779-51180540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:289-525
               
               
               Cow position:chr9:47043361-47043600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:289-527
               
               
               Cow position:chr9:9707521-9707760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:291-525
               
               
               Cow position:chr9:129789-129556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:293-521
               
               
               Cow position:chr9:54681341-54681111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:295-525
               
               
               Cow position:chr9:5005392-5005625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:296-527
               
               
               Cow position:chr9:2172348-2172587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:297-527
               
               
               Cow position:chr9:3936047-3935828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:304-527
               
               
               Cow position:chr9:867230-867006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:306-525
               
               
               Cow position:chr9:59509743-59509521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:311-519
               
               
               Cow position:chr9:54925958-54926169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:328-525
               
               
               Cow position:chr9:6709400-6709598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:328-525
               
               
               Cow position:chr9:29026481-29026285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:331-525
               
               
               Cow position:chr9:2000704-2000510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 152

               
               
               Conread position:331-525
               
               
               Cow position:chr9:43665111-43665307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:341-527
               
               
               Cow position:chr9:9328542-9328357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:351-520
               
               
               Cow position:chr9:17312845-17313012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:355-525
               
               
               Cow position:chr9:203824-203654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-525
               
               
               Cow position:chr9:2054417-2054585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:368-525
               
               
               Cow position:chr9:52721918-52722075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:387-525
               
               
               Cow position:chr9:31090679-31090818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:391-525
               
               
               Cow position:chr9:34769649-34769784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:395-525
               
               
               Cow position:chr9:16177101-16177227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:399-521
               
               
               Cow position:chr9:48149785-48149907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:29-249
               
               
               Cow position:chrX:508159-508389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:276-525
               
               
               Cow position:chrX:15600441-15600692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:282-525
               
               
               Cow position:chrX:28664696-28664942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:282-525
               
               
               Cow position:chrX:30201436-30201190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:283-525
               
               
               Cow position:chrX:4300891-4300641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:285-520
               
               
               Cow position:chrX:20333257-20333018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-520
               
               
               Cow position:chrX:21491463-21491702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-524
               
               
               Cow position:chrX:21643598-21643367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:285-525
               
               
               Cow position:chrX:321769-322012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:972072-972325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:1548283-1548527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:2577728-2577969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chrX:2815179-2814936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:2858073-2857830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:3083833-3083591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chrX:3374605-3374362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:285-525
               
               
               Cow position:chrX:3467340-3467100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:285-525
               
               
               Cow position:chrX:5322423-5322181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:5356521-5356277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:285-525
               
               
               Cow position:chrX:5393543-5393300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:6281479-6281236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:6871771-6871529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:285-525
               
               
               Cow position:chrX:7094772-7095015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:9009643-9009883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:285-525
               
               
               Cow position:chrX:11423175-11423418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:11463743-11463500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:12653202-12652958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chrX:12702400-12702155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:13055124-13055367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:285-525
               
               
               Cow position:chrX:13075395-13075156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:285-525
               
               
               Cow position:chrX:13095956-13095717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:285-525
               
               
               Cow position:chrX:13411830-13411583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 196

               
               
               Conread position:285-525
               
               
               Cow position:chrX:13447522-13447279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:14596151-14596394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:14784168-14783929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:285-525
               
               
               Cow position:chrX:15125926-15125686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 230

               
               
               Conread position:285-525
               
               
               Cow position:chrX:15178130-15177889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:285-525
               
               
               Cow position:chrX:16276953-16277196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:16361816-16361573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:16811141-16810900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:285-525
               
               
               Cow position:chrX:17052849-17053098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:18452285-18452528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:18658504-18658261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:18952374-18952130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:20035096-20034854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:285-525
               
               
               Cow position:chrX:21580789-21581032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:21830816-21831061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:22489460-22489703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:23020599-23020842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:23454715-23454472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:27618827-27618589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 193

               
               
               Conread position:285-525
               
               
               Cow position:chrX:28554939-28555181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:285-525
               
               
               Cow position:chrX:28757340-28757097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:29096022-29095779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:29172462-29172220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:285-525
               
               
               Cow position:chrX:30012303-30012546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:30436148-30436391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:32327468-32327705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:285-525
               
               
               Cow position:chrX:35531159-35531402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:36136260-36136027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:285-525
               
               
               Cow position:chrX:37015420-37015663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:37850435-37850678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:37957751-37957508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:38148898-38149138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:285-525
               
               
               Cow position:chrX:39562648-39562405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:285-525
               
               
               Cow position:chrX:42477511-42477269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 203

               
               
               Conread position:286-524
               
               
               Cow position:chrX:27962152-27962376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):145, 17

               
               
               Conread position:286-525
               
               
               Cow position:chrX:45418942-45418701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:287-525
               
               
               Cow position:chrX:6013668-6013425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:287-525
               
               
               Cow position:chrX:22127836-22127590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:287-527
               
               
               Cow position:chrX:30070971-30071221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:288-520
               
               
               Cow position:chrX:35026283-35026514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:288-521
               
               
               Cow position:chrX:27316585-27316821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chrX:8589470-8589726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:288-525
               
               
               Cow position:chrX:12667423-12667663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:288-525
               
               
               Cow position:chrX:23278330-23278570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:288-525
               
               
               Cow position:chrX:26757324-26757081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:288-525
               
               
               Cow position:chrX:29935906-29936145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:288-526
               
               
               Cow position:chrX:2481323-2481085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:288-526
               
               
               Cow position:chrX:27592679-27592442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:288-527
               
               
               Cow position:chrX:28586288-28586530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:289-525
               
               
               Cow position:chrX:11148026-11147786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:289-525
               
               
               Cow position:chrX:12184248-12184487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:289-525
               
               
               Cow position:chrX:14460817-14461055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:289-525
               
               
               Cow position:chrX:22566946-22566709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:289-525
               
               
               Cow position:chrX:28650247-28650019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:289-525
               
               
               Cow position:chrX:32065860-32065621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:289-526
               
               
               Cow position:chrX:28626334-28626096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:291-525
               
               
               Cow position:chrX:673897-673660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:291-525
               
               
               Cow position:chrX:23389218-23388989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:292-525
               
               
               Cow position:chrX:2534765-2534536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:293-525
               
               
               Cow position:chrX:21791926-21792161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:294-525
               
               
               Cow position:chrX:2144280-2144516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:294-525
               
               
               Cow position:chrX:2561547-2561309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-525
               
               
               Cow position:chrX:6241124-6240887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:294-525
               
               
               Cow position:chrX:15623191-15622957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:294-525
               
               
               Cow position:chrX:16780594-16780829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-525
               
               
               Cow position:chrX:17477112-17476873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:294-525
               
               
               Cow position:chrX:22617892-22617658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-525
               
               
               Cow position:chrX:24133972-24133748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:295-525
               
               
               Cow position:chrX:5296243-5296005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:295-525
               
               
               Cow position:chrX:15041230-15040997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:295-525
               
               
               Cow position:chrX:26765883-26765651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:295-525
               
               
               Cow position:chrX:30170536-30170306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:296-525
               
               
               Cow position:chrX:26529279-26529511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:296-525
               
               
               Cow position:chrX:30182613-30182381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:298-525
               
               
               Cow position:chrX:9093960-9094190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:305-525
               
               
               Cow position:chrX:16701015-16701238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:312-525
               
               
               Cow position:chrX:11459508-11459292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:314-525
               
               
               Cow position:chrX:12354856-12355069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:314-525
               
               
               Cow position:chrX:29940565-29940782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:318-525
               
               
               Cow position:chrX:30365462-30365256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:320-525
               
               
               Cow position:chrX:10530448-10530243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:328-527
               
               
               Cow position:chrX:30068493-30068293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:334-516
               
               
               Cow position:chrX:2380864-2381047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:345-521
               
               
               Cow position:chrX:20724333-20724509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-525
               
               
               Cow position:chrX:30168701-30168532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:364-525
               
               
               Cow position:chrX:21507782-21507621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:369-525
               
               
               Cow position:chrX:3142110-3142266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:390-525
               
               
               Cow position:chrX:31726532-31726663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:434-525
               
               
               Cow position:chrX:12284549-12284640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	276-498
Cow position:	chr1:102780794-102780576 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	158
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	67, 9
Conread position:	276-525
Cow position:	chr1:49972631-49972380 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	198
Alignm E-value:	0
Alignm gaps (pig, cow):	51, 9
Conread position:	282-525
Cow position:	chr1:55778134-55778379 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	185
Alignm E-value:	0
Alignm gaps (pig, cow):	45, 121
Conread position:	285-517
Cow position:	chr1:82654207-82654438 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	182
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 194
Conread position:	285-520
Cow position:	chr1:21088981-21089219 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	191
Alignm E-value:	0
Alignm gaps (pig, cow):	47, 39
Conread position:	285-521
Cow position:	chr1:20830445-20830683 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	189
Alignm E-value:	0
Alignm gaps (pig, cow):	45, 227
Conread position:	285-524
Cow position:	chr1:21116291-21116045 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	187
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	64, 90
Conread position:	285-525
Cow position:	chr1:3384390-3384146 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	187
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 179
Conread position:	285-527
Cow position:	chr1:24652813-24653059 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	200
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 0
Conread position:	287-525
Cow position:	chr1:88268543-88268305 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	171
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	29, 43
Conread position:	287-527
Cow position:	chr1:27112880-27112641 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	174
Alignm E-value:	7e-35
Alignm gaps (pig, cow):	40, 99
Conread position:	288-525
Cow position:	chr1:42737983-42738221 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	187
Alignm E-value:	0
Alignm gaps (pig, cow):	35, 132
Conread position:	288-527
Cow position:	chr1:18240671-18240439 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	186
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	36, 16
Conread position:	289-525
Cow position:	chr1:1828756-1828517 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	175
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	35, 0
Conread position:	291-525
Cow position:	chr1:48248459-48248696 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	186
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 90
Conread position:	294-508
Cow position:	chr1:88387786-88388000 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	153
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	33, 93
Conread position:	295-519
Cow position:	chr1:30520349-30520576 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	170
Alignm E-value:	4.00001e-41
Alignm gaps (pig, cow):	19, 0
Conread position:	295-521
Cow position:	chr1:26517329-26517100 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	179
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 0
Conread position:	295-525
Cow position:	chr1:28874627-28874861 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	184
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 0
Conread position:	295-527
Cow position:	chr1:30533464-30533227 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	186
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 0