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Cow genome map

           
Conread name:
           
Pig1-94N05
        

               
Conread position:
               
197-388
               

               
Cow position:
               
chr1:92578593-92578779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
197-389
               

               
Cow position:
               
chr1:55259987-55260183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
5, 125
               

               
Conread position:
               
205-494
               

               
Cow position:
               
chr1:31934740-31934454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
152, 117
               

               
Conread position:
               
208-492
               

               
Cow position:
               
chr1:56618423-56618707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
212-489
               

               
Cow position:
               
chr1:97717348-97717630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
207, 18
               

               
Conread position:
               
213-494
               

               
Cow position:
               
chr1:77232340-77232632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
214-494
               

               
Cow position:
               
chr1:261236-261543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
217-417
               

               
Cow position:
               
chr1:39683919-39684119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
217-496
               

               
Cow position:
               
chr1:6078127-6077839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 205
               

               
Conread position:
               
218-414
               

               
Cow position:
               
chr1:3154805-3155006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
219-411
               

               
Cow position:
               
chr1:49317278-49317465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
219-414
               

               
Cow position:
               
chr1:101866277-101866469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
219-442
               

               
Cow position:
               
chr1:97540866-97540634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
220-360
               

               
Cow position:
               
chr1:101490412-101490270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
220-485
               

               
Cow position:
               
chr1:22730952-22730691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
195, 18
               

               
Conread position:
               
221-494
               

               
Cow position:
               
chr1:48105204-48105492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
6, 172
               

               
Conread position:
               
221-494
               

               
Cow position:
               
chr1:78097148-78096866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
222-414
               

               
Cow position:
               
chr1:30470003-30469809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 125
               

               
Conread position:
               
222-417
               

               
Cow position:
               
chr1:3244435-3244236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 143
               

               
Conread position:
               
222-417
               

               
Cow position:
               
chr1:22461023-22461213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
222-427
               

               
Cow position:
               
chr1:95704023-95703819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 119
               

               
Conread position:
               
222-440
               

               
Cow position:
               
chr1:6759825-6760034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
197, 86
               

               
Conread position:
               
222-441
               

               
Cow position:
               
chr1:56913313-56913529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
134, 98
               

               
Conread position:
               
222-442
               

               
Cow position:
               
chr1:16060789-16061005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
119, 91
               

               
Conread position:
               
222-466
               

               
Cow position:
               
chr1:6731399-6731151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
222-481
               

               
Cow position:
               
chr1:102529634-102529902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
100, 148
               

               
Conread position:
               
222-484
               

               
Cow position:
               
chr1:34686384-34686142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
223-317
               

               
Cow position:
               
chr1:42537082-42537177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
223-390
               

               
Cow position:
               
chr1:64811455-64811287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
223-399
               

               
Cow position:
               
chr1:29971322-29971499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
223-399
               

               
Cow position:
               
chr1:48301232-48301408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
223-414
               

               
Cow position:
               
chr1:40078009-40077822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
223-414
               

               
Cow position:
               
chr1:89297887-89298082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
9, 148
               

               
Conread position:
               
223-414
               

               
Cow position:
               
chr1:89301496-89301691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
9, 148
               

               
Conread position:
               
223-424
               

               
Cow position:
               
chr1:96019446-96019247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
223-426
               

               
Cow position:
               
chr1:70416542-70416745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
196, 97
               

               
Conread position:
               
223-427
               

               
Cow position:
               
chr1:500394-500189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
223-442
               

               
Cow position:
               
chr1:8287412-8287631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
196, 125
               

               
Conread position:
               
223-442
               

               
Cow position:
               
chr1:33846353-33846570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
196, 18
               

               
Conread position:
               
223-442
               

               
Cow position:
               
chr1:35162625-35162409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
223-444
               

               
Cow position:
               
chr1:71789930-71790151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
223-480
               

               
Cow position:
               
chr1:92996668-92996941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 118
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr1:4691808-4691537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr1:6394775-6394500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 95
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr1:43855507-43855243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
197, 83
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr1:68855384-68855104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
86, 99
               

               
Conread position:
               
224-330
               

               
Cow position:
               
chr1:69542637-69542533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
224-410
               

               
Cow position:
               
chr1:87934063-87934239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
224-417
               

               
Cow position:
               
chr1:77098910-77099095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
224-480
               

               
Cow position:
               
chr1:2462588-2462335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
174, 51
               

               
Conread position:
               
224-490
               

               
Cow position:
               
chr1:53651199-53650951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
224-493
               

               
Cow position:
               
chr1:43505743-43505467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
224-494
               

               
Cow position:
               
chr1:6826075-6826353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
224-494
               

               
Cow position:
               
chr1:57053421-57053138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 82
               

               
Conread position:
               
225-319
               

               
Cow position:
               
chr1:36875523-36875430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
225-377
               

               
Cow position:
               
chr1:2715234-2715087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
225-397
               

               
Cow position:
               
chr1:99637036-99637209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
225-399
               

               
Cow position:
               
chr1:75227108-75227277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
225-404
               

               
Cow position:
               
chr1:53457028-53456849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
225-411
               

               
Cow position:
               
chr1:63461094-63460909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
225-411
               

               
Cow position:
               
chr1:72069890-72070083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
225-414
               

               
Cow position:
               
chr1:1605915-1606106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 171
               

               
Conread position:
               
225-414
               

               
Cow position:
               
chr1:73719687-73719489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
225-417
               

               
Cow position:
               
chr1:2075135-2075326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
225-417
               

               
Cow position:
               
chr1:46939661-46939860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
225-424
               

               
Cow position:
               
chr1:76518639-76518439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 19
               

               
Conread position:
               
225-444
               

               
Cow position:
               
chr1:47658567-47658342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr1:65028735-65028473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
195, 24
               

               
Conread position:
               
226-411
               

               
Cow position:
               
chr1:22231866-22231679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
86, 121
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chr1:46172819-46172622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
226-450
               

               
Cow position:
               
chr1:29626696-29626920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
226-468
               

               
Cow position:
               
chr1:76037297-76037541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 122
               

               
Conread position:
               
226-494
               

               
Cow position:
               
chr1:101860272-101860549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
227-342
               

               
Cow position:
               
chr1:67346372-67346259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
227-351
               

               
Cow position:
               
chr1:43052288-43052410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
227-364
               

               
Cow position:
               
chr1:8778124-8778257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 87
               

               
Conread position:
               
227-364
               

               
Cow position:
               
chr1:45680481-45680353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
227-368
               

               
Cow position:
               
chr1:56107124-56107263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr1:101859924-101860071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
227-382
               

               
Cow position:
               
chr1:65160344-65160188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 139
               

               
Conread position:
               
227-382
               

               
Cow position:
               
chr1:83222202-83222044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
227-385
               

               
Cow position:
               
chr1:39095699-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
227-386
               

               
Cow position:
               
chr1:95654199-95654363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
227-390
               

               
Cow position:
               
chr1:95809769-95809603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 159
               

               
Conread position:
               
227-391
               

               
Cow position:
               
chr1:79631319-79631485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
227-392
               

               
Cow position:
               
chr1:36880500-36880336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
227-398
               

               
Cow position:
               
chr1:3271365-3271191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 168
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr1:36018569-36018740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chr1:83641850-83642031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
227-400
               

               
Cow position:
               
chr1:37470705-37470543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
227-405
               

               
Cow position:
               
chr1:100817755-100817580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
227-407
               

               
Cow position:
               
chr1:4329694-4329869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
227-410
               

               
Cow position:
               
chr1:79001631-79001816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr1:94823175-94823364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 120
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr1:527869-528047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr1:9437071-9437264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr1:15875873-15875685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr1:55230187-55230001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr1:60603357-60603552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr1:91743246-91743434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
227-424
               

               
Cow position:
               
chr1:65030284-65030084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr1:70483121-70483324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 79
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chr1:100812088-100812284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
227-435
               

               
Cow position:
               
chr1:12848283-12848073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 121
               

               
Conread position:
               
227-440
               

               
Cow position:
               
chr1:724950-724741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:6790988-6790774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:21954013-21954222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
192, 87
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:24530712-24530501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
192, 87
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:25735082-25734867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:31256013-31256223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:38706639-38706855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:40212134-40212333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:42482414-42482201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 141
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:67919342-67919134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
189, 72
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:77739938-77739721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 119
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:82880848-82880645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:83972978-83972763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:87094999-87095215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:91065943-91066152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
189, 87
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:97232185-97231959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:101177737-101177514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
24, 153
               

               
Conread position:
               
227-442
               

               
Cow position:
               
chr1:102468408-102468618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
227-443
               

               
Cow position:
               
chr1:43311558-43311774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
227-443
               

               
Cow position:
               
chr1:67585766-67585558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 118
               

               
Conread position:
               
227-444
               

               
Cow position:
               
chr1:37726200-37726423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
227-449
               

               
Cow position:
               
chr1:83004879-83004645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 187
               

               
Conread position:
               
227-451
               

               
Cow position:
               
chr1:50585662-50585887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
103, 90
               

               
Conread position:
               
227-455
               

               
Cow position:
               
chr1:53402998-53402768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 136
               

               
Conread position:
               
227-463
               

               
Cow position:
               
chr1:10716719-10716474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 178
               

               
Conread position:
               
227-467
               

               
Cow position:
               
chr1:96272803-96273051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
77, 134
               

               
Conread position:
               
227-468
               

               
Cow position:
               
chr1:816182-816433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 187
               

               
Conread position:
               
227-476
               

               
Cow position:
               
chr1:62998015-62997756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
92, 177
               

               
Conread position:
               
227-488
               

               
Cow position:
               
chr1:7748430-7748168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
227-488
               

               
Cow position:
               
chr1:7752594-7752334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
227-489
               

               
Cow position:
               
chr1:1956126-1956387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
227-490
               

               
Cow position:
               
chr1:1878237-1877975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
84, 136
               

               
Conread position:
               
227-490
               

               
Cow position:
               
chr1:46143250-46143517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
227-490
               

               
Cow position:
               
chr1:81481170-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr1:41697268-41697002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr1:48618033-48618296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 74
               

               
Conread position:
               
227-492
               

               
Cow position:
               
chr1:90904544-90904810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
192, 16
               

               
Conread position:
               
227-493
               

               
Cow position:
               
chr1:71119735-71119459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
227-493
               

               
Cow position:
               
chr1:102785160-102784901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:20667536-20667800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
192, 39
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:22943812-22944084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 107
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:29935176-29935445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:39426804-39427060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
192, 14
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:42256289-42256561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:42541805-42541539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 36
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:50930766-50931035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
173, 78
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:56225996-56225729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 72
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:69227240-69227508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:69551265-69551544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:70422516-70422247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:70538824-70538549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:78839001-78838738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
185, 79
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:90975862-90976143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:91651134-91651418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
227-494
               

               
Cow position:
               
chr1:92684467-92684750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 206
               

               
Conread position:
               
227-496
               

               
Cow position:
               
chr1:79844693-79844406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
60, 255
               

               
Conread position:
               
228-351
               

               
Cow position:
               
chr1:71427557-71427677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
228-377
               

               
Cow position:
               
chr1:8134138-8133988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 118
               

               
Conread position:
               
228-382
               

               
Cow position:
               
chr1:15103097-15102943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
228-399
               

               
Cow position:
               
chr1:53474360-53474199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
228-411
               

               
Cow position:
               
chr1:874876-874685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chr1:19599147-19599333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
228-417
               

               
Cow position:
               
chr1:31765157-31765349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
228-417
               

               
Cow position:
               
chr1:38277813-38278003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
228-417
               

               
Cow position:
               
chr1:63530773-63530583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
228-424
               

               
Cow position:
               
chr1:38544034-38544235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
228-430
               

               
Cow position:
               
chr1:14567429-14567626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
228-442
               

               
Cow position:
               
chr1:6440334-6440550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
228-442
               

               
Cow position:
               
chr1:74832639-74832421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
228-481
               

               
Cow position:
               
chr1:40192489-40192739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
6, 121
               

               
Conread position:
               
228-492
               

               
Cow position:
               
chr1:89388554-89388281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
195, 12
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:8128766-8129029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
191, 42
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:20104478-20104210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:30983277-30983549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
14, 186
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:79004190-79003915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:79164869-79165143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 101
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:97755713-97755458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
180, 15
               

               
Conread position:
               
229-316
               

               
Cow position:
               
chr1:75080327-75080414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
229-338
               

               
Cow position:
               
chr1:24445367-24445476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
229-372
               

               
Cow position:
               
chr1:61560284-61560431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
229-389
               

               
Cow position:
               
chr1:81611538-81611372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
229-393
               

               
Cow position:
               
chr1:54645635-54645476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
229-406
               

               
Cow position:
               
chr1:68730216-68730037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
92, 173
               

               
Conread position:
               
229-410
               

               
Cow position:
               
chr1:90595365-90595538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
229-414
               

               
Cow position:
               
chr1:34731261-34731072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
229-422
               

               
Cow position:
               
chr1:11770030-11770216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
229-440
               

               
Cow position:
               
chr1:49433049-49433263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
229-442
               

               
Cow position:
               
chr1:49980920-49980709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
190, 94
               

               
Conread position:
               
229-446
               

               
Cow position:
               
chr1:86113184-86113405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
229-464
               

               
Cow position:
               
chr1:89872180-89871946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
230-317
               

               
Cow position:
               
chr1:22466634-22466721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-345
               

               
Cow position:
               
chr1:96006940-96007051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
230-373
               

               
Cow position:
               
chr1:93959951-93960093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
230-382
               

               
Cow position:
               
chr1:73374887-73375042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
230-385
               

               
Cow position:
               
chr1:4391057-4391214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
230-385
               

               
Cow position:
               
chr1:73397860-73398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
230-389
               

               
Cow position:
               
chr1:74304868-74305029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 132
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr1:40303759-40303601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr1:47190782-47190945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr1:73644297-73644457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr1:100152494-100152328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
230-397
               

               
Cow position:
               
chr1:42797087-42796922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
230-397
               

               
Cow position:
               
chr1:59551650-59551482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 116
               

               
Conread position:
               
230-397
               

               
Cow position:
               
chr1:100823251-100823082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 118
               

               
Conread position:
               
230-398
               

               
Cow position:
               
chr1:23050646-23050476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr1:3685800-3685637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr1:40284438-40284596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr1:46245525-46245697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 131
               

               
Conread position:
               
230-400
               

               
Cow position:
               
chr1:2523175-2523005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 90
               

               
Conread position:
               
230-405
               

               
Cow position:
               
chr1:50843649-50843815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
230-406
               

               
Cow position:
               
chr1:100552177-100552011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
230-411
               

               
Cow position:
               
chr1:45535978-45535794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
230-411
               

               
Cow position:
               
chr1:78079934-78079750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
230-413
               

               
Cow position:
               
chr1:30028021-30028200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
230-414
               

               
Cow position:
               
chr1:79178842-79178656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
230-414
               

               
Cow position:
               
chr1:89437517-89437690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
230-414
               

               
Cow position:
               
chr1:94712952-94713137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
230-414
               

               
Cow position:
               
chr1:100800558-100800741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 89
               

               
Conread position:
               
230-415
               

               
Cow position:
               
chr1:10617102-10616916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 159
               

               
Conread position:
               
230-415
               

               
Cow position:
               
chr1:69250643-69250459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
179, 69
               

               
Conread position:
               
230-416
               

               
Cow position:
               
chr1:7740154-7739974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
230-416
               

               
Cow position:
               
chr1:9637241-9637055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
230-416
               

               
Cow position:
               
chr1:75411625-75411813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:150712-150900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:1380212-1380022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:3679316-3679493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:20537413-20537230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:21508607-21508418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:31801709-31801895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
127, 61
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:32217449-32217267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:68897057-68897246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:92188170-92187982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 131
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:96304763-96304944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
230-417
               

               
Cow position:
               
chr1:101883180-101883369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
230-420
               

               
Cow position:
               
chr1:63212048-63212238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
230-424
               

               
Cow position:
               
chr1:30035435-30035241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
81, 132
               

               
Conread position:
               
230-424
               

               
Cow position:
               
chr1:82336882-82336695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
230-427
               

               
Cow position:
               
chr1:46354229-46354424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
230-427
               

               
Cow position:
               
chr1:47966809-47967009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
230-427
               

               
Cow position:
               
chr1:84595102-84594902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
230-427
               

               
Cow position:
               
chr1:102730546-102730748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
230-430
               

               
Cow position:
               
chr1:1347423-1347624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
230-430
               

               
Cow position:
               
chr1:25021867-25022064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
230-440
               

               
Cow position:
               
chr1:66752422-66752628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
181, 14
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr1:4294555-4294344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr1:76735268-76735478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr1:100573417-100573627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
189, 78
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:4582761-4582550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:15334099-15333894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:21787535-21787335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
189, 49
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:22824120-22823904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:27959336-27959551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:49334181-49334393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:52496979-52496771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:70435197-70434998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:72068623-72068836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:72422195-72422409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:85688396-85688177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:92580970-92580757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 118
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:94226333-94226555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr1:95835584-95835799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
230-443
               

               
Cow position:
               
chr1:3923593-3923802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
189, 74
               

               
Conread position:
               
230-443
               

               
Cow position:
               
chr1:95153085-95152869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
230-444
               

               
Cow position:
               
chr1:72092412-72092626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 103
               

               
Conread position:
               
230-445
               

               
Cow position:
               
chr1:54569912-54569692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
230-449
               

               
Cow position:
               
chr1:76739703-76739918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
189, 55
               

               
Conread position:
               
230-453
               

               
Cow position:
               
chr1:89158497-89158708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
230-461
               

               
Cow position:
               
chr1:84103847-84104084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
230-475
               

               
Cow position:
               
chr1:98912219-98911974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 174
               

               
Conread position:
               
230-489
               

               
Cow position:
               
chr1:22827356-22827101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
162, 26
               

               
Conread position:
               
230-490
               

               
Cow position:
               
chr1:38419238-38418973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
230-490
               

               
Cow position:
               
chr1:72105611-72105357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
186, 38
               

               
Conread position:
               
230-491
               

               
Cow position:
               
chr1:92197665-92197397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
230-492
               

               
Cow position:
               
chr1:3942005-3942267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
230-493
               

               
Cow position:
               
chr1:53370295-53370024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:628179-627903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:6287361-6287089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:10633251-10632990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
189, 40
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:10941887-10942156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
189, 78
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:10964499-10964230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:15206671-15206927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:18936626-18936893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 69
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:22526085-22525817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
177, 87
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:28563350-28563631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
74, 177
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:30862202-30862470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 20
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:45555576-45555306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
189, 44
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:48443979-48444252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:51609589-51609315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:54267727-54267992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:55428742-55429017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:59519122-59518860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
168, 82
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:61012517-61012251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
186, 81
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:63434587-63434864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:64302039-64302306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:69265038-69264752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:69694796-69695050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
196, 38
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:72304191-72304435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
189, 33
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:73960898-73960647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:75745071-75744802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 33
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:77620760-77620486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 129
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:78092251-78091977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:78794025-78794283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
189, 84
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:83659064-83659339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 129
               

               
Conread position:
               
230-494
               

               
Cow position:
               
chr1:87072905-87072637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 64
               

               
Conread position:
               
231-338
               

               
Cow position:
               
chr1:52429350-52429460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
231-350
               

               
Cow position:
               
chr1:45262507-45262626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-351
               

               
Cow position:
               
chr1:83066621-83066740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 86
               

               
Conread position:
               
231-366
               

               
Cow position:
               
chr1:14067233-14067370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 77
               

               
Conread position:
               
231-376
               

               
Cow position:
               
chr1:2935375-2935222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
231-378
               

               
Cow position:
               
chr1:95966265-95966416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
231-380
               

               
Cow position:
               
chr1:44814453-44814608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
231-390
               

               
Cow position:
               
chr1:83093071-83092916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
231-399
               

               
Cow position:
               
chr1:71664684-71664854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
231-399
               

               
Cow position:
               
chr1:93235729-93235887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
231-406
               

               
Cow position:
               
chr1:41022626-41022455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
231-406
               

               
Cow position:
               
chr1:84787470-84787306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr1:61247577-61247399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr1:90820270-90820442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
231-414
               

               
Cow position:
               
chr1:5872565-5872751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
231-414
               

               
Cow position:
               
chr1:23968855-23969029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
231-414
               

               
Cow position:
               
chr1:46716106-46716286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
231-416
               

               
Cow position:
               
chr1:73534432-73534615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
231-417
               

               
Cow position:
               
chr1:64458182-64457990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
231-417
               

               
Cow position:
               
chr1:69378388-69378574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
231-417
               

               
Cow position:
               
chr1:98556908-98557096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
231-426
               

               
Cow position:
               
chr1:23101885-23101691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
231-430
               

               
Cow position:
               
chr1:3815471-3815672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
231-440
               

               
Cow position:
               
chr1:73721574-73721361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 107
               

               
Conread position:
               
231-440
               

               
Cow position:
               
chr1:97611463-97611659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:11172578-11172374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
185, 87
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:41027282-41027074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 89
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:45576130-45575932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
188, 46
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:65318787-65318574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:68688789-68688582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
188, 73
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:97144261-97144465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
156, 70
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr1:102648490-102648277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
231-447
               

               
Cow position:
               
chr1:99609577-99609365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
231-468
               

               
Cow position:
               
chr1:21955162-21955407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 107
               

               
Conread position:
               
231-474
               

               
Cow position:
               
chr1:82538137-82537896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
231-488
               

               
Cow position:
               
chr1:92590383-92590142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
212, 59
               

               
Conread position:
               
231-490
               

               
Cow position:
               
chr1:484253-484520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
75, 133
               

               
Conread position:
               
231-490
               

               
Cow position:
               
chr1:34771289-34771559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
231-490
               

               
Cow position:
               
chr1:54206609-54206873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
188, 75
               

               
Conread position:
               
231-491
               

               
Cow position:
               
chr1:15547675-15547416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
188, 86
               

               
Conread position:
               
231-492
               

               
Cow position:
               
chr1:37695693-37695966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:8828-8558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:3324084-3323807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
78, 112
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:6304667-6304921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
188, 74
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:7306178-7305918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:10778764-10778508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:24132853-24133117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 83
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:33330891-33331146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:37321800-37322060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:49824856-49825128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
188, 12
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:53521115-53520854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:62235246-62235506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:71253324-71253611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
61, 190
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:78066333-78066597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
188, 83
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:78811248-78810979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 88
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:80584638-80584372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 86
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:91023258-91023526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 39
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:99642159-99642424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
188, 92
               

               
Conread position:
               
231-494
               

               
Cow position:
               
chr1:101159137-101158857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 168
               

               
Conread position:
               
231-496
               

               
Cow position:
               
chr1:85162318-85162610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
61, 147
               

               
Conread position:
               
232-313
               

               
Cow position:
               
chr1:102611731-102611650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
82
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-348
               

               
Cow position:
               
chr1:20551102-20550983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
232-365
               

               
Cow position:
               
chr1:99221425-99221556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
232-372
               

               
Cow position:
               
chr1:43340424-43340564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-393
               

               
Cow position:
               
chr1:100727583-100727738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
232-399
               

               
Cow position:
               
chr1:709694-709857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
232-399
               

               
Cow position:
               
chr1:25956105-25955938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-399
               

               
Cow position:
               
chr1:44321388-44321555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 100
               

               
Conread position:
               
232-411
               

               
Cow position:
               
chr1:4573933-4573754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
232-413
               

               
Cow position:
               
chr1:56749023-56748841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chr1:98742225-98742050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
232-415
               

               
Cow position:
               
chr1:3757436-3757621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
232-415
               

               
Cow position:
               
chr1:43296503-43296692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
232-417
               

               
Cow position:
               
chr1:102523431-102523616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
232-425
               

               
Cow position:
               
chr1:86383585-86383787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 197
               

               
Conread position:
               
232-435
               

               
Cow position:
               
chr1:102754059-102753865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
199, 17
               

               
Conread position:
               
232-440
               

               
Cow position:
               
chr1:32014401-32014199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chr1:81391131-81390921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 116
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chr1:95156756-95156965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
184, 91
               

               
Conread position:
               
232-455
               

               
Cow position:
               
chr1:67654116-67654333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
187, 35
               

               
Conread position:
               
232-472
               

               
Cow position:
               
chr1:45019600-45019835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
232-490
               

               
Cow position:
               
chr1:53623165-53622905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
232-490
               

               
Cow position:
               
chr1:79630710-79630969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
232-490
               

               
Cow position:
               
chr1:93499828-93499569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
176, 82
               

               
Conread position:
               
232-490
               

               
Cow position:
               
chr1:101822295-101822556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
232-492
               

               
Cow position:
               
chr1:61885121-61884856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 91
               

               
Conread position:
               
232-492
               

               
Cow position:
               
chr1:62519575-62519302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
232-492
               

               
Cow position:
               
chr1:82936396-82936648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
187, 29
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:1980901-1981173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:5597003-5597268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
152, 74
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:23998715-23998985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:24777775-24778044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 148
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:35671745-35671484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 86
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:53452730-53452486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
187, 38
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:57575555-57575817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 88
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:61005348-61005614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 160
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:61391587-61391847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
163, 18
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:68618731-68618991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
179, 36
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:70829106-70828841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:78857117-78857380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 215
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:86056869-86057125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:86110536-86110789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:86682359-86682620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
184, 15
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:88913529-88913260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 155
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:89509722-89509981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
187, 17
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr1:95558248-95557978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
232-495
               

               
Cow position:
               
chr1:70175332-70175601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
149, 79
               

               
Conread position:
               
232-496
               

               
Cow position:
               
chr1:41137939-41138192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 81
               

               
Conread position:
               
233-337
               

               
Cow position:
               
chr1:92782690-92782794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
233-345
               

               
Cow position:
               
chr1:26447954-26447843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
233-345
               

               
Cow position:
               
chr1:87988985-87989094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
233-370
               

               
Cow position:
               
chr1:100399994-100400135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 114
               

               
Conread position:
               
233-382
               

               
Cow position:
               
chr1:20202508-20202363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
233-388
               

               
Cow position:
               
chr1:69911320-69911157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
233-389
               

               
Cow position:
               
chr1:80423524-80423679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
233-391
               

               
Cow position:
               
chr1:31846204-31846048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
233-393
               

               
Cow position:
               
chr1:81615858-81615703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
233-398
               

               
Cow position:
               
chr1:102424003-102423837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
233-399
               

               
Cow position:
               
chr1:3130340-3130506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
83, 48
               

               
Conread position:
               
233-413
               

               
Cow position:
               
chr1:71295096-71295263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
233-417
               

               
Cow position:
               
chr1:32035506-32035685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
233-417
               

               
Cow position:
               
chr1:55296959-55297146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
233-417
               

               
Cow position:
               
chr1:62469266-62469086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
233-417
               

               
Cow position:
               
chr1:81638745-81638573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
233-423
               

               
Cow position:
               
chr1:70044552-70044374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
233-424
               

               
Cow position:
               
chr1:30189365-30189170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
68, 179
               

               
Conread position:
               
233-431
               

               
Cow position:
               
chr1:55685770-55685968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr1:45315423-45315637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr1:54478524-54478328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
186, 84
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr1:55753011-55753216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
193, 81
               

               
Conread position:
               
233-442
               

               
Cow position:
               
chr1:74955824-74956018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
233-455
               

               
Cow position:
               
chr1:101280530-101280746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
233-461
               

               
Cow position:
               
chr1:4444631-4444861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
233-469
               

               
Cow position:
               
chr1:100449984-100450207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
186, 37
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr1:81477655-81477928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
75, 245
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr1:84811733-84811999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 72
               

               
Conread position:
               
233-493
               

               
Cow position:
               
chr1:33998957-33998699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
167, 89
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:14379342-14379593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
93, 79
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:19515409-19515673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:20950925-20950663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
76, 130
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:26178600-26178871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 77
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:52467493-52467243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:68763476-68763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 205
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:68826716-68826963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
158, 40
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:74083980-74084253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:83072648-83072379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
186, 13
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:101507558-101507299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
186, 58
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr1:101632143-101632397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
234-389
               

               
Cow position:
               
chr1:31274780-31274937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
234-397
               

               
Cow position:
               
chr1:43379154-43379317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
123, 127
               

               
Conread position:
               
234-399
               

               
Cow position:
               
chr1:23180313-23180137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
234-399
               

               
Cow position:
               
chr1:86579180-86579005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
234-406
               

               
Cow position:
               
chr1:7453121-7452945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chr1:852380-852205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
234-408
               

               
Cow position:
               
chr1:3666826-3666997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
234-414
               

               
Cow position:
               
chr1:81364470-81364288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
234-414
               

               
Cow position:
               
chr1:81473365-81473183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
234-415
               

               
Cow position:
               
chr1:22828366-22828543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
107, 80
               

               
Conread position:
               
234-416
               

               
Cow position:
               
chr1:52450969-52450797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr1:26895605-26895786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr1:29329753-29329566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr1:84782541-84782726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr1:92524223-92524039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
234-418
               

               
Cow position:
               
chr1:69442308-69442492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
234-424
               

               
Cow position:
               
chr1:87149609-87149798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
175, 67
               

               
Conread position:
               
234-426
               

               
Cow position:
               
chr1:42775113-42774926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
96, 42
               

               
Conread position:
               
234-438
               

               
Cow position:
               
chr1:22192977-22192772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
234-441
               

               
Cow position:
               
chr1:34160035-34159835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr1:242759-242556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
185, 78
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr1:17056197-17055993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr1:52435482-52435271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr1:54558124-54558334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 112
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr1:56477792-56477591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
185, 80
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr1:66898288-66898499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
234-451
               

               
Cow position:
               
chr1:102768382-102768172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
234-463
               

               
Cow position:
               
chr1:73020455-73020687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
234-469
               

               
Cow position:
               
chr1:23186595-23186829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
234-476
               

               
Cow position:
               
chr1:85772211-85771968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
234-490
               

               
Cow position:
               
chr1:33720311-33720064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
76, 129
               

               
Conread position:
               
234-490
               

               
Cow position:
               
chr1:100324547-100324798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
234-492
               

               
Cow position:
               
chr1:22729261-22728995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
234-492
               

               
Cow position:
               
chr1:65103836-65103561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:196799-197066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
185, 87
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:25383876-25383605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:41056886-41056618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:43352446-43352716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
73, 187
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:44507175-44506910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:46031168-46030901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:47790461-47790724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:50432274-50432546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:69539892-69539639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
185, 86
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:96964526-96964262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 91
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:101835022-101834763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
234-496
               

               
Cow position:
               
chr1:36998389-36998131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 43
               

               
Conread position:
               
235-352
               

               
Cow position:
               
chr1:51292348-51292235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               
235-355UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr1:36306884-36306762 (view  custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               
235-374UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:45233189-45233059 (view  custom track)

               
               
               
Alignm length:
140

               
               
               
Alignm identity:
109

               
               
               
Alignm E-value:
5e-21

               
               
               
Alignm gaps (pig, cow):
66, 0
235-378UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:64706107-64705963 (view  custom track)

               
               
               
Alignm length:
147

               
               
               
Alignm identity:
115

               
               
               
Alignm E-value:
2e-25

               
               
               
Alignm gaps (pig, cow):
67, 12

               
               
               Conread position:235-381
               
               
               Cow position:chr1:6787936-6788084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 118

               
               
               Conread position:235-381
               
               
               Cow position:chr1:33080605-33080751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:235-381
               
               
               Cow position:chr1:70476547-70476690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:235-382
               
               
               Cow position:chr1:3535275-3535130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:235-382
               
               
               Cow position:chr1:83246634-83246485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:235-385
               
               
               Cow position:chr1:50854119-50853965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:235-389
               
               
               Cow position:chr1:90192626-90192469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-390
               
               
               Cow position:chr1:99031770-99031927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:235-391
               
               
               Cow position:chr1:89146666-89146824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:235-392
               
               
               Cow position:chr1:56719546-56719390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-393
               
               
               Cow position:chr1:42592079-42592237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:235-397
               
               
               Cow position:chr1:52509558-52509720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:235-398
               
               
               Cow position:chr1:69411489-69411653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:235-406
               
               
               Cow position:chr1:22628450-22628614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:235-407
               
               
               Cow position:chr1:731764-731938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:235-407
               
               
               Cow position:chr1:46795962-46795793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:235-410
               
               
               Cow position:chr1:79684227-79684404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:235-411
               
               
               Cow position:chr1:74751422-74751600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr1:51446088-51445914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:235-414
               
               
               Cow position:chr1:85622738-85622557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:235-414
               
               
               Cow position:chr1:98380089-98380269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:235-417
               
               
               Cow position:chr1:74919769-74919954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:235-417
               
               
               Cow position:chr1:95101157-95100979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr1:96518908-96518718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 134

               
               
               Conread position:235-426
               
               
               Cow position:chr1:89835916-89835732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 86

               
               
               Conread position:235-427
               
               
               Cow position:chr1:42353350-42353178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:235-430
               
               
               Cow position:chr1:76740466-76740663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:235-431
               
               
               Cow position:chr1:525012-524818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:235-438
               
               
               Cow position:chr1:7229479-7229679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-441
               
               
               Cow position:chr1:71665728-71665932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:235-442
               
               
               Cow position:chr1:12222398-12222608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-442
               
               
               Cow position:chr1:31794802-31795006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:235-442
               
               
               Cow position:chr1:31819309-31819110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:235-442
               
               
               Cow position:chr1:63992128-63992337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:235-442
               
               
               Cow position:chr1:64803891-64804103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:235-442
               
               
               Cow position:chr1:90267930-90267720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:235-442
               
               
               Cow position:chr1:99604986-99605188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-444
               
               
               Cow position:chr1:20871350-20871562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-456
               
               
               Cow position:chr1:5010627-5010857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-461
               
               
               Cow position:chr1:93590384-93590607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-472
               
               
               Cow position:chr1:1496321-1496568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 130

               
               
               Conread position:235-482
               
               
               Cow position:chr1:5284020-5284268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:235-484
               
               
               Cow position:chr1:7971610-7971367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):184, 53

               
               
               Conread position:235-490
               
               
               Cow position:chr1:3966035-3965785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:235-492
               
               
               Cow position:chr1:42887074-42887323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 79

               
               
               Conread position:235-492
               
               
               Cow position:chr1:52912686-52912954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:235-492
               
               
               Cow position:chr1:54156528-54156790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:235-492
               
               
               Cow position:chr1:73545702-73545964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:235-492
               
               
               Cow position:chr1:81290710-81290447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):184, 58

               
               
               Conread position:235-493
               
               
               Cow position:chr1:5423527-5423795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:235-493
               
               
               Cow position:chr1:68817595-68817856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):177, 26

               
               
               Conread position:235-494
               
               
               Cow position:chr1:21561226-21560957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:235-494
               
               
               Cow position:chr1:51394624-51394357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):181, 100

               
               
               Conread position:235-494
               
               
               Cow position:chr1:52139422-52139691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:235-494
               
               
               Cow position:chr1:53374633-53374373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr1:64572720-64572455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:235-494
               
               
               Cow position:chr1:70094544-70094284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr1:72011616-72011867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):184, 80

               
               
               Conread position:235-494
               
               
               Cow position:chr1:73457889-73458152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:235-494
               
               
               Cow position:chr1:74929502-74929775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr1:87888596-87888342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 98

               
               
               Conread position:235-494
               
               
               Cow position:chr1:88360091-88359822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr1:89076417-89076687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:235-494
               
               
               Cow position:chr1:102756230-102756487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:235-496
               
               
               Cow position:chr1:55705041-55705310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:236-438
               
               
               Cow position:chr1:30949187-30948995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:236-490
               
               
               Cow position:chr1:54258774-54258508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:237-401
               
               
               Cow position:chr1:40724796-40724637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:237-417
               
               
               Cow position:chr1:20125999-20125817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:237-493
               
               
               Cow position:chr1:58754594-58754853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):182, 53

               
               
               Conread position:238-406
               
               
               Cow position:chr1:92363467-92363627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr1:1802373-1802192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:238-424
               
               
               Cow position:chr1:95049662-95049847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:238-439
               
               
               Cow position:chr1:31272252-31272440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:238-442
               
               
               Cow position:chr1:759209-759419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr1:43872106-43872320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 159

               
               
               Conread position:238-442
               
               
               Cow position:chr1:63079204-63079009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):181, 30

               
               
               Conread position:238-442
               
               
               Cow position:chr1:101439286-101439483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):147, 32

               
               
               Conread position:238-450
               
               
               Cow position:chr1:83606253-83606457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:238-494
               
               
               Cow position:chr1:45670845-45670578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 171

               
               
               Conread position:238-494
               
               
               Cow position:chr1:55357086-55357343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 175

               
               
               Conread position:238-494
               
               
               Cow position:chr1:82337577-82337839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:238-494
               
               
               Cow position:chr1:89449101-89448839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 56

               
               
               Conread position:239-411
               
               
               Cow position:chr1:69691509-69691684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:239-442
               
               
               Cow position:chr1:72813820-72813615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:239-490
               
               
               Cow position:chr1:34856422-34856685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:239-492
               
               
               Cow position:chr1:24581769-24581525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:239-494
               
               
               Cow position:chr1:31348236-31348498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:239-494
               
               
               Cow position:chr1:93528896-93528640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 14

               
               
               Conread position:240-385
               
               
               Cow position:chr1:50906480-50906623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-385
               
               
               Cow position:chr1:57395304-57395450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-385
               
               
               Cow position:chr1:80870582-80870435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:240-389
               
               
               Cow position:chr1:1489204-1489354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:240-389
               
               
               Cow position:chr1:5479457-5479607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:240-389
               
               
               Cow position:chr1:11107448-11107297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-389
               
               
               Cow position:chr1:95976534-95976386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:240-392
               
               
               Cow position:chr1:63994354-63994505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 68

               
               
               Conread position:240-397
               
               
               Cow position:chr1:100513098-100512940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:240-398
               
               
               Cow position:chr1:3034007-3034155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr1:10470623-10470469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr1:19384256-19384413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 74

               
               
               Conread position:240-399
               
               
               Cow position:chr1:51968728-51968580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr1:55110703-55110535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr1:7966048-7965883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr1:51860363-51860526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:240-411
               
               
               Cow position:chr1:102797798-102797967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:240-414
               
               
               Cow position:chr1:4361851-4362029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:240-414
               
               
               Cow position:chr1:31340566-31340743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:240-414
               
               
               Cow position:chr1:69678122-69678291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 148

               
               
               Conread position:240-417
               
               
               Cow position:chr1:34001244-34001072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:240-417
               
               
               Cow position:chr1:60403970-60403791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:240-417
               
               
               Cow position:chr1:68710485-68710303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr1:96201114-96201291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:240-417
               
               
               Cow position:chr1:97321844-97322026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 157

               
               
               Conread position:240-417
               
               
               Cow position:chr1:98897489-98897669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:240-420
               
               
               Cow position:chr1:98605503-98605682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):139, 93

               
               
               Conread position:240-422
               
               
               Cow position:chr1:78784700-78784884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:240-423
               
               
               Cow position:chr1:97986243-97986431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:240-424
               
               
               Cow position:chr1:77685777-77685964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-424
               
               
               Cow position:chr1:78029825-78030012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 178

               
               
               Conread position:240-430
               
               
               Cow position:chr1:58420399-58420214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 83

               
               
               Conread position:240-430
               
               
               Cow position:chr1:76612931-76613124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr1:71945879-71946074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:240-432
               
               
               Cow position:chr1:76474358-76474549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:240-440
               
               
               Cow position:chr1:95618842-95618643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-442
               
               
               Cow position:chr1:6381977-6381771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):76, 126

               
               
               Conread position:240-442
               
               
               Cow position:chr1:36080028-36079823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr1:36688179-36688379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:240-442
               
               
               Cow position:chr1:57089478-57089680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:240-442
               
               
               Cow position:chr1:75383164-75382980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr1:81515440-81515232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:240-442
               
               
               Cow position:chr1:100474440-100474233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-444
               
               
               Cow position:chr1:5751516-5751310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:240-444
               
               
               Cow position:chr1:16766885-16767087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:240-444
               
               
               Cow position:chr1:38754118-38753920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 77

               
               
               Conread position:240-444
               
               
               Cow position:chr1:81858700-81858905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:240-446
               
               
               Cow position:chr1:24542369-24542575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 84

               
               
               Conread position:240-454
               
               
               Cow position:chr1:21681333-21681551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-472
               
               
               Cow position:chr1:70227490-70227726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:240-474
               
               
               Cow position:chr1:13157395-13157148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:240-475
               
               
               Cow position:chr1:79719009-79718769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:240-482
               
               
               Cow position:chr1:97833898-97833663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:240-486
               
               
               Cow position:chr1:62964469-62964225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:240-490
               
               
               Cow position:chr1:71350523-71350781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-492
               
               
               Cow position:chr1:52661975-52662231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:240-492
               
               
               Cow position:chr1:64678881-64678639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:240-492
               
               
               Cow position:chr1:85029137-85028896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 56

               
               
               Conread position:240-492
               
               
               Cow position:chr1:101634900-101634646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:240-493
               
               
               Cow position:chr1:26934067-26934324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 197

               
               
               Conread position:240-494
               
               
               Cow position:chr1:6590238-6589982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):72, 208

               
               
               Conread position:240-494
               
               
               Cow position:chr1:7443183-7442925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:240-494
               
               
               Cow position:chr1:12464464-12464724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr1:23488302-23488565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:240-494
               
               
               Cow position:chr1:41182037-41181787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr1:42175929-42175666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 234

               
               
               Conread position:240-494
               
               
               Cow position:chr1:48206339-48206594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr1:56225667-56225408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:240-494
               
               
               Cow position:chr1:61564982-61564738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 134

               
               
               Conread position:240-494
               
               
               Cow position:chr1:61741763-61742028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:240-494
               
               
               Cow position:chr1:61846359-61846087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:240-494
               
               
               Cow position:chr1:75250313-75250053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:240-494
               
               
               Cow position:chr1:81568828-81569089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr1:82513151-82513414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:240-494
               
               
               Cow position:chr1:87198029-87197757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr1:90621305-90621566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):144, 51

               
               
               Conread position:240-494
               
               
               Cow position:chr1:97303052-97303303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr1:98583949-98583699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr1:100852903-100852660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):175, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr1:102305946-102306201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:240-495
               
               
               Cow position:chr1:91861096-91861348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 206

               
               
               Conread position:240-495
               
               
               Cow position:chr1:101714317-101714054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):207, 78

               
               
               Conread position:240-496
               
               
               Cow position:chr1:27463329-27463070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):195, 41

               
               
               Conread position:241-395
               
               
               Cow position:chr1:71228295-71228139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:241-398
               
               
               Cow position:chr1:60045187-60045029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:241-407
               
               
               Cow position:chr1:80385286-80385452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:241-410
               
               
               Cow position:chr1:48447670-48447496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:241-412
               
               
               Cow position:chr1:64421736-64421571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:241-414
               
               
               Cow position:chr1:83677125-83677296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:241-417
               
               
               Cow position:chr1:11708824-11708993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr1:49297851-49297676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):67, 84

               
               
               Conread position:241-417
               
               
               Cow position:chr1:83682972-83683146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:241-418
               
               
               Cow position:chr1:64887309-64887485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 170

               
               
               Conread position:241-426
               
               
               Cow position:chr1:85339577-85339402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):175, 63

               
               
               Conread position:241-432
               
               
               Cow position:chr1:71636128-71636316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):59, 75

               
               
               Conread position:241-442
               
               
               Cow position:chr1:17875513-17875708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):175, 82

               
               
               Conread position:241-442
               
               
               Cow position:chr1:67529256-67529054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):74, 58

               
               
               Conread position:241-443
               
               
               Cow position:chr1:73551302-73551512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:241-485
               
               
               Cow position:chr1:33206674-33206925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 184

               
               
               Conread position:241-492
               
               
               Cow position:chr1:79146614-79146878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:241-492
               
               
               Cow position:chr1:79640089-79640347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 76

               
               
               Conread position:241-492
               
               
               Cow position:chr1:100575841-100576098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):185, 77

               
               
               Conread position:241-494
               
               
               Cow position:chr1:21578010-21577751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:241-494
               
               
               Cow position:chr1:102266070-102266328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):159, 73

               
               
               Conread position:242-392
               
               
               Cow position:chr1:96362239-96362376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-404
               
               
               Cow position:chr1:79169954-79170115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:242-417
               
               
               Cow position:chr1:14308830-14309007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:242-417
               
               
               Cow position:chr1:26984211-26984033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:242-417
               
               
               Cow position:chr1:29671021-29671199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:242-418
               
               
               Cow position:chr1:10523898-10523725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:242-444
               
               
               Cow position:chr1:96558647-96558853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:242-494
               
               
               Cow position:chr1:79135478-79135222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):152, 93

               
               
               Conread position:244-411
               
               
               Cow position:chr1:49759741-49759572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:244-413
               
               
               Cow position:chr1:77810566-77810731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):156, 21

               
               
               Conread position:244-440
               
               
               Cow position:chr1:101788900-101789088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:244-494
               
               
               Cow position:chr1:3607992-3607752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:244-494
               
               
               Cow position:chr1:95072540-95072271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 239

               
               
               Conread position:244-494
               
               
               Cow position:chr1:98512134-98511870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:245-382
               
               
               Cow position:chr1:67743542-67743676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:245-417
               
               
               Cow position:chr1:23373057-23372884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:245-442
               
               
               Cow position:chr1:11488962-11489162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:245-494
               
               
               Cow position:chr1:16855505-16855755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:245-494
               
               
               Cow position:chr1:44946944-44946699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 7

               
               
               Conread position:246-429
               
               
               Cow position:chr1:98060254-98060073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:246-442
               
               
               Cow position:chr1:61011370-61011180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):173, 60

               
               
               Conread position:246-494
               
               
               Cow position:chr1:635489-635743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:247-417
               
               
               Cow position:chr1:49082940-49082768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr1:78034711-78034879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:247-422
               
               
               Cow position:chr1:23633733-23633910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:247-425
               
               
               Cow position:chr1:67674414-67674585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:247-430
               
               
               Cow position:chr1:45099950-45099771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):109, 70

               
               
               Conread position:247-430
               
               
               Cow position:chr1:78782180-78781988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 174

               
               
               Conread position:247-442
               
               
               Cow position:chr1:101267808-101268002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:247-488
               
               
               Cow position:chr1:97090511-97090271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):172, 14

               
               
               Conread position:247-493
               
               
               Cow position:chr1:47886286-47886543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):94, 64

               
               
               Conread position:247-494
               
               
               Cow position:chr1:60987186-60986927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-494
               
               
               Cow position:chr1:100762268-100762017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):137, 67

               
               
               Conread position:248-392
               
               
               Cow position:chr1:99629355-99629214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr1:78793810-78793958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:248-413
               
               
               Cow position:chr1:1799225-1799060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:248-417
               
               
               Cow position:chr1:362948-362776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:248-417
               
               
               Cow position:chr1:40181428-40181600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:248-417
               
               
               Cow position:chr1:81668619-81668792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:248-422
               
               
               Cow position:chr1:61134608-61134430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):85, 99

               
               
               Conread position:248-424
               
               
               Cow position:chr1:84815328-84815146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):61, 117

               
               
               Conread position:248-425
               
               
               Cow position:chr1:63905071-63905240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-430
               
               
               Cow position:chr1:6941659-6941483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-430
               
               
               Cow position:chr1:6959072-6958896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr1:62034642-62034829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):171, 37

               
               
               Conread position:248-492
               
               
               Cow position:chr1:64113607-64113851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:248-493
               
               
               Cow position:chr1:11729365-11729124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):6, 51

               
               
               Conread position:248-494
               
               
               Cow position:chr1:31855036-31855294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:248-494
               
               
               Cow position:chr1:45223769-45223521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:248-494
               
               
               Cow position:chr1:77720067-77720293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr1:78810073-78809822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:249-387
               
               
               Cow position:chr1:22394481-22394620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:249-431
               
               
               Cow position:chr1:83024973-83025154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:249-494
               
               
               Cow position:chr1:71078770-71079016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:249-494
               
               
               Cow position:chr1:80311649-80311408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 172

               
               
               Conread position:249-494
               
               
               Cow position:chr1:89381466-89381216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):170, 68

               
               
               Conread position:250-410
               
               
               Cow position:chr1:90879549-90879704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:250-425
               
               
               Cow position:chr1:101525729-101525906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 173

               
               
               Conread position:250-494
               
               
               Cow position:chr1:6228390-6228642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:250-494
               
               
               Cow position:chr1:17196434-17196688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):71, 172

               
               
               Conread position:250-494
               
               
               Cow position:chr1:43388863-43389109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):169, 49

               
               
               Conread position:250-494
               
               
               Cow position:chr1:95499305-95499552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:251-442
               
               
               Cow position:chr1:98031105-98030922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):168, 16

               
               
               Conread position:252-424
               
               
               Cow position:chr1:2975800-2975976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:253-438
               
               
               Cow position:chr1:69940636-69940820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):166, 62

               
               
               Conread position:253-489
               
               
               Cow position:chr1:92032411-92032655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:253-494
               
               
               Cow position:chr1:89157942-89158188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):166, 46

               
               
               Conread position:254-490
               
               
               Cow position:chr1:1499503-1499746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 59

               
               
               Conread position:255-417
               
               
               Cow position:chr1:31630097-31630262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:258-490
               
               
               Cow position:chr1:53398156-53397931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):161, 64

               
               
               Conread position:259-414
               
               
               Cow position:chr1:81471533-81471383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:262-417
               
               
               Cow position:chr1:81179168-81179323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:263-494
               
               
               Cow position:chr1:13637487-13637723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):156, 54

               
               
               Conread position:263-494
               
               
               Cow position:chr1:91811960-91811723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 152

               
               
               Conread position:264-417
               
               
               Cow position:chr1:70146731-70146886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:264-455
               
               
               Cow position:chr1:95057221-95057031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):160, 40

               
               
               Conread position:266-494
               
               
               Cow position:chr1:37124302-37124067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:267-417
               
               
               Cow position:chr1:73494417-73494571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:270-494
               
               
               Cow position:chr1:41047124-41047362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:271-410
               
               
               Cow position:chr1:4512149-4512015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:271-490
               
               
               Cow position:chr1:48581300-48581077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:272-494
               
               
               Cow position:chr1:53458867-53458638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:273-397
               
               
               Cow position:chr1:40160546-40160669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr1:91810912-91810789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:274-406
               
               
               Cow position:chr1:82917307-82917439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr1:42292093-42291951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):124, 118

               
               
               Conread position:277-493
               
               
               Cow position:chr1:27881767-27881555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:278-493
               
               
               Cow position:chr1:52039796-52039575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):141, 41

               
               
               Conread position:281-390
               
               
               Cow position:chr1:100375983-100375874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:281-414
               
               
               Cow position:chr1:62852564-62852699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:281-490
               
               
               Cow position:chr1:19962209-19962009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 36

               
               
               Conread position:283-417
               
               
               Cow position:chr1:52487820-52487955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:283-423
               
               
               Cow position:chr1:67539720-67539580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:286-462
               
               
               Cow position:chr1:32001167-32001341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:288-494
               
               
               Cow position:chr1:74822607-74822391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:289-494
               
               
               Cow position:chr1:93554989-93554780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:291-424
               
               
               Cow position:chr1:81452505-81452371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:292-492
               
               
               Cow position:chr1:89341832-89342051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:293-494
               
               
               Cow position:chr1:36578666-36578470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:293-494
               
               
               Cow position:chr1:37886663-37886868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):150, 118

               
               
               Conread position:293-496
               
               
               Cow position:chr1:93044162-93043959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:296-494
               
               
               Cow position:chr1:24406748-24406952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:297-494
               
               
               Cow position:chr1:80841791-80841594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 148

               
               
               Conread position:298-494
               
               
               Cow position:chr1:80422416-80422222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):145, 109

               
               
               Conread position:299-492
               
               
               Cow position:chr1:62036942-62036745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:302-424
               
               
               Cow position:chr1:46100698-46100823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr1:8670912-8670772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:302-442
               
               
               Cow position:chr1:81580317-81580177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:302-460
               
               
               Cow position:chr1:3882319-3882477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:302-490
               
               
               Cow position:chr1:85549938-85550132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:302-492
               
               
               Cow position:chr1:45553103-45553300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 98

               
               
               Conread position:302-492
               
               
               Cow position:chr1:50992072-50991878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:302-494
               
               
               Cow position:chr1:39509916-39510113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr1:48730693-48730886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr1:53671610-53671799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):152, 116

               
               
               Conread position:302-494
               
               
               Cow position:chr1:68672462-68672658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:302-494
               
               
               Cow position:chr1:81613530-81613331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr1:98551859-98551658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:303-492
               
               
               Cow position:chr1:7023260-7023062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr1:47233339-47233537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr1:98576186-98575987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:304-442
               
               
               Cow position:chr1:71915984-71916120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:305-442
               
               
               Cow position:chr1:45478728-45478860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr1:83463717-83463534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:306-494
               
               
               Cow position:chr1:84255903-84255705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:306-494
               
               
               Cow position:chr1:91874783-91874967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:308-492
               
               
               Cow position:chr1:84768745-84768936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:310-494
               
               
               Cow position:chr1:67688451-67688637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:311-494
               
               
               Cow position:chr1:4027994-4027809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:315-492
               
               
               Cow position:chr1:5135582-5135760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 154

               
               
               Conread position:315-494
               
               
               Cow position:chr1:4581204-4581391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:315-494
               
               
               Cow position:chr1:83582806-83582994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:316-466
               
               
               Cow position:chr1:42537196-42537351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:319-430
               
               
               Cow position:chr1:84288526-84288414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:325-494
               
               
               Cow position:chr1:48769919-48769745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:327-442
               
               
               Cow position:chr1:37309404-37309520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:327-494
               
               
               Cow position:chr1:95215075-95215239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:329-494
               
               
               Cow position:chr1:38401912-38401736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:329-494
               
               
               Cow position:chr1:80900232-80900059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:331-494
               
               
               Cow position:chr1:12978793-12978622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 149

               
               
               Conread position:331-494
               
               
               Cow position:chr1:85647671-85647840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:332-494
               
               
               Cow position:chr1:89350075-89349904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:334-494
               
               
               Cow position:chr1:27380564-27380402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:204-494
               
               
               Cow position:chr10:61588046-61588350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:206-494
               
               
               Cow position:chr10:64227594-64227313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):112, 142

               
               
               Conread position:207-442
               
               
               Cow position:chr10:20485354-20485590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:211-494
               
               
               Cow position:chr10:2449553-2449259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:212-439
               
               
               Cow position:chr10:38386031-38386266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:214-397
               
               
               Cow position:chr10:23478743-23478914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:214-489
               
               
               Cow position:chr10:30369630-30369909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:214-494
               
               
               Cow position:chr10:2201938-2202212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):176, 50

               
               
               Conread position:214-494
               
               
               Cow position:chr10:29328205-29328476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):205, 14

               
               
               Conread position:217-431
               
               
               Cow position:chr10:10829235-10829023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:218-397
               
               
               Cow position:chr10:18849716-18849538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):139, 97

               
               
               Conread position:218-494
               
               
               Cow position:chr10:8449714-8449411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:218-494
               
               
               Cow position:chr10:55395786-55396066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 85

               
               
               Conread position:218-494
               
               
               Cow position:chr10:65071513-65071224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:219-493
               
               
               Cow position:chr10:19895586-19895310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 80

               
               
               Conread position:220-379
               
               
               Cow position:chr10:60250880-60251041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:220-385
               
               
               Cow position:chr10:30360800-30360642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:220-425
               
               
               Cow position:chr10:19394375-19394581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 185

               
               
               Conread position:220-494
               
               
               Cow position:chr10:31400707-31400983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:220-494
               
               
               Cow position:chr10:59009949-59010225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):199, 21

               
               
               Conread position:222-389
               
               
               Cow position:chr10:13350014-13350186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:222-390
               
               
               Cow position:chr10:17065834-17065669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:222-399
               
               
               Cow position:chr10:60962623-60962432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:222-492
               
               
               Cow position:chr10:39124324-39124041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 251

               
               
               Conread position:222-493
               
               
               Cow position:chr10:67442934-67443193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:222-494
               
               
               Cow position:chr10:13918085-13918341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):190, 24

               
               
               Conread position:222-494
               
               
               Cow position:chr10:30353037-30352759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:222-494
               
               
               Cow position:chr10:59572086-59571813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:222-496
               
               
               Cow position:chr10:19191943-19191671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:223-354
               
               
               Cow position:chr10:30923111-30923236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:223-385
               
               
               Cow position:chr10:5108664-5108828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:223-399
               
               
               Cow position:chr10:4329807-4329984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:223-404
               
               
               Cow position:chr10:29713338-29713153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):99, 173

               
               
               Conread position:223-406
               
               
               Cow position:chr10:23341082-23340901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:223-406
               
               
               Cow position:chr10:46494140-46494328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:223-417
               
               
               Cow position:chr10:19403100-19402905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:223-417
               
               
               Cow position:chr10:55123000-55122802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:223-440
               
               
               Cow position:chr10:10634400-10634190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):193, 38

               
               
               Conread position:223-440
               
               
               Cow position:chr10:44771835-44771621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):196, 97

               
               
               Conread position:223-443
               
               
               Cow position:chr10:37014824-37014602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:223-494
               
               
               Cow position:chr10:3276156-3275901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:223-494
               
               
               Cow position:chr10:32834999-32834731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):196, 55

               
               
               Conread position:223-494
               
               
               Cow position:chr10:46934587-46934873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:224-313
               
               
               Cow position:chr10:28776581-28776493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:224-339
               
               
               Cow position:chr10:38156521-38156633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:224-442
               
               
               Cow position:chr10:13586890-13586673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:224-442
               
               
               Cow position:chr10:35981779-35981559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 101

               
               
               Conread position:224-457
               
               
               Cow position:chr10:2745813-2745593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):226, 73

               
               
               Conread position:224-491
               
               
               Cow position:chr10:23055906-23056164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):195, 39

               
               
               Conread position:224-494
               
               
               Cow position:chr10:42313095-42312815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:225-336
               
               
               Cow position:chr10:59252724-59252837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:225-381
               
               
               Cow position:chr10:31000053-31000199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:225-399
               
               
               Cow position:chr10:14668584-14668411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:225-403
               
               
               Cow position:chr10:17567919-17568092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:225-406
               
               
               Cow position:chr10:38195786-38195970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:225-407
               
               
               Cow position:chr10:64139902-64140092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:225-411
               
               
               Cow position:chr10:32649064-32649242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:225-414
               
               
               Cow position:chr10:40147444-40147635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:225-431
               
               
               Cow position:chr10:69840533-69840333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:225-434
               
               
               Cow position:chr10:40999043-40998833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:225-457
               
               
               Cow position:chr10:65681522-65681759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 138

               
               
               Conread position:225-489
               
               
               Cow position:chr10:5465616-5465890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:225-494
               
               
               Cow position:chr10:4184389-4184104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:225-494
               
               
               Cow position:chr10:24753323-24753061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:225-494
               
               
               Cow position:chr10:58043941-58044219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 122

               
               
               Conread position:225-496
               
               
               Cow position:chr10:11966659-11966935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:225-496
               
               
               Cow position:chr10:47773905-47773639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):195, 16

               
               
               Conread position:226-382
               
               
               Cow position:chr10:47785101-47785254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:226-397
               
               
               Cow position:chr10:38800031-38799853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:226-399
               
               
               Cow position:chr10:55874856-55874690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:226-410
               
               
               Cow position:chr10:49909908-49910090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 157

               
               
               Conread position:226-417
               
               
               Cow position:chr10:24830887-24831088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:226-490
               
               
               Cow position:chr10:54504788-54504520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):193, 107

               
               
               Conread position:226-493
               
               
               Cow position:chr10:29166465-29166196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 179

               
               
               Conread position:227-320
               
               
               Cow position:chr10:3362834-3362739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-345
               
               
               Cow position:chr10:1072907-1073026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-347
               
               
               Cow position:chr10:52364981-52364858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:227-364
               
               
               Cow position:chr10:17984068-17983929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-376
               
               
               Cow position:chr10:38133148-38132993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr10:28721962-28721809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:227-382
               
               
               Cow position:chr10:847044-847205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-383
               
               
               Cow position:chr10:24862915-24863078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr10:27258941-27259108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:227-391
               
               
               Cow position:chr10:59203794-59203630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:227-396
               
               
               Cow position:chr10:32799076-32799242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:227-397
               
               
               Cow position:chr10:16417423-16417583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:227-399
               
               
               Cow position:chr10:49029831-49029665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr10:55270832-55271012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:227-403
               
               
               Cow position:chr10:32829418-32829239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr10:35108749-35108584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-409
               
               
               Cow position:chr10:48347888-48347709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:227-411
               
               
               Cow position:chr10:8871000-8870816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:227-411
               
               
               Cow position:chr10:16641746-16641930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 87

               
               
               Conread position:227-414
               
               
               Cow position:chr10:3986074-3985888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr10:5608138-5607949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:227-414
               
               
               Cow position:chr10:15601994-15602183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr10:58807565-58807746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr10:2328375-2328184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 59

               
               
               Conread position:227-417
               
               
               Cow position:chr10:10048862-10048667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:227-417
               
               
               Cow position:chr10:16598875-16598684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-417
               
               
               Cow position:chr10:25968350-25968163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr10:47159389-47159210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:227-417
               
               
               Cow position:chr10:53945191-53944999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr10:62220024-62219828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:227-420
               
               
               Cow position:chr10:2984878-2985082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:227-425
               
               
               Cow position:chr10:14188424-14188624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:227-432
               
               
               Cow position:chr10:6555636-6555823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-432
               
               
               Cow position:chr10:17077562-17077758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):192, 17

               
               
               Conread position:227-437
               
               
               Cow position:chr10:65904424-65904219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):208, 25

               
               
               Conread position:227-438
               
               
               Cow position:chr10:34705463-34705250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:227-440
               
               
               Cow position:chr10:17150054-17149851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-442
               
               
               Cow position:chr10:704803-705026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr10:5889575-5889793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:227-442
               
               
               Cow position:chr10:14093066-14093273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):192, 37

               
               
               Conread position:227-442
               
               
               Cow position:chr10:22980796-22981009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):192, 93

               
               
               Conread position:227-442
               
               
               Cow position:chr10:25822070-25822275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):189, 91

               
               
               Conread position:227-442
               
               
               Cow position:chr10:30261428-30261633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr10:31718197-31718414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 104

               
               
               Conread position:227-442
               
               
               Cow position:chr10:47690580-47690357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr10:51306520-51306312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr10:56079977-56080202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 141

               
               
               Conread position:227-443
               
               
               Cow position:chr10:27178670-27178464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):192, 38

               
               
               Conread position:227-444
               
               
               Cow position:chr10:48377211-48377430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 167

               
               
               Conread position:227-457
               
               
               Cow position:chr10:50050082-50049862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:227-480
               
               
               Cow position:chr10:1424016-1423759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:227-480
               
               
               Cow position:chr10:63884129-63883865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):75, 197

               
               
               Conread position:227-485
               
               
               Cow position:chr10:69934599-69934853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:227-490
               
               
               Cow position:chr10:6531982-6532240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):212, 37

               
               
               Conread position:227-490
               
               
               Cow position:chr10:31004831-31005104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):85, 135

               
               
               Conread position:227-490
               
               
               Cow position:chr10:45871702-45871435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 132

               
               
               Conread position:227-490
               
               
               Cow position:chr10:55382501-55382229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:227-491
               
               
               Cow position:chr10:16986519-16986244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-492
               
               
               Cow position:chr10:16414391-16414672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:227-492
               
               
               Cow position:chr10:25813499-25813217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 132

               
               
               Conread position:227-493
               
               
               Cow position:chr10:7366591-7366873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:227-493
               
               
               Cow position:chr10:39387632-39387373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):232, 81

               
               
               Conread position:227-494
               
               
               Cow position:chr10:13311927-13311643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr10:23912328-23912589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:227-494
               
               
               Cow position:chr10:24276548-24276820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):179, 17

               
               
               Conread position:227-494
               
               
               Cow position:chr10:27118781-27119055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):127, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr10:31027457-31027734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 267

               
               
               Conread position:227-494
               
               
               Cow position:chr10:31528151-31527889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr10:31534922-31534642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr10:34654927-34655201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):196, 76

               
               
               Conread position:227-494
               
               
               Cow position:chr10:35792112-35791842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 240

               
               
               Conread position:227-494
               
               
               Cow position:chr10:52881433-52881708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr10:60236916-60237182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):189, 94

               
               
               Conread position:227-494
               
               
               Cow position:chr10:63940955-63940684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 106

               
               
               Conread position:227-494
               
               
               Cow position:chr10:64042268-64041996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):192, 121

               
               
               Conread position:227-494
               
               
               Cow position:chr10:68182775-68183039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:227-496
               
               
               Cow position:chr10:11059941-11059667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:228-338
               
               
               Cow position:chr10:52824990-52825097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:228-354
               
               
               Cow position:chr10:55194573-55194696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:228-374
               
               
               Cow position:chr10:1468086-1467926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:228-417
               
               
               Cow position:chr10:37375562-37375753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:228-417
               
               
               Cow position:chr10:53706808-53706617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 119

               
               
               Conread position:228-430
               
               
               Cow position:chr10:53563935-53564139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:228-442
               
               
               Cow position:chr10:23576723-23576516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):191, 77

               
               
               Conread position:228-442
               
               
               Cow position:chr10:34607749-34607531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:228-446
               
               
               Cow position:chr10:13927906-13927699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):191, 34

               
               
               Conread position:228-468
               
               
               Cow position:chr10:13316143-13315881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:228-468
               
               
               Cow position:chr10:60345739-60345968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):191, 40

               
               
               Conread position:228-483
               
               
               Cow position:chr10:18042365-18042104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:228-490
               
               
               Cow position:chr10:67626818-67627082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):187, 42

               
               
               Conread position:228-492
               
               
               Cow position:chr10:13764983-13765251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:228-494
               
               
               Cow position:chr10:21657594-21657335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:228-494
               
               
               Cow position:chr10:45476036-45476302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:228-494
               
               
               Cow position:chr10:56180767-56180477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):69, 212

               
               
               Conread position:228-494
               
               
               Cow position:chr10:59455543-59455288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):210, 13

               
               
               Conread position:228-494
               
               
               Cow position:chr10:68927330-68927065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:229-357
               
               
               Cow position:chr10:56908569-56908703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:229-382
               
               
               Cow position:chr10:32775289-32775143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:229-398
               
               
               Cow position:chr10:62454182-62454355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:229-399
               
               
               Cow position:chr10:7786956-7786783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:229-411
               
               
               Cow position:chr10:48316139-48316307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:229-416
               
               
               Cow position:chr10:24915537-24915722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr10:24312710-24312891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:229-440
               
               
               Cow position:chr10:48257094-48257301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:229-442
               
               
               Cow position:chr10:48316762-48316977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 181

               
               
               Conread position:229-442
               
               
               Cow position:chr10:50042800-50042577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):87, 196

               
               
               Conread position:229-490
               
               
               Cow position:chr10:31803296-31803567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:229-492
               
               
               Cow position:chr10:46151050-46150791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:229-493
               
               
               Cow position:chr10:37415965-37415700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:229-494
               
               
               Cow position:chr10:17837135-17836864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:229-494
               
               
               Cow position:chr10:42230987-42230701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:229-494
               
               
               Cow position:chr10:45728779-45729026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:229-494
               
               
               Cow position:chr10:52695543-52695817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:229-496
               
               
               Cow position:chr10:57786518-57786245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):190, 91

               
               
               Conread position:230-354
               
               
               Cow position:chr10:49686923-49686803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr10:58606534-58606408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 59

               
               
               Conread position:230-365
               
               
               Cow position:chr10:13363695-13363832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-365
               
               
               Cow position:chr10:13364885-13365022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr10:19709659-19709520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:230-379
               
               
               Cow position:chr10:33694549-33694408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-379
               
               
               Cow position:chr10:37534771-37534623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:230-382
               
               
               Cow position:chr10:58557346-58557203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:230-391
               
               
               Cow position:chr10:8891107-8891268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr10:30801502-30801339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:230-398
               
               
               Cow position:chr10:17518664-17518833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):80, 147

               
               
               Conread position:230-399
               
               
               Cow position:chr10:35979113-35978942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-399
               
               
               Cow position:chr10:47430004-47429839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr10:58066007-58066176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:230-405
               
               
               Cow position:chr10:35650571-35650388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:230-406
               
               
               Cow position:chr10:9797731-9797904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:230-407
               
               
               Cow position:chr10:53698591-53698412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:230-408
               
               
               Cow position:chr10:7089521-7089351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-410
               
               
               Cow position:chr10:8161687-8161506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 93

               
               
               Conread position:230-410
               
               
               Cow position:chr10:69937263-69937449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr10:30836851-30837035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr10:50051891-50052075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr10:9959399-9959214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:230-415
               
               
               Cow position:chr10:7309267-7309455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr10:21528973-21528785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:230-415
               
               
               Cow position:chr10:21546347-21546159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:230-415
               
               
               Cow position:chr10:52569776-52569589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr10:4143058-4143245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr10:3286722-3286906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):139, 91

               
               
               Conread position:230-417
               
               
               Cow position:chr10:13368538-13368348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr10:16297169-16297355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr10:19503099-19503288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:230-417
               
               
               Cow position:chr10:43918433-43918246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:230-417
               
               
               Cow position:chr10:48814247-48814432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:230-417
               
               
               Cow position:chr10:56996530-56996712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr10:59424782-59424594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:230-417
               
               
               Cow position:chr10:64877526-64877715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 133

               
               
               Conread position:230-423
               
               
               Cow position:chr10:62919309-62919503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-424
               
               
               Cow position:chr10:22341755-22341566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:230-424
               
               
               Cow position:chr10:58638186-58638001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:230-424
               
               
               Cow position:chr10:58642127-58642323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-431
               
               
               Cow position:chr10:49862644-49862450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):189, 82

               
               
               Conread position:230-431
               
               
               Cow position:chr10:59417057-59417255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-438
               
               
               Cow position:chr10:51879041-51879247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:230-439
               
               
               Cow position:chr10:41132443-41132237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):189, 73

               
               
               Conread position:230-440
               
               
               Cow position:chr10:45658320-45658117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):189, 47

               
               
               Conread position:230-442
               
               
               Cow position:chr10:6174125-6174322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr10:9656344-9656553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):192, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr10:16645006-16645217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:230-442
               
               
               Cow position:chr10:23127805-23128017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:230-442
               
               
               Cow position:chr10:23379310-23379103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:230-442
               
               
               Cow position:chr10:33666023-33665812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):189, 79

               
               
               Conread position:230-442
               
               
               Cow position:chr10:35605225-35605019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr10:41408447-41408244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:230-442
               
               
               Cow position:chr10:41737472-41737260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr10:51944539-51944333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:230-442
               
               
               Cow position:chr10:52125511-52125715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 88

               
               
               Conread position:230-444
               
               
               Cow position:chr10:44730293-44730512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 134

               
               
               Conread position:230-457
               
               
               Cow position:chr10:48353761-48353980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):189, 60

               
               
               Conread position:230-469
               
               
               Cow position:chr10:50109717-50109958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:230-487
               
               
               Cow position:chr10:14947434-14947178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:230-490
               
               
               Cow position:chr10:22508996-22509261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:230-490
               
               
               Cow position:chr10:25150067-25149808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:230-492
               
               
               Cow position:chr10:43487896-43487625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:230-492
               
               
               Cow position:chr10:46327871-46327602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-493
               
               
               Cow position:chr10:4109759-4109504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):111, 82

               
               
               Conread position:230-494
               
               
               Cow position:chr10:7817300-7817017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr10:10138041-10137779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:230-494
               
               
               Cow position:chr10:11081153-11080873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 250

               
               
               Conread position:230-494
               
               
               Cow position:chr10:15868436-15868161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:230-494
               
               
               Cow position:chr10:19372153-19372426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr10:23310845-23311103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr10:24004282-24004558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr10:24756589-24756328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr10:25699843-25699562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr10:33084248-33084525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 188

               
               
               Conread position:230-494
               
               
               Cow position:chr10:33573066-33573329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):99, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr10:39874960-39875238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr10:45378820-45379092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr10:49942653-49942378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 233

               
               
               Conread position:230-494
               
               
               Cow position:chr10:52296677-52296406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 127

               
               
               Conread position:230-494
               
               
               Cow position:chr10:56136686-56136407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr10:67379477-67379210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:230-496
               
               
               Cow position:chr10:22390778-22390500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:230-496
               
               
               Cow position:chr10:46850048-46849780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 265

               
               
               Conread position:231-351
               
               
               Cow position:chr10:5265467-5265346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-382
               
               
               Cow position:chr10:14638662-14638800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:231-382
               
               
               Cow position:chr10:69568001-69567858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:231-389
               
               
               Cow position:chr10:35026886-35026728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:231-391
               
               
               Cow position:chr10:25475712-25475554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-393
               
               
               Cow position:chr10:24035839-24036001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr10:22594100-22593935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:231-413
               
               
               Cow position:chr10:57095025-57095201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr10:3708316-3708123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:231-414
               
               
               Cow position:chr10:4626705-4626522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:231-417
               
               
               Cow position:chr10:6986641-6986461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:231-417
               
               
               Cow position:chr10:58651013-58651191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-424
               
               
               Cow position:chr10:14816981-14817171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:231-425
               
               
               Cow position:chr10:55069386-55069195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):189, 86

               
               
               Conread position:231-430
               
               
               Cow position:chr10:37795702-37795917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:231-431
               
               
               Cow position:chr10:43459874-43460072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):188, 71

               
               
               Conread position:231-439
               
               
               Cow position:chr10:6516883-6516670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):81, 174

               
               
               Conread position:231-440
               
               
               Cow position:chr10:8404386-8404187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):126, 66

               
               
               Conread position:231-442
               
               
               Cow position:chr10:30121593-30121375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:231-442
               
               
               Cow position:chr10:32127961-32127732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:231-444
               
               
               Cow position:chr10:10027754-10027542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-451
               
               
               Cow position:chr10:12392428-12392646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:231-451
               
               
               Cow position:chr10:54548682-54548473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:231-473
               
               
               Cow position:chr10:11047025-11047268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 58

               
               
               Conread position:231-488
               
               
               Cow position:chr10:57059094-57059365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:231-488
               
               
               Cow position:chr10:68572535-68572271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:231-492
               
               
               Cow position:chr10:5599819-5600087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):82, 249

               
               
               Conread position:231-492
               
               
               Cow position:chr10:8093139-8093404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:231-492
               
               
               Cow position:chr10:30746856-30746595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:231-494
               
               
               Cow position:chr10:6664210-6663938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr10:9575869-9576126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr10:14396477-14396732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr10:23390139-23390405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:231-494
               
               
               Cow position:chr10:24448039-24447774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):134, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr10:31362036-31362302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:231-494
               
               
               Cow position:chr10:63276569-63276304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:231-496
               
               
               Cow position:chr10:21082550-21082294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):188, 19

               
               
               Conread position:232-351
               
               
               Cow position:chr10:24781594-24781474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr10:54724078-54724192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:232-381
               
               
               Cow position:chr10:49571380-49571239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-385
               
               
               Cow position:chr10:1255274-1255429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:232-387
               
               
               Cow position:chr10:28259354-28259504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:232-389
               
               
               Cow position:chr10:10104958-10104804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-389
               
               
               Cow position:chr10:31202553-31202399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:232-392
               
               
               Cow position:chr10:10866475-10866315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:232-392
               
               
               Cow position:chr10:61146727-61146565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:232-399
               
               
               Cow position:chr10:17652223-17652396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:232-399
               
               
               Cow position:chr10:25046113-25045957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr10:38329824-38329656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:232-410
               
               
               Cow position:chr10:61171436-61171260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:232-413
               
               
               Cow position:chr10:18751297-18751476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr10:20448096-20447920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:232-413
               
               
               Cow position:chr10:34903652-34903478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr10:30888690-30888877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr10:39410978-39410802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:232-417
               
               
               Cow position:chr10:44513082-44513267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:232-420
               
               
               Cow position:chr10:69827603-69827423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-424
               
               
               Cow position:chr10:26102972-26103150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-427
               
               
               Cow position:chr10:31059956-31060145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):149, 29

               
               
               Conread position:232-429
               
               
               Cow position:chr10:36864539-36864351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:232-430
               
               
               Cow position:chr10:7844739-7844534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 137

               
               
               Conread position:232-430
               
               
               Cow position:chr10:14542051-14541852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):68, 93

               
               
               Conread position:232-431
               
               
               Cow position:chr10:24971152-24971346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):187, 75

               
               
               Conread position:232-431
               
               
               Cow position:chr10:39622187-39622375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:232-431
               
               
               Cow position:chr10:46799316-46799122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):187, 45

               
               
               Conread position:232-440
               
               
               Cow position:chr10:6242344-6242538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:232-442
               
               
               Cow position:chr10:2185535-2185319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:232-442
               
               
               Cow position:chr10:19099008-19098810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):152, 86

               
               
               Conread position:232-442
               
               
               Cow position:chr10:32929165-32928945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-443
               
               
               Cow position:chr10:6212433-6212634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:232-459
               
               
               Cow position:chr10:1054567-1054350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):187, 38

               
               
               Conread position:232-463
               
               
               Cow position:chr10:38995414-38995174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:232-467
               
               
               Cow position:chr10:45623610-45623845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:232-485
               
               
               Cow position:chr10:2535741-2535487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):187, 37

               
               
               Conread position:232-488
               
               
               Cow position:chr10:41676236-41676495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-492
               
               
               Cow position:chr10:23346128-23346390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:232-492
               
               
               Cow position:chr10:46195959-46195698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:232-493
               
               
               Cow position:chr10:763084-762825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-493
               
               
               Cow position:chr10:45371236-45370967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 169

               
               
               Conread position:232-494
               
               
               Cow position:chr10:15817619-15817881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr10:22616462-22616726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:232-494
               
               
               Cow position:chr10:28841131-28840864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:232-494
               
               
               Cow position:chr10:30216538-30216796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:232-494
               
               
               Cow position:chr10:34661153-34661401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr10:35901500-35901235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:232-494
               
               
               Cow position:chr10:38241259-38240995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):129, 125

               
               
               Conread position:232-494
               
               
               Cow position:chr10:39228342-39228057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 251

               
               
               Conread position:232-494
               
               
               Cow position:chr10:48679086-48679353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:232-494
               
               
               Cow position:chr10:55064072-55063803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr10:60446909-60446644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:232-494
               
               
               Cow position:chr10:60491084-60491347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr10:60961125-60960848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr10:61509768-61510029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 80

               
               
               Conread position:232-494
               
               
               Cow position:chr10:66199527-66199798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:232-496
               
               
               Cow position:chr10:20095946-20095667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:233-320
               
               
               Cow position:chr10:6530395-6530307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:233-385
               
               
               Cow position:chr10:3562489-3562641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:233-391
               
               
               Cow position:chr10:28571580-28571420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:233-399
               
               
               Cow position:chr10:21348817-21348974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr10:35244303-35244147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr10:69611719-69611553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr10:15383508-15383325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:233-417
               
               
               Cow position:chr10:58148991-58149174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:233-430
               
               
               Cow position:chr10:37708848-37709035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):186, 79

               
               
               Conread position:233-431
               
               
               Cow position:chr10:35245775-35245966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):186, 90

               
               
               Conread position:233-440
               
               
               Cow position:chr10:51289422-51289223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:233-440
               
               
               Cow position:chr10:65345286-65345503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr10:32080445-32080244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-442
               
               
               Cow position:chr10:43272863-43273075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:233-469
               
               
               Cow position:chr10:32973013-32973259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:233-490
               
               
               Cow position:chr10:47543248-47542997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:233-490
               
               
               Cow position:chr10:57461531-57461270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):186, 86

               
               
               Conread position:233-493
               
               
               Cow position:chr10:40163756-40164023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-494
               
               
               Cow position:chr10:6436235-6435971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):186, 85

               
               
               Conread position:233-494
               
               
               Cow position:chr10:35731350-35731611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 82

               
               
               Conread position:233-494
               
               
               Cow position:chr10:37529096-37529354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):181, 80

               
               
               Conread position:233-494
               
               
               Cow position:chr10:53076307-53076033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:233-494
               
               
               Cow position:chr10:54947966-54948223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):151, 73

               
               
               Conread position:233-494
               
               
               Cow position:chr10:62353635-62353375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 78

               
               
               Conread position:233-494
               
               
               Cow position:chr10:64092580-64092840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:233-496
               
               
               Cow position:chr10:28178638-28178902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:234-342
               
               
               Cow position:chr10:50151371-50151481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-350
               
               
               Cow position:chr10:33122403-33122521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-350
               
               
               Cow position:chr10:43909670-43909788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:234-372
               
               
               Cow position:chr10:35715410-35715549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:234-381
               
               
               Cow position:chr10:49174154-49174302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:234-385
               
               
               Cow position:chr10:57588398-57588253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr10:22972827-22972985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr10:52152974-52152810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:234-406
               
               
               Cow position:chr10:40933940-40933764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:234-407
               
               
               Cow position:chr10:41618303-41618476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 86

               
               
               Conread position:234-411
               
               
               Cow position:chr10:14732796-14732630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr10:13384344-13384154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 177

               
               
               Conread position:234-414
               
               
               Cow position:chr10:29831300-29831472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):149, 29

               
               
               Conread position:234-414
               
               
               Cow position:chr10:52062006-52061819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:234-417
               
               
               Cow position:chr10:24560812-24560992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:234-417
               
               
               Cow position:chr10:46043171-46042989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 134

               
               
               Conread position:234-431
               
               
               Cow position:chr10:19679282-19679078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:234-441
               
               
               Cow position:chr10:39258314-39258524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:234-442
               
               
               Cow position:chr10:55733433-55733633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:234-442
               
               
               Cow position:chr10:64285623-64285825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):185, 81

               
               
               Conread position:234-443
               
               
               Cow position:chr10:43676294-43676518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:234-444
               
               
               Cow position:chr10:51803871-51804081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:234-450
               
               
               Cow position:chr10:36399871-36400085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:234-450
               
               
               Cow position:chr10:36400906-36401120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:234-461
               
               
               Cow position:chr10:58183634-58183869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 204

               
               
               Conread position:234-486
               
               
               Cow position:chr10:43586107-43586368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:234-489
               
               
               Cow position:chr10:10751810-10752072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-489
               
               
               Cow position:chr10:45337860-45337595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:234-492
               
               
               Cow position:chr10:28395129-28395390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:234-493
               
               
               Cow position:chr10:50558753-50559014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):182, 52

               
               
               Conread position:234-494
               
               
               Cow position:chr10:33881603-33881871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 91

               
               
               Conread position:234-494
               
               
               Cow position:chr10:62286742-62286465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-496
               
               
               Cow position:chr10:33215969-33215710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):185, 51

               
               
               Conread position:235-374
               
               
               Cow position:chr10:32440378-32440238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:235-378
               
               
               Cow position:chr10:23493513-23493652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:235-379
               
               
               Cow position:chr10:36945623-36945767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:235-385
               
               
               Cow position:chr10:35248964-35249117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:235-394
               
               
               Cow position:chr10:35017914-35017751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 130

               
               
               Conread position:235-397
               
               
               Cow position:chr10:36319503-36319667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:235-397
               
               
               Cow position:chr10:53971930-53972093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:235-399
               
               
               Cow position:chr10:69621659-69621500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:235-406
               
               
               Cow position:chr10:19709560-19709383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr10:37971938-37971775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:235-410
               
               
               Cow position:chr10:50332769-50332598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:235-414
               
               
               Cow position:chr10:1698565-1698746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr10:25466246-25466062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:235-417
               
               
               Cow position:chr10:28223392-28223209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr10:28843536-28843353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr10:38370276-38370459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:235-417
               
               
               Cow position:chr10:42115531-42115355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:235-417
               
               
               Cow position:chr10:49846951-49846770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:235-425
               
               
               Cow position:chr10:11060356-11060541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 82

               
               
               Conread position:235-430
               
               
               Cow position:chr10:6719153-6718955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:235-430
               
               
               Cow position:chr10:44758984-44758790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):181, 85

               
               
               Conread position:235-430
               
               
               Cow position:chr10:59004537-59004329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-439
               
               
               Cow position:chr10:36490194-36489993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:235-442
               
               
               Cow position:chr10:8853726-8853521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 56

               
               
               Conread position:235-442
               
               
               Cow position:chr10:28176226-28176418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr10:35637966-35638170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:235-442
               
               
               Cow position:chr10:36531549-36531760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-442
               
               
               Cow position:chr10:60697453-60697654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):184, 79

               
               
               Conread position:235-445
               
               
               Cow position:chr10:10153181-10152976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:235-450
               
               
               Cow position:chr10:37765213-37764999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-490
               
               
               Cow position:chr10:4711776-4711517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-492
               
               
               Cow position:chr10:6490054-6489783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-492
               
               
               Cow position:chr10:38942615-38942344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr10:1976143-1976404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):163, 11

               
               
               Conread position:235-494
               
               
               Cow position:chr10:1978496-1978757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:235-494
               
               
               Cow position:chr10:6852438-6852175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):184, 12

               
               
               Conread position:235-494
               
               
               Cow position:chr10:11009595-11009324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr10:11463484-11463754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:235-494
               
               
               Cow position:chr10:19539649-19539910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:235-494
               
               
               Cow position:chr10:37512064-37512334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr10:40107279-40107016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:235-494
               
               
               Cow position:chr10:40738166-40737907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr10:43531443-43531172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:235-494
               
               
               Cow position:chr10:49146683-49146431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):181, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr10:55577503-55577228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr10:56733204-56732946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:235-494
               
               
               Cow position:chr10:63484813-63484553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:235-495
               
               
               Cow position:chr10:63268241-63268515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-496
               
               
               Cow position:chr10:37235373-37235640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 66

               
               
               Conread position:236-442
               
               
               Cow position:chr10:54848952-54848751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:236-468
               
               
               Cow position:chr10:23071567-23071802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 192

               
               
               Conread position:236-490
               
               
               Cow position:chr10:40164204-40164442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:236-493
               
               
               Cow position:chr10:49455921-49456175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:236-494
               
               
               Cow position:chr10:17073192-17073453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:236-494
               
               
               Cow position:chr10:37068246-37068505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):183, 78

               
               
               Conread position:236-494
               
               
               Cow position:chr10:66128025-66127775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:237-378
               
               
               Cow position:chr10:24421998-24422141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:237-417
               
               
               Cow position:chr10:64438345-64438161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:237-438
               
               
               Cow position:chr10:42637403-42637206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:238-417
               
               
               Cow position:chr10:12253263-12253434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:238-429
               
               
               Cow position:chr10:37507979-37508165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):181, 77

               
               
               Conread position:238-439
               
               
               Cow position:chr10:50533705-50533892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr10:5543076-5543279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):181, 157

               
               
               Conread position:238-442
               
               
               Cow position:chr10:49634238-49634036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):181, 66

               
               
               Conread position:238-485
               
               
               Cow position:chr10:35867844-35868097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:238-490
               
               
               Cow position:chr10:48462174-48462422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):205, 48

               
               
               Conread position:238-492
               
               
               Cow position:chr10:29379798-29380047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):181, 81

               
               
               Conread position:238-494
               
               
               Cow position:chr10:721463-721211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):163, 74

               
               
               Conread position:239-408
               
               
               Cow position:chr10:4170513-4170688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:239-492
               
               
               Cow position:chr10:56828147-56828405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:240-373
               
               
               Cow position:chr10:48130186-48130056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr10:10476533-10476674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr10:25142365-25142516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr10:47559389-47559534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:240-397
               
               
               Cow position:chr10:64198882-64198736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr10:68910973-68911125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr10:61039290-61039132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):135, 66

               
               
               Conread position:240-402
               
               
               Cow position:chr10:18155493-18155330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:240-406
               
               
               Cow position:chr10:19238708-19238875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:240-407
               
               
               Cow position:chr10:49142335-49142502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:240-410
               
               
               Cow position:chr10:1417763-1417602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr10:27544623-27544455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr10:33772621-33772446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:240-417
               
               
               Cow position:chr10:36855956-36856136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-418
               
               
               Cow position:chr10:54776717-54776540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:240-427
               
               
               Cow position:chr10:44764321-44764511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:240-431
               
               
               Cow position:chr10:55043469-55043662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 145

               
               
               Conread position:240-442
               
               
               Cow position:chr10:2857218-2857017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:240-442
               
               
               Cow position:chr10:7835424-7835617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:240-442
               
               
               Cow position:chr10:11112793-11112593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:240-442
               
               
               Cow position:chr10:16830213-16830417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:240-442
               
               
               Cow position:chr10:20553350-20553153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):160, 28

               
               
               Conread position:240-442
               
               
               Cow position:chr10:34674185-34673987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 80

               
               
               Conread position:240-442
               
               
               Cow position:chr10:38205546-38205741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):176, 75

               
               
               Conread position:240-442
               
               
               Cow position:chr10:45294969-45295173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:240-442
               
               
               Cow position:chr10:55599983-55600187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:240-443
               
               
               Cow position:chr10:41626763-41626564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:240-444
               
               
               Cow position:chr10:5784081-5784289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:240-461
               
               
               Cow position:chr10:17691066-17691286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:240-490
               
               
               Cow position:chr10:17844936-17844680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:240-492
               
               
               Cow position:chr10:15248868-15249134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:240-492
               
               
               Cow position:chr10:31366196-31366430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:240-492
               
               
               Cow position:chr10:69564777-69564520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:240-493
               
               
               Cow position:chr10:37818385-37818644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:240-494
               
               
               Cow position:chr10:1996503-1996750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):242, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr10:2613537-2613278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):91, 59

               
               
               Conread position:240-494
               
               
               Cow position:chr10:6720072-6719806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:240-494
               
               
               Cow position:chr10:7383446-7383699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr10:8277726-8277461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:240-494
               
               
               Cow position:chr10:10148821-10148566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 210

               
               
               Conread position:240-494
               
               
               Cow position:chr10:19104011-19104258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:240-494
               
               
               Cow position:chr10:20391263-20391529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 126

               
               
               Conread position:240-494
               
               
               Cow position:chr10:23506318-23506579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 141

               
               
               Conread position:240-494
               
               
               Cow position:chr10:25342753-25342514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 86

               
               
               Conread position:240-494
               
               
               Cow position:chr10:33914897-33915152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr10:34646285-34646537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):182, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr10:38430396-38430650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):117, 83

               
               
               Conread position:240-494
               
               
               Cow position:chr10:58451210-58451460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):179, 24

               
               
               Conread position:240-494
               
               
               Cow position:chr10:61921972-61922229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr10:64182614-64182363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:241-397
               
               
               Cow position:chr10:10575479-10575330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:241-417
               
               
               Cow position:chr10:27136515-27136693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:241-429
               
               
               Cow position:chr10:443742-443566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:241-434
               
               
               Cow position:chr10:28241905-28242095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:241-442
               
               
               Cow position:chr10:37174283-37174483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:241-442
               
               
               Cow position:chr10:47182396-47182599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:241-445
               
               
               Cow position:chr10:41116070-41115871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):178, 58

               
               
               Conread position:241-472
               
               
               Cow position:chr10:59849578-59849356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:241-490
               
               
               Cow position:chr10:21923347-21923603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:241-494
               
               
               Cow position:chr10:3364015-3364273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:241-494
               
               
               Cow position:chr10:6384695-6384445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:241-494
               
               
               Cow position:chr10:16093380-16093122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:241-494
               
               
               Cow position:chr10:48178509-48178265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):178, 36

               
               
               Conread position:241-494
               
               
               Cow position:chr10:59462298-59462045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):159, 26

               
               
               Conread position:242-369
               
               
               Cow position:chr10:26607447-26607572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:242-424
               
               
               Cow position:chr10:58653744-58653913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):180, 65

               
               
               Conread position:242-434
               
               
               Cow position:chr10:49923197-49923396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr10:24871340-24871134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr10:37425969-37426164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:242-494
               
               
               Cow position:chr10:5151521-5151254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):80, 147

               
               
               Conread position:242-494
               
               
               Cow position:chr10:17022400-17022652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):177, 29

               
               
               Conread position:243-485
               
               
               Cow position:chr10:51727257-51727497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:243-492
               
               
               Cow position:chr10:4151722-4151460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 216

               
               
               Conread position:243-494
               
               
               Cow position:chr10:40420687-40420931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):183, 61

               
               
               Conread position:244-442
               
               
               Cow position:chr10:42746077-42745887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:244-442
               
               
               Cow position:chr10:49168861-49169066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:244-494
               
               
               Cow position:chr10:6505519-6505264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:244-494
               
               
               Cow position:chr10:22888651-22888904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):175, 14

               
               
               Conread position:244-494
               
               
               Cow position:chr10:30522897-30523153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 71

               
               
               Conread position:244-494
               
               
               Cow position:chr10:48407300-48407047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:245-417
               
               
               Cow position:chr10:2709034-2708867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:245-442
               
               
               Cow position:chr10:30929719-30929918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):164, 56

               
               
               Conread position:245-442
               
               
               Cow position:chr10:50182888-50183074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:245-443
               
               
               Cow position:chr10:17602173-17602365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:245-465
               
               
               Cow position:chr10:10985346-10985555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:245-485
               
               
               Cow position:chr10:55319659-55319410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:245-493
               
               
               Cow position:chr10:33195211-33194943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:245-494
               
               
               Cow position:chr10:57142038-57142306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):61, 234

               
               
               Conread position:247-414
               
               
               Cow position:chr10:28194198-28194361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:247-415
               
               
               Cow position:chr10:21564913-21564746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:247-425
               
               
               Cow position:chr10:35486271-35486451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:247-442
               
               
               Cow position:chr10:29102179-29102374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:247-492
               
               
               Cow position:chr10:53674991-53674737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:247-494
               
               
               Cow position:chr10:38944423-38944169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:247-494
               
               
               Cow position:chr10:46262348-46262100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:248-397
               
               
               Cow position:chr10:15899942-15899797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:248-404
               
               
               Cow position:chr10:6268840-6268688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:248-406
               
               
               Cow position:chr10:8281430-8281270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr10:37785194-37785370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:248-417
               
               
               Cow position:chr10:48619851-48620016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:248-426
               
               
               Cow position:chr10:17448046-17448213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:248-426
               
               
               Cow position:chr10:49382800-49382970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:248-427
               
               
               Cow position:chr10:15241128-15241309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:249-382
               
               
               Cow position:chr10:60240058-60240189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:250-414
               
               
               Cow position:chr10:64394243-64394077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:250-494
               
               
               Cow position:chr10:15309248-15309491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:251-423
               
               
               Cow position:chr10:61982550-61982376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:253-494
               
               
               Cow position:chr10:1488986-1488751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):166, 62

               
               
               Conread position:253-494
               
               
               Cow position:chr10:35802206-35802457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:253-494
               
               
               Cow position:chr10:61426306-61426541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):147, 55

               
               
               Conread position:254-442
               
               
               Cow position:chr10:46575663-46575480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):165, 37

               
               
               Conread position:255-494
               
               
               Cow position:chr10:10720516-10720761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:256-431
               
               
               Cow position:chr10:32503586-32503407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:256-442
               
               
               Cow position:chr10:54699550-54699736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 76

               
               
               Conread position:258-410
               
               
               Cow position:chr10:35795503-35795341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:258-492
               
               
               Cow position:chr10:69997646-69997889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:264-494
               
               
               Cow position:chr10:42123442-42123682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:265-491
               
               
               Cow position:chr10:25970-25737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:266-423
               
               
               Cow position:chr10:59159397-59159231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:266-492
               
               
               Cow position:chr10:52278869-52278644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):121, 51

               
               
               Conread position:266-493
               
               
               Cow position:chr10:21422017-21422247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:266-494
               
               
               Cow position:chr10:37295526-37295753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):153, 182

               
               
               Conread position:268-489
               
               
               Cow position:chr10:6665423-6665638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):146, 46

               
               
               Conread position:268-494
               
               
               Cow position:chr10:9675325-9675548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:269-494
               
               
               Cow position:chr10:46886292-46886080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):150, 45

               
               
               Conread position:273-397
               
               
               Cow position:chr10:51740634-51740511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr10:36775216-36775358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:274-439
               
               
               Cow position:chr10:26631538-26631381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):145, 43

               
               
               Conread position:274-469
               
               
               Cow position:chr10:13197687-13197887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 177

               
               
               Conread position:274-494
               
               
               Cow position:chr10:10750109-10750341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:275-415
               
               
               Cow position:chr10:41162841-41162984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:281-397
               
               
               Cow position:chr10:282337-282222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:281-494
               
               
               Cow position:chr10:37913050-37913277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 197

               
               
               Conread position:283-413
               
               
               Cow position:chr10:45370357-45370486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:283-494
               
               
               Cow position:chr10:53973973-53973759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:284-414
               
               
               Cow position:chr10:15570336-15570205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):116, 40

               
               
               Conread position:284-442
               
               
               Cow position:chr10:63628314-63628158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):135, 34

               
               
               Conread position:292-397
               
               
               Cow position:chr10:34687203-34687099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:292-492
               
               
               Cow position:chr10:6543845-6543636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:294-442
               
               
               Cow position:chr10:24902866-24903015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:295-440
               
               
               Cow position:chr10:59839173-59839315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:295-494
               
               
               Cow position:chr10:6530304-6530108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:295-494
               
               
               Cow position:chr10:30613944-30613750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:296-494
               
               
               Cow position:chr10:35778786-35778990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:296-494
               
               
               Cow position:chr10:58259409-58259606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 51

               
               
               Conread position:300-494
               
               
               Cow position:chr10:29252276-29252077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:302-431
               
               
               Cow position:chr10:13158224-13158093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:302-431
               
               
               Cow position:chr10:46941365-46941498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:302-440
               
               
               Cow position:chr10:24375654-24375520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr10:34174868-34175008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:302-490
               
               
               Cow position:chr10:11213223-11213028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:302-490
               
               
               Cow position:chr10:20132418-20132610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-492
               
               
               Cow position:chr10:51696851-51696654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 98

               
               
               Conread position:302-494
               
               
               Cow position:chr10:77480-77295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr10:28776461-28776262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 169

               
               
               Conread position:303-442
               
               
               Cow position:chr10:49253471-49253336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr10:19549377-19549575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr10:24732412-24732221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):141, 21

               
               
               Conread position:304-427
               
               
               Cow position:chr10:9578850-9578975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:304-494
               
               
               Cow position:chr10:53405579-53405387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:305-494
               
               
               Cow position:chr10:41760214-41760411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):114, 96

               
               
               Conread position:305-496
               
               
               Cow position:chr10:49947774-49947972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:307-472
               
               
               Cow position:chr10:36947086-36947257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:307-490
               
               
               Cow position:chr10:28429399-28429582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:308-494
               
               
               Cow position:chr10:30360623-30360430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):115, 72

               
               
               Conread position:308-494
               
               
               Cow position:chr10:33116849-33117039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:310-494
               
               
               Cow position:chr10:52827499-52827678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:313-494
               
               
               Cow position:chr10:54819365-54819177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 87

               
               
               Conread position:314-496
               
               
               Cow position:chr10:973232-973049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 76

               
               
               Conread position:318-496
               
               
               Cow position:chr10:8934565-8934388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:319-490
               
               
               Cow position:chr10:15425143-15424969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:319-494
               
               
               Cow position:chr10:22633532-22633713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:324-442
               
               
               Cow position:chr10:48898754-48898635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:324-492
               
               
               Cow position:chr10:37768391-37768215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:324-493
               
               
               Cow position:chr10:37668068-37668245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:324-494
               
               
               Cow position:chr10:27828409-27828236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:324-494
               
               
               Cow position:chr10:44421817-44421995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:324-494
               
               
               Cow position:chr10:51861990-51862166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:326-494
               
               
               Cow position:chr10:8923366-8923189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:328-493
               
               
               Cow position:chr10:17293347-17293522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:328-494
               
               
               Cow position:chr10:22527817-22527992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 164

               
               
               Conread position:329-494
               
               
               Cow position:chr10:6199103-6198929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:329-494
               
               
               Cow position:chr10:24763566-24763391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:329-494
               
               
               Cow position:chr10:45624073-45624238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:330-494
               
               
               Cow position:chr10:48573597-48573770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:331-486
               
               
               Cow position:chr10:25193060-25192912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 104

               
               
               Conread position:335-494
               
               
               Cow position:chr10:38014443-38014277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:341-494
               
               
               Cow position:chr10:15462564-15462401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:164-435
               
               
               Cow position:chr11:41576613-41576885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:193-375
               
               
               Cow position:chr11:63977280-63977101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:211-492
               
               
               Cow position:chr11:41378-41094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:213-440
               
               
               Cow position:chr11:38211846-38211623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:217-426
               
               
               Cow position:chr11:22884605-22884405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):202, 25

               
               
               Conread position:218-442
               
               
               Cow position:chr11:42083654-42083448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:218-469
               
               
               Cow position:chr11:15017259-15017006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):94, 233

               
               
               Conread position:219-354
               
               
               Cow position:chr11:70273662-70273525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:219-494
               
               
               Cow position:chr11:49153140-49152869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):200, 85

               
               
               Conread position:220-340
               
               
               Cow position:chr11:14492368-14492488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-351
               
               
               Cow position:chr11:6638802-6638931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:220-390
               
               
               Cow position:chr11:36266066-36266238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:220-430
               
               
               Cow position:chr11:68326663-68326876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 143

               
               
               Conread position:221-442
               
               
               Cow position:chr11:13042950-13043170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):195, 93

               
               
               Conread position:222-347
               
               
               Cow position:chr11:22720194-22720061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr11:20093843-20093699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):139, 64

               
               
               Conread position:222-405
               
               
               Cow position:chr11:47904332-47904133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:222-417
               
               
               Cow position:chr11:85186331-85186526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:222-431
               
               
               Cow position:chr11:1980068-1980281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 142

               
               
               Conread position:222-431
               
               
               Cow position:chr11:31228150-31227949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):197, 37

               
               
               Conread position:222-442
               
               
               Cow position:chr11:35669771-35669976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):197, 18

               
               
               Conread position:222-490
               
               
               Cow position:chr11:30165708-30165433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):92, 141

               
               
               Conread position:222-490
               
               
               Cow position:chr11:49057580-49057324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):198, 80

               
               
               Conread position:223-417
               
               
               Cow position:chr11:27913486-27913286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:223-440
               
               
               Cow position:chr11:46746831-46746609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:223-442
               
               
               Cow position:chr11:897861-897649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:223-488
               
               
               Cow position:chr11:83398103-83397829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:223-492
               
               
               Cow position:chr11:15339252-15338985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:223-494
               
               
               Cow position:chr11:1848969-1849254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:223-494
               
               
               Cow position:chr11:7874333-7874063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:223-494
               
               
               Cow position:chr11:42159867-42160143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):196, 7

               
               
               Conread position:223-496
               
               
               Cow position:chr11:16342052-16342315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:224-406
               
               
               Cow position:chr11:17074032-17074210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:224-407
               
               
               Cow position:chr11:4411678-4411857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:224-427
               
               
               Cow position:chr11:77241896-77241697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-494
               
               
               Cow position:chr11:10095538-10095263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 94

               
               
               Conread position:224-494
               
               
               Cow position:chr11:18508838-18509099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:225-338
               
               
               Cow position:chr11:41295030-41295143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:225-385
               
               
               Cow position:chr11:12742302-12742457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:225-390
               
               
               Cow position:chr11:4653066-4653226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:225-392
               
               
               Cow position:chr11:36361446-36361616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:225-406
               
               
               Cow position:chr11:19549670-19549493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:225-407
               
               
               Cow position:chr11:68570188-68570369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:225-408
               
               
               Cow position:chr11:36104511-36104323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:225-416
               
               
               Cow position:chr11:85571612-85571803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:225-427
               
               
               Cow position:chr11:19578827-19579025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:225-442
               
               
               Cow position:chr11:58173826-58173601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:225-443
               
               
               Cow position:chr11:32260726-32260509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:225-487
               
               
               Cow position:chr11:35212976-35213245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:225-492
               
               
               Cow position:chr11:30192373-30192094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:225-494
               
               
               Cow position:chr11:35536769-35536505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):194, 43

               
               
               Conread position:225-494
               
               
               Cow position:chr11:52380679-52380956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:226-388
               
               
               Cow position:chr11:65431710-65431549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:226-426
               
               
               Cow position:chr11:46784656-46784466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):193, 92

               
               
               Conread position:226-442
               
               
               Cow position:chr11:17227457-17227666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:226-494
               
               
               Cow position:chr11:32398834-32398554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:226-494
               
               
               Cow position:chr11:70951060-70950799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):214, 80

               
               
               Conread position:227-311
               
               
               Cow position:chr11:46335042-46334958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-317
               
               
               Cow position:chr11:47883015-47882926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:227-332
               
               
               Cow position:chr11:59744188-59744082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-351
               
               
               Cow position:chr11:80824095-80823977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:227-364
               
               
               Cow position:chr11:68592212-68592072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:227-374
               
               
               Cow position:chr11:18154365-18154508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-376
               
               
               Cow position:chr11:81170221-81170065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr11:2310259-2310115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr11:4390094-4389941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:227-380
               
               
               Cow position:chr11:86925772-86925922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:227-386
               
               
               Cow position:chr11:7928869-7928706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:227-388
               
               
               Cow position:chr11:2937480-2937633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr11:18574662-18574826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr11:15999852-15999686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:227-390
               
               
               Cow position:chr11:51683408-51683244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):97, 120

               
               
               Conread position:227-397
               
               
               Cow position:chr11:6581026-6580854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:227-397
               
               
               Cow position:chr11:82732958-82733128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:227-399
               
               
               Cow position:chr11:71456022-71455840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr11:15591288-15591460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr11:44176788-44176610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:227-404
               
               
               Cow position:chr11:83249588-83249417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:227-405
               
               
               Cow position:chr11:25721813-25721981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr11:74839795-74839623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr11:75388185-75388363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):139, 87

               
               
               Conread position:227-411
               
               
               Cow position:chr11:19147950-19148129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr11:36521070-36520882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:227-413
               
               
               Cow position:chr11:66685719-66685900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:227-414
               
               
               Cow position:chr11:4363724-4363907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:227-414
               
               
               Cow position:chr11:45671185-45671365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:227-417
               
               
               Cow position:chr11:1485042-1485225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):113, 79

               
               
               Conread position:227-418
               
               
               Cow position:chr11:40538741-40538551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):159, 107

               
               
               Conread position:227-419
               
               
               Cow position:chr11:59471296-59471102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 186

               
               
               Conread position:227-430
               
               
               Cow position:chr11:49396334-49396538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):109, 119

               
               
               Conread position:227-430
               
               
               Cow position:chr11:77017422-77017229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-434
               
               
               Cow position:chr11:9699062-9699261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:227-441
               
               
               Cow position:chr11:82730793-82731021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr11:1067247-1067464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:227-442
               
               
               Cow position:chr11:26143907-26144120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:227-442
               
               
               Cow position:chr11:27461919-27462122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:227-442
               
               
               Cow position:chr11:30638759-30638974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:227-442
               
               
               Cow position:chr11:47837512-47837296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:227-442
               
               
               Cow position:chr11:61454309-61454538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:227-442
               
               
               Cow position:chr11:63382005-63382215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):192, 72

               
               
               Conread position:227-442
               
               
               Cow position:chr11:70304267-70304047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):89, 210

               
               
               Conread position:227-442
               
               
               Cow position:chr11:70483659-70483876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 135

               
               
               Conread position:227-443
               
               
               Cow position:chr11:30172493-30172284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:227-443
               
               
               Cow position:chr11:85723887-85723672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):6, 131

               
               
               Conread position:227-444
               
               
               Cow position:chr11:84764209-84764010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:227-464
               
               
               Cow position:chr11:3175860-3175627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:227-472
               
               
               Cow position:chr11:14470553-14470315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:227-490
               
               
               Cow position:chr11:27719147-27719400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:227-490
               
               
               Cow position:chr11:62239933-62239665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):192, 71

               
               
               Conread position:227-493
               
               
               Cow position:chr11:15772521-15772796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):103, 119

               
               
               Conread position:227-494
               
               
               Cow position:chr11:2084337-2084059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:227-494
               
               
               Cow position:chr11:6194580-6194325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):173, 76

               
               
               Conread position:227-494
               
               
               Cow position:chr11:20762044-20761764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 169

               
               
               Conread position:227-494
               
               
               Cow position:chr11:22977693-22977953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):192, 15

               
               
               Conread position:227-494
               
               
               Cow position:chr11:27248680-27248410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 90

               
               
               Conread position:227-494
               
               
               Cow position:chr11:33348007-33348266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):192, 51

               
               
               Conread position:227-494
               
               
               Cow position:chr11:40459297-40459029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr11:40818441-40818720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 22

               
               
               Conread position:227-494
               
               
               Cow position:chr11:41293612-41293900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr11:46922695-46922981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):116, 89

               
               
               Conread position:227-494
               
               
               Cow position:chr11:64044409-64044159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:227-494
               
               
               Cow position:chr11:65607498-65607773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:227-494
               
               
               Cow position:chr11:66572301-66572583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr11:67614733-67615011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr11:70251106-70250836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:227-494
               
               
               Cow position:chr11:70600635-70600901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 194

               
               
               Conread position:227-494
               
               
               Cow position:chr11:71492672-71492937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):216, 31

               
               
               Conread position:227-494
               
               
               Cow position:chr11:80564490-80564210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:227-495
               
               
               Cow position:chr11:7385626-7385354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 71

               
               
               Conread position:227-496
               
               
               Cow position:chr11:27404879-27405156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:228-382
               
               
               Cow position:chr11:17465888-17466053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:228-410
               
               
               Cow position:chr11:80296668-80296844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):112, 39

               
               
               Conread position:228-414
               
               
               Cow position:chr11:73940371-73940559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr11:53510299-53510524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:228-442
               
               
               Cow position:chr11:62811488-62811273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:228-442
               
               
               Cow position:chr11:66188129-66188341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:228-490
               
               
               Cow position:chr11:41985857-41986122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):191, 89

               
               
               Conread position:228-494
               
               
               Cow position:chr11:11558359-11558085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:228-494
               
               
               Cow position:chr11:45276957-45277228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):80, 137

               
               
               Conread position:228-494
               
               
               Cow position:chr11:62663045-62663303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:228-494
               
               
               Cow position:chr11:64101964-64101700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:228-494
               
               
               Cow position:chr11:72375475-72375768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:229-360
               
               
               Cow position:chr11:77468226-77468362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:229-361
               
               
               Cow position:chr11:6154758-6154628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:229-361
               
               
               Cow position:chr11:34233633-34233504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:229-406
               
               
               Cow position:chr11:11483511-11483325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 178

               
               
               Conread position:229-462
               
               
               Cow position:chr11:64105183-64104951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:229-466
               
               
               Cow position:chr11:47638834-47639078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 135

               
               
               Conread position:229-488
               
               
               Cow position:chr11:4636985-4637250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):190, 85

               
               
               Conread position:229-494
               
               
               Cow position:chr11:11125855-11125580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:229-494
               
               
               Cow position:chr11:21508201-21507921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 139

               
               
               Conread position:229-494
               
               
               Cow position:chr11:68904898-68905157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):193, 72

               
               
               Conread position:229-494
               
               
               Cow position:chr11:84890537-84890803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:230-315
               
               
               Cow position:chr11:51743311-51743227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-319
               
               
               Cow position:chr11:76995105-76995194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-338
               
               
               Cow position:chr11:47904425-47904318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:230-340
               
               
               Cow position:chr11:22102569-22102681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr11:65939673-65939799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:230-355
               
               
               Cow position:chr11:85262705-85262580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:230-370
               
               
               Cow position:chr11:31525467-31525602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr11:38738920-38739060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-377
               
               
               Cow position:chr11:62655880-62655735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-381
               
               
               Cow position:chr11:84748047-84748203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:230-382
               
               
               Cow position:chr11:28078678-28078530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr11:57170421-57170565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-386
               
               
               Cow position:chr11:65436411-65436253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:230-389
               
               
               Cow position:chr11:17369715-17369560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:230-389
               
               
               Cow position:chr11:73638044-73637884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):86, 135

               
               
               Conread position:230-390
               
               
               Cow position:chr11:42786493-42786660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr11:75915174-75915020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:230-396
               
               
               Cow position:chr11:37778628-37778803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr11:23220549-23220385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr11:33369341-33369171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr11:57767378-57767210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr11:8264434-8264603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:230-399
               
               
               Cow position:chr11:25968664-25968834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 154

               
               
               Conread position:230-399
               
               
               Cow position:chr11:32800816-32800645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr11:35732894-35733064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr11:76896184-76896355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-402
               
               
               Cow position:chr11:69421516-69421696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 154

               
               
               Conread position:230-405
               
               
               Cow position:chr11:44614977-44615154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 78

               
               
               Conread position:230-405
               
               
               Cow position:chr11:63849761-63849938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-406
               
               
               Cow position:chr11:26057458-26057638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr11:81143355-81143529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):146, 72

               
               
               Conread position:230-407
               
               
               Cow position:chr11:79548744-79548926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:230-409
               
               
               Cow position:chr11:84968554-84968386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 40

               
               
               Conread position:230-410
               
               
               Cow position:chr11:7427745-7427932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr11:41213241-41213056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:230-411
               
               
               Cow position:chr11:49486978-49486786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 137

               
               
               Conread position:230-414
               
               
               Cow position:chr11:19657026-19657209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:230-414
               
               
               Cow position:chr11:30808408-30808589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:230-414
               
               
               Cow position:chr11:41239002-41239186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:230-414
               
               
               Cow position:chr11:44859094-44859284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:230-414
               
               
               Cow position:chr11:74427868-74427682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:230-415
               
               
               Cow position:chr11:54428809-54428622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:230-416
               
               
               Cow position:chr11:37435797-37435985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:230-417
               
               
               Cow position:chr11:3715011-3714822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:230-417
               
               
               Cow position:chr11:6094215-6094401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 76

               
               
               Conread position:230-417
               
               
               Cow position:chr11:29482252-29482434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:230-417
               
               
               Cow position:chr11:32710704-32710516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:230-417
               
               
               Cow position:chr11:45350321-45350510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr11:46884568-46884375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr11:58102568-58102759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:230-417
               
               
               Cow position:chr11:64781277-64781088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 133

               
               
               Conread position:230-417
               
               
               Cow position:chr11:66099668-66099861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr11:80370303-80370116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-424
               
               
               Cow position:chr11:7571809-7571618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):189, 82

               
               
               Conread position:230-426
               
               
               Cow position:chr11:60296927-60296722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 176

               
               
               Conread position:230-429
               
               
               Cow position:chr11:71022189-71021989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:230-430
               
               
               Cow position:chr11:44620142-44619943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:230-438
               
               
               Cow position:chr11:17517588-17517378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:230-440
               
               
               Cow position:chr11:17638329-17638557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:230-441
               
               
               Cow position:chr11:71111087-71110868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:230-442
               
               
               Cow position:chr11:8670206-8669986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr11:11533746-11533952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:230-442
               
               
               Cow position:chr11:32782685-32782908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr11:41437996-41438211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr11:43914482-43914267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 133

               
               
               Conread position:230-442
               
               
               Cow position:chr11:45619539-45619328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr11:52690336-52690544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:230-442
               
               
               Cow position:chr11:69417592-69417379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:230-443
               
               
               Cow position:chr11:34968424-34968639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:230-446
               
               
               Cow position:chr11:59024164-59024389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:230-456
               
               
               Cow position:chr11:63485121-63484899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):196, 76

               
               
               Conread position:230-460
               
               
               Cow position:chr11:13940376-13940141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 62

               
               
               Conread position:230-464
               
               
               Cow position:chr11:66041461-66041231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-466
               
               
               Cow position:chr11:16315063-16314824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-467
               
               
               Cow position:chr11:49255599-49255354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:230-472
               
               
               Cow position:chr11:40395626-40395386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:230-475
               
               
               Cow position:chr11:69168777-69168529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 221

               
               
               Conread position:230-478
               
               
               Cow position:chr11:29699498-29699768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 256

               
               
               Conread position:230-480
               
               
               Cow position:chr11:38226432-38226185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:230-484
               
               
               Cow position:chr11:17889538-17889798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-485
               
               
               Cow position:chr11:64048580-64048332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:230-487
               
               
               Cow position:chr11:6857919-6857663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:230-488
               
               
               Cow position:chr11:30867366-30867104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-490
               
               
               Cow position:chr11:9270549-9270804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):178, 43

               
               
               Conread position:230-490
               
               
               Cow position:chr11:19946610-19946356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):189, 31

               
               
               Conread position:230-490
               
               
               Cow position:chr11:30708694-30708426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 140

               
               
               Conread position:230-490
               
               
               Cow position:chr11:39462808-39462543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-493
               
               
               Cow position:chr11:55053052-55052799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):189, 43

               
               
               Conread position:230-494
               
               
               Cow position:chr11:258984-259255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:230-494
               
               
               Cow position:chr11:2907345-2907601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr11:2925119-2925372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):189, 54

               
               
               Conread position:230-494
               
               
               Cow position:chr11:5075041-5075310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr11:7458091-7458366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr11:25620201-25620482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr11:27747107-27746843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr11:35724159-35723897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr11:36058987-36058721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 190

               
               
               Conread position:230-494
               
               
               Cow position:chr11:36914376-36914650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr11:36940405-36940678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr11:37918859-37919127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:230-494
               
               
               Cow position:chr11:40608404-40608679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:230-494
               
               
               Cow position:chr11:48429307-48429024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:230-494
               
               
               Cow position:chr11:48672903-48672631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr11:49872698-49872969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 171

               
               
               Conread position:230-494
               
               
               Cow position:chr11:64335019-64334769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):156, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr11:65495155-65495408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr11:68909665-68909934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr11:70756663-70756399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):185, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr11:72871086-72870818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 41

               
               
               Conread position:230-494
               
               
               Cow position:chr11:80923137-80923406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr11:82940446-82940704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:230-494
               
               
               Cow position:chr11:83043178-83043446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-496
               
               
               Cow position:chr11:62578992-62578717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):100, 59

               
               
               Conread position:231-351
               
               
               Cow position:chr11:73076234-73076347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:231-371
               
               
               Cow position:chr11:13049071-13049207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 86

               
               
               Conread position:231-372
               
               
               Cow position:chr11:52963020-52962881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:231-380
               
               
               Cow position:chr11:38656989-38657145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:231-385
               
               
               Cow position:chr11:70821232-70821078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 94

               
               
               Conread position:231-395
               
               
               Cow position:chr11:81928324-81928484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:231-398
               
               
               Cow position:chr11:63695655-63695825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:231-399
               
               
               Cow position:chr11:62567014-62566858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr11:63201444-63201273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:231-399
               
               
               Cow position:chr11:81175786-81175616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-408
               
               
               Cow position:chr11:30485845-30485662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:231-411
               
               
               Cow position:chr11:18924935-18924753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:231-411
               
               
               Cow position:chr11:42206604-42206429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr11:2484608-2484793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:231-417
               
               
               Cow position:chr11:20117265-20117075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:231-417
               
               
               Cow position:chr11:29308770-29308582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-440
               
               
               Cow position:chr11:77013958-77013762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-441
               
               
               Cow position:chr11:18915197-18915003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):188, 13

               
               
               Conread position:231-442
               
               
               Cow position:chr11:47784968-47784750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr11:77705939-77705734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:231-478
               
               
               Cow position:chr11:63919879-63920116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):188, 47

               
               
               Conread position:231-490
               
               
               Cow position:chr11:36112597-36112347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):208, 37

               
               
               Conread position:231-491
               
               
               Cow position:chr11:21843951-21844214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):176, 132

               
               
               Conread position:231-492
               
               
               Cow position:chr11:44223069-44222801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):185, 32

               
               
               Conread position:231-494
               
               
               Cow position:chr11:21421750-21422017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:231-494
               
               
               Cow position:chr11:30494176-30493916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr11:33824726-33824973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):221, 76

               
               
               Conread position:231-494
               
               
               Cow position:chr11:42067052-42066776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:231-494
               
               
               Cow position:chr11:47725077-47724820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):188, 43

               
               
               Conread position:231-494
               
               
               Cow position:chr11:51729462-51729205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):188, 70

               
               
               Conread position:231-494
               
               
               Cow position:chr11:55762044-55761788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):188, 18

               
               
               Conread position:231-494
               
               
               Cow position:chr11:67600966-67600700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:231-496
               
               
               Cow position:chr11:34646783-34646503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 248

               
               
               Conread position:232-320
               
               
               Cow position:chr11:27442204-27442292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-349
               
               
               Cow position:chr11:53460885-53460766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 115

               
               
               Conread position:232-351
               
               
               Cow position:chr11:63547006-63546889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:232-360
               
               
               Cow position:chr11:43736920-43737049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:232-368
               
               
               Cow position:chr11:30711907-30712045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 110

               
               
               Conread position:232-373
               
               
               Cow position:chr11:46592849-46592709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:232-374
               
               
               Cow position:chr11:32586939-32587079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-389
               
               
               Cow position:chr11:12528097-12528245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-390
               
               
               Cow position:chr11:34279923-34279771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:232-397
               
               
               Cow position:chr11:43641575-43641408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:232-399
               
               
               Cow position:chr11:8421938-8422098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-406
               
               
               Cow position:chr11:23278776-23278952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:232-408
               
               
               Cow position:chr11:69676168-69676342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):141, 48

               
               
               Conread position:232-410
               
               
               Cow position:chr11:71814889-71814715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:232-417
               
               
               Cow position:chr11:80007875-80008066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:232-418
               
               
               Cow position:chr11:49149233-49149049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):159, 82

               
               
               Conread position:232-419
               
               
               Cow position:chr11:18777406-18777603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-424
               
               
               Cow position:chr11:80412822-80413019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 193

               
               
               Conread position:232-426
               
               
               Cow position:chr11:86689313-86689119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:232-430
               
               
               Cow position:chr11:48315212-48315409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):187, 81

               
               
               Conread position:232-442
               
               
               Cow position:chr11:3896511-3896723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):74, 190

               
               
               Conread position:232-442
               
               
               Cow position:chr11:4207498-4207287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:232-442
               
               
               Cow position:chr11:4225270-4225073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):187, 18

               
               
               Conread position:232-442
               
               
               Cow position:chr11:29659746-29659535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:232-442
               
               
               Cow position:chr11:79466409-79466187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-481
               
               
               Cow position:chr11:48248012-48248286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:232-489
               
               
               Cow position:chr11:42183226-42182964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 175

               
               
               Conread position:232-490
               
               
               Cow position:chr11:8988042-8988305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:232-490
               
               
               Cow position:chr11:63998903-63999168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:232-492
               
               
               Cow position:chr11:47899437-47899199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):184, 70

               
               
               Conread position:232-493
               
               
               Cow position:chr11:36182878-36182608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):168, 49

               
               
               Conread position:232-494
               
               
               Cow position:chr11:375646-375372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:232-494
               
               
               Cow position:chr11:10992450-10992199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:232-494
               
               
               Cow position:chr11:17278496-17278748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:232-494
               
               
               Cow position:chr11:20238863-20238589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr11:21728102-21728357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):184, 27

               
               
               Conread position:232-494
               
               
               Cow position:chr11:43360600-43360865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):194, 78

               
               
               Conread position:232-494
               
               
               Cow position:chr11:48086105-48085833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):164, 74

               
               
               Conread position:232-494
               
               
               Cow position:chr11:50152626-50152898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 93

               
               
               Conread position:232-494
               
               
               Cow position:chr11:53778807-53778533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:232-494
               
               
               Cow position:chr11:55334106-55333829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr11:63433879-63434138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):187, 67

               
               
               Conread position:232-494
               
               
               Cow position:chr11:63866474-63866737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr11:70206502-70206239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr11:72884426-72884669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):187, 26

               
               
               Conread position:232-496
               
               
               Cow position:chr11:48296212-48295948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 48

               
               
               Conread position:232-496
               
               
               Cow position:chr11:70978548-70978815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:233-352
               
               
               Cow position:chr11:31508089-31507975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr11:49568050-49568185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:233-389
               
               
               Cow position:chr11:81340358-81340511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:233-393
               
               
               Cow position:chr11:64096480-64096640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:233-397
               
               
               Cow position:chr11:32108502-32108667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:233-397
               
               
               Cow position:chr11:63484126-63483964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:233-407
               
               
               Cow position:chr11:38223608-38223776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:233-409
               
               
               Cow position:chr11:58048517-58048341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 113

               
               
               Conread position:233-411
               
               
               Cow position:chr11:34778257-34778436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:233-417
               
               
               Cow position:chr11:15366792-15366971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-424
               
               
               Cow position:chr11:49210632-49210825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:233-424
               
               
               Cow position:chr11:80586451-80586268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):186, 14

               
               
               Conread position:233-426
               
               
               Cow position:chr11:74152563-74152761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 191

               
               
               Conread position:233-441
               
               
               Cow position:chr11:63165465-63165670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 66

               
               
               Conread position:233-442
               
               
               Cow position:chr11:6006495-6006282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):172, 87

               
               
               Conread position:233-442
               
               
               Cow position:chr11:67312972-67312756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:233-442
               
               
               Cow position:chr11:77745063-77745276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr11:84977188-84977383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:233-487
               
               
               Cow position:chr11:80556404-80556145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:233-492
               
               
               Cow position:chr11:17721615-17721885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:233-492
               
               
               Cow position:chr11:18852090-18851838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:233-492
               
               
               Cow position:chr11:52297037-52297301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 74

               
               
               Conread position:233-493
               
               
               Cow position:chr11:27565504-27565254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:233-493
               
               
               Cow position:chr11:65826568-65826823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):186, 35

               
               
               Conread position:233-494
               
               
               Cow position:chr11:1625036-1625306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:233-494
               
               
               Cow position:chr11:6202642-6202364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr11:8437504-8437772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:233-494
               
               
               Cow position:chr11:36286890-36286614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:233-494
               
               
               Cow position:chr11:65762399-65762682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:233-496
               
               
               Cow position:chr11:17859967-17860238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:234-351
               
               
               Cow position:chr11:456020-456138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 103

               
               
               Conread position:234-392
               
               
               Cow position:chr11:62102261-62102421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-396
               
               
               Cow position:chr11:42236095-42236259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:234-397
               
               
               Cow position:chr11:19891021-19890861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr11:71192157-71191990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-404
               
               
               Cow position:chr11:37565054-37564888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:234-404
               
               
               Cow position:chr11:54872576-54872745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:234-407
               
               
               Cow position:chr11:1380862-1380687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr11:5176196-5176369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 69

               
               
               Conread position:234-411
               
               
               Cow position:chr11:21590572-21590392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:234-414
               
               
               Cow position:chr11:6319946-6320128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:234-417
               
               
               Cow position:chr11:3720440-3720257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 169

               
               
               Conread position:234-417
               
               
               Cow position:chr11:36092734-36092915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:234-417
               
               
               Cow position:chr11:42155411-42155226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr11:52132636-52132820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:234-417
               
               
               Cow position:chr11:58186057-58185884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-429
               
               
               Cow position:chr11:47412027-47411828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-431
               
               
               Cow position:chr11:63478547-63478364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:234-434
               
               
               Cow position:chr11:75749650-75749462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:234-442
               
               
               Cow position:chr11:13500195-13499993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):185, 29

               
               
               Conread position:234-442
               
               
               Cow position:chr11:18699055-18698855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:234-442
               
               
               Cow position:chr11:46427222-46427432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:234-442
               
               
               Cow position:chr11:59862395-59862183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:234-442
               
               
               Cow position:chr11:70458229-70458017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:234-442
               
               
               Cow position:chr11:78820334-78820127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):182, 106

               
               
               Conread position:234-445
               
               
               Cow position:chr11:27907955-27907753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):185, 86

               
               
               Conread position:234-451
               
               
               Cow position:chr11:38639284-38639081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-472
               
               
               Cow position:chr11:30209638-30209877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:234-487
               
               
               Cow position:chr11:83323762-83323496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 225

               
               
               Conread position:234-490
               
               
               Cow position:chr11:84385455-84385714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:234-493
               
               
               Cow position:chr11:55911462-55911716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):174, 187

               
               
               Conread position:234-494
               
               
               Cow position:chr11:3920118-3920384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 152

               
               
               Conread position:234-494
               
               
               Cow position:chr11:17083128-17083393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr11:33286770-33287040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr11:37804367-37804638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr11:42016454-42016715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:234-494
               
               
               Cow position:chr11:69978150-69977893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):185, 29

               
               
               Conread position:234-494
               
               
               Cow position:chr11:74316891-74316630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):182, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr11:81300436-81300692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:234-494
               
               
               Cow position:chr11:83032862-83032599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 78

               
               
               Conread position:235-364
               
               
               Cow position:chr11:60488466-60488333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:235-381
               
               
               Cow position:chr11:2830840-2830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-390
               
               
               Cow position:chr11:44016429-44016272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-391
               
               
               Cow position:chr11:15881236-15881393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:235-391
               
               
               Cow position:chr11:35544270-35544112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr11:36847353-36847194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-397
               
               
               Cow position:chr11:36300400-36300560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:235-397
               
               
               Cow position:chr11:62606602-62606438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:235-398
               
               
               Cow position:chr11:67208433-67208273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:235-399
               
               
               Cow position:chr11:50629454-50629296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:235-399
               
               
               Cow position:chr11:63498947-63499110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr11:37042158-37041984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr11:71303763-71303591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:235-408
               
               
               Cow position:chr11:5231463-5231635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:235-410
               
               
               Cow position:chr11:41980020-41980196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:235-411
               
               
               Cow position:chr11:25791509-25791687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr11:36136292-36136117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:235-416
               
               
               Cow position:chr11:26442319-26442502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:235-417
               
               
               Cow position:chr11:25604137-25603949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 132

               
               
               Conread position:235-417
               
               
               Cow position:chr11:71854098-71854277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:235-417
               
               
               Cow position:chr11:79666078-79666260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:235-417
               
               
               Cow position:chr11:86895556-86895378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:235-418
               
               
               Cow position:chr11:41278371-41278186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-422
               
               
               Cow position:chr11:30322310-30322496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:235-424
               
               
               Cow position:chr11:46314197-46314004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:235-430
               
               
               Cow position:chr11:56115121-56114926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:235-435
               
               
               Cow position:chr11:81041778-81041987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:235-438
               
               
               Cow position:chr11:10563189-10562988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:235-442
               
               
               Cow position:chr11:53817038-53816833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:235-442
               
               
               Cow position:chr11:62889708-62889918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:235-442
               
               
               Cow position:chr11:63065836-63065631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:235-443
               
               
               Cow position:chr11:1932304-1932517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:235-444
               
               
               Cow position:chr11:15369573-15369361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:235-466
               
               
               Cow position:chr11:47310800-47311030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:235-472
               
               
               Cow position:chr11:75285572-75285821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:235-479
               
               
               Cow position:chr11:5433450-5433206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:235-479
               
               
               Cow position:chr11:77758577-77758826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:235-480
               
               
               Cow position:chr11:42884601-42884853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-492
               
               
               Cow position:chr11:38334705-38334444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):126, 57

               
               
               Conread position:235-493
               
               
               Cow position:chr11:82740676-82740426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr11:3715423-3715153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr11:5218979-5219232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:235-494
               
               
               Cow position:chr11:5961491-5961229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:235-494
               
               
               Cow position:chr11:6233694-6233962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr11:13592923-13592654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:235-494
               
               
               Cow position:chr11:17676191-17676453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):125, 78

               
               
               Conread position:235-494
               
               
               Cow position:chr11:19591812-19592073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr11:32055001-32055265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:235-494
               
               
               Cow position:chr11:35153636-35153907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:235-494
               
               
               Cow position:chr11:35347567-35347835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr11:35580445-35580175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:235-494
               
               
               Cow position:chr11:53773867-53773595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr11:55744653-55744389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 234

               
               
               Conread position:235-494
               
               
               Cow position:chr11:65157221-65157493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):94, 80

               
               
               Conread position:235-494
               
               
               Cow position:chr11:68913327-68913060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:235-494
               
               
               Cow position:chr11:81167847-81168114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:235-494
               
               
               Cow position:chr11:83033046-83033319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:235-495
               
               
               Cow position:chr11:3740148-3739869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:236-440
               
               
               Cow position:chr11:25783898-25783690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:236-440
               
               
               Cow position:chr11:53717624-53717829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:236-442
               
               
               Cow position:chr11:56311417-56311620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:236-443
               
               
               Cow position:chr11:64409149-64408951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 82

               
               
               Conread position:236-494
               
               
               Cow position:chr11:24602141-24601891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:236-494
               
               
               Cow position:chr11:73573830-73573564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:237-492
               
               
               Cow position:chr11:45435257-45435000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:237-494
               
               
               Cow position:chr11:42296445-42296700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:238-406
               
               
               Cow position:chr11:72401557-72401720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:238-410
               
               
               Cow position:chr11:29782338-29782174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:238-414
               
               
               Cow position:chr11:66104212-66104391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:238-490
               
               
               Cow position:chr11:63435703-63435439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):75, 165

               
               
               Conread position:238-494
               
               
               Cow position:chr11:46999167-46998902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 193

               
               
               Conread position:238-496
               
               
               Cow position:chr11:17036351-17036614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):181, 77

               
               
               Conread position:239-364
               
               
               Cow position:chr11:57873988-57873863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-377
               
               
               Cow position:chr11:64022930-64023063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr11:21468863-21468694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):167, 29

               
               
               Conread position:239-442
               
               
               Cow position:chr11:72292741-72292528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:239-453
               
               
               Cow position:chr11:37424978-37425186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):180, 29

               
               
               Conread position:239-494
               
               
               Cow position:chr11:8462186-8461933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:239-494
               
               
               Cow position:chr11:15285444-15285699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):180, 46

               
               
               Conread position:239-494
               
               
               Cow position:chr11:18910703-18910961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:239-494
               
               
               Cow position:chr11:24599219-24599472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:239-494
               
               
               Cow position:chr11:45646418-45646677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:239-494
               
               
               Cow position:chr11:45872129-45872399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:240-321
               
               
               Cow position:chr11:50197333-50197414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:73
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-376
               
               
               Cow position:chr11:6784384-6784251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-379
               
               
               Cow position:chr11:4602330-4602192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:240-380
               
               
               Cow position:chr11:26823291-26823148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:240-382
               
               
               Cow position:chr11:24551570-24551427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:240-385
               
               
               Cow position:chr11:12768575-12768432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:240-389
               
               
               Cow position:chr11:9691188-9691034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:240-389
               
               
               Cow position:chr11:33271608-33271460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 79

               
               
               Conread position:240-392
               
               
               Cow position:chr11:5559462-5559308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:240-397
               
               
               Cow position:chr11:8520993-8520846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:240-397
               
               
               Cow position:chr11:37099993-37100151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 106

               
               
               Conread position:240-397
               
               
               Cow position:chr11:83028171-83028015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:240-398
               
               
               Cow position:chr11:30857214-30857058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):115, 61

               
               
               Conread position:240-399
               
               
               Cow position:chr11:43965711-43965858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:240-406
               
               
               Cow position:chr11:47110435-47110261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr11:63407873-63407708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:240-407
               
               
               Cow position:chr11:4621256-4621419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr11:13684542-13684701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr11:6423219-6423391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):68, 82

               
               
               Conread position:240-413
               
               
               Cow position:chr11:21736132-21736293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr11:76248225-76248055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:240-414
               
               
               Cow position:chr11:7500928-7500753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:240-414
               
               
               Cow position:chr11:33374145-33373970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:240-414
               
               
               Cow position:chr11:77227709-77227543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:240-414
               
               
               Cow position:chr11:81065871-81066045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 105

               
               
               Conread position:240-417
               
               
               Cow position:chr11:9836276-9836455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr11:12555125-12555304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:240-417
               
               
               Cow position:chr11:18119681-18119503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:240-417
               
               
               Cow position:chr11:42084494-42084674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:240-417
               
               
               Cow position:chr11:87171897-87172075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 61

               
               
               Conread position:240-424
               
               
               Cow position:chr11:21830032-21830216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:240-431
               
               
               Cow position:chr11:62620555-62620363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr11:10956695-10956897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:240-442
               
               
               Cow position:chr11:15382316-15382527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr11:18447322-18447516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-442
               
               
               Cow position:chr11:19247026-19247223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:240-442
               
               
               Cow position:chr11:35351854-35352063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 129

               
               
               Conread position:240-442
               
               
               Cow position:chr11:38236424-38236227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:240-442
               
               
               Cow position:chr11:48660109-48659910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 80

               
               
               Conread position:240-444
               
               
               Cow position:chr11:46747680-46747887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:240-448
               
               
               Cow position:chr11:30986815-30986612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-457
               
               
               Cow position:chr11:21886009-21885790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:240-467
               
               
               Cow position:chr11:30964522-30964299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 125

               
               
               Conread position:240-468
               
               
               Cow position:chr11:32126795-32126553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:240-468
               
               
               Cow position:chr11:80639373-80639604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):176, 41

               
               
               Conread position:240-469
               
               
               Cow position:chr11:20205679-20205905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-482
               
               
               Cow position:chr11:78380890-78381129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):205, 80

               
               
               Conread position:240-490
               
               
               Cow position:chr11:41215912-41215664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:240-490
               
               
               Cow position:chr11:75479844-75480106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):70, 7

               
               
               Conread position:240-493
               
               
               Cow position:chr11:5328964-5328708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-493
               
               
               Cow position:chr11:23407639-23407380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-493
               
               
               Cow position:chr11:30830444-30830697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:240-493
               
               
               Cow position:chr11:63470037-63469793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:240-493
               
               
               Cow position:chr11:81134990-81135248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):82, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr11:2917414-2917668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:240-494
               
               
               Cow position:chr11:4199453-4199190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 161

               
               
               Conread position:240-494
               
               
               Cow position:chr11:5486195-5485928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:240-494
               
               
               Cow position:chr11:6399885-6400152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 63

               
               
               Conread position:240-494
               
               
               Cow position:chr11:19500625-19500868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):203, 72

               
               
               Conread position:240-494
               
               
               Cow position:chr11:23271827-23272085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:240-494
               
               
               Cow position:chr11:32254037-32254300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:240-494
               
               
               Cow position:chr11:33409087-33409343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr11:39060426-39060682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr11:44032185-44031919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):176, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr11:48544615-48544349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr11:55494843-55494595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:240-494
               
               
               Cow position:chr11:62742469-62742716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):228, 71

               
               
               Conread position:240-494
               
               
               Cow position:chr11:62789306-62789046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 82

               
               
               Conread position:240-494
               
               
               Cow position:chr11:62812773-62813034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr11:64009904-64009637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 7

               
               
               Conread position:240-494
               
               
               Cow position:chr11:67615073-67615329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:241-388
               
               
               Cow position:chr11:1842135-1841994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-395
               
               
               Cow position:chr11:53486982-53487130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:241-396
               
               
               Cow position:chr11:63034992-63035150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:241-399
               
               
               Cow position:chr11:63475493-63475653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:241-407
               
               
               Cow position:chr11:35980963-35981130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:241-422
               
               
               Cow position:chr11:26535962-26535784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:241-429
               
               
               Cow position:chr11:6255831-6256014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:241-442
               
               
               Cow position:chr11:25119758-25119955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:241-442
               
               
               Cow position:chr11:30842847-30843043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:241-442
               
               
               Cow position:chr11:68883898-68883694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:241-442
               
               
               Cow position:chr11:78544463-78544259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:241-492
               
               
               Cow position:chr11:29960470-29960215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:241-494
               
               
               Cow position:chr11:6245499-6245240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 127

               
               
               Conread position:241-494
               
               
               Cow position:chr11:71390396-71390646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:242-387
               
               
               Cow position:chr11:85985872-85986018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:242-404
               
               
               Cow position:chr11:53651817-53651655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:242-414
               
               
               Cow position:chr11:56676102-56675929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:242-414
               
               
               Cow position:chr11:66939414-66939588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 121

               
               
               Conread position:242-440
               
               
               Cow position:chr11:68660437-68660633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:242-442
               
               
               Cow position:chr11:29786316-29786523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr11:5201469-5201728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:242-494
               
               
               Cow position:chr11:64029090-64029344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:243-417
               
               
               Cow position:chr11:8683902-8684078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:243-442
               
               
               Cow position:chr11:32436522-32436310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 139

               
               
               Conread position:243-494
               
               
               Cow position:chr11:9221546-9221810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-399
               
               
               Cow position:chr11:38992-38831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:244-494
               
               
               Cow position:chr11:26274791-26275039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):175, 52

               
               
               Conread position:245-411
               
               
               Cow position:chr11:15278844-15279005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 23

               
               
               Conread position:245-417
               
               
               Cow position:chr11:60486242-60486417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:245-442
               
               
               Cow position:chr11:35109366-35109562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:245-494
               
               
               Cow position:chr11:19487305-19487564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:246-414
               
               
               Cow position:chr11:49207884-49207715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):76, 148

               
               
               Conread position:247-404
               
               
               Cow position:chr11:17309572-17309417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:247-414
               
               
               Cow position:chr11:29677379-29677211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:247-414
               
               
               Cow position:chr11:30654820-30654660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:247-415
               
               
               Cow position:chr11:26343274-26343105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:247-415
               
               
               Cow position:chr11:63975303-63975133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:247-417
               
               
               Cow position:chr11:21173265-21173436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr11:60720282-60720454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:247-427
               
               
               Cow position:chr11:36920406-36920587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:247-442
               
               
               Cow position:chr11:57608294-57608480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 39

               
               
               Conread position:247-444
               
               
               Cow position:chr11:13863930-13864131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:247-444
               
               
               Cow position:chr11:34644830-34644629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:247-490
               
               
               Cow position:chr11:8544845-8545091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:247-493
               
               
               Cow position:chr11:48474881-48474622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:247-494
               
               
               Cow position:chr11:50472490-50472235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:247-494
               
               
               Cow position:chr11:84228551-84228795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:248-411
               
               
               Cow position:chr11:2836031-2835866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:248-414
               
               
               Cow position:chr11:5467252-5467086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:248-414
               
               
               Cow position:chr11:30600019-30600187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:248-417
               
               
               Cow position:chr11:31326191-31326008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:248-417
               
               
               Cow position:chr11:63202078-63202248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:248-430
               
               
               Cow position:chr11:35149573-35149386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 117

               
               
               Conread position:248-440
               
               
               Cow position:chr11:34467733-34467548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr11:30894832-30895028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:248-477
               
               
               Cow position:chr11:19606765-19606512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr11:8524947-8525193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:248-494
               
               
               Cow position:chr11:28993577-28993814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:248-494
               
               
               Cow position:chr11:73353896-73354136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):161, 67

               
               
               Conread position:248-494
               
               
               Cow position:chr11:77319583-77319330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:249-385
               
               
               Cow position:chr11:33289299-33289429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:249-494
               
               
               Cow position:chr11:47772212-47772475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:250-385
               
               
               Cow position:chr11:34144750-34144891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:250-399
               
               
               Cow position:chr11:7617039-7617187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):136, 57

               
               
               Conread position:250-406
               
               
               Cow position:chr11:39854853-39855005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:250-467
               
               
               Cow position:chr11:32777843-32777631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:251-494
               
               
               Cow position:chr11:35960813-35961052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:252-404
               
               
               Cow position:chr11:78672838-78672685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-494
               
               
               Cow position:chr11:83066659-83066412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 176

               
               
               Conread position:253-450
               
               
               Cow position:chr11:81406001-81406202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):65, 79

               
               
               Conread position:255-491
               
               
               Cow position:chr11:31875258-31875011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:259-439
               
               
               Cow position:chr11:73977141-73977325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:259-494
               
               
               Cow position:chr11:30370262-30370025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):164, 49

               
               
               Conread position:259-496
               
               
               Cow position:chr11:39499515-39499269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:260-399
               
               
               Cow position:chr11:62081813-62081948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:261-407
               
               
               Cow position:chr11:7651907-7652055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:261-442
               
               
               Cow position:chr11:58927731-58927559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:262-438
               
               
               Cow position:chr11:9699047-9698882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:263-397
               
               
               Cow position:chr11:35140066-35139930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:264-491
               
               
               Cow position:chr11:87155676-87155440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 151

               
               
               Conread position:264-494
               
               
               Cow position:chr11:17493638-17493394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:265-493
               
               
               Cow position:chr11:73512288-73512518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:266-475
               
               
               Cow position:chr11:34136394-34136187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:266-493
               
               
               Cow position:chr11:11469500-11469719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):153, 51

               
               
               Conread position:267-407
               
               
               Cow position:chr11:17807809-17807951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:267-491
               
               
               Cow position:chr11:31410728-31410963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):152, 46

               
               
               Conread position:268-426
               
               
               Cow position:chr11:68206695-68206853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):129, 46

               
               
               Conread position:268-494
               
               
               Cow position:chr11:56187758-56187535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:271-494
               
               
               Cow position:chr11:3393066-3393294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):148, 43

               
               
               Conread position:274-397
               
               
               Cow position:chr11:27688246-27688368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr11:37490432-37490574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:274-494
               
               
               Cow position:chr11:372560-372779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:276-494
               
               
               Cow position:chr11:34121341-34121112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 69

               
               
               Conread position:281-417
               
               
               Cow position:chr11:61178490-61178359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:281-430
               
               
               Cow position:chr11:7924280-7924427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:281-494
               
               
               Cow position:chr11:34113400-34113181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:281-494
               
               
               Cow position:chr11:67804883-67804671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:281-496
               
               
               Cow position:chr11:18706691-18706900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:283-494
               
               
               Cow position:chr11:59873059-59872849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:284-399
               
               
               Cow position:chr11:6413564-6413679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:287-494
               
               
               Cow position:chr11:23586773-23586553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:292-411
               
               
               Cow position:chr11:30306555-30306437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:292-424
               
               
               Cow position:chr11:11523330-11523464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:292-494
               
               
               Cow position:chr11:69119420-69119209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:298-492
               
               
               Cow position:chr11:30355178-30354977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:298-494
               
               
               Cow position:chr11:33341023-33341229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:301-494
               
               
               Cow position:chr11:48496477-48496676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 16

               
               
               Conread position:302-417
               
               
               Cow position:chr11:46452252-46452137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-418
               
               
               Cow position:chr11:35860697-35860583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr11:56290628-56290487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:302-452
               
               
               Cow position:chr11:60470082-60470227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):146, 37

               
               
               Conread position:302-492
               
               
               Cow position:chr11:2092444-2092253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):133, 42

               
               
               Conread position:302-493
               
               
               Cow position:chr11:28644204-28644003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr11:30955117-30954917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr11:48272317-48272115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr11:54334445-54334251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr11:59702606-59702402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:302-494
               
               
               Cow position:chr11:69076025-69075826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:302-494
               
               
               Cow position:chr11:73924444-73924644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:302-496
               
               
               Cow position:chr11:25387184-25386980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:303-431
               
               
               Cow position:chr11:70741254-70741129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):116, 24

               
               
               Conread position:303-494
               
               
               Cow position:chr11:1070973-1071175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:303-494
               
               
               Cow position:chr11:16906935-16907126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:303-494
               
               
               Cow position:chr11:35803250-35803051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:305-451
               
               
               Cow position:chr11:79018945-79019093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr11:44234469-44234270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr11:44636641-44636840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:305-494
               
               
               Cow position:chr11:62778557-62778364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:305-495
               
               
               Cow position:chr11:26845481-26845678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:306-494
               
               
               Cow position:chr11:40478740-40478932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr11:36658714-36658903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:307-494
               
               
               Cow position:chr11:40573224-40573415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:307-494
               
               
               Cow position:chr11:83230289-83230479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:312-467
               
               
               Cow position:chr11:62609711-62609551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:316-494
               
               
               Cow position:chr11:32690868-32691047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 129

               
               
               Conread position:318-492
               
               
               Cow position:chr11:43898239-43898059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:324-442
               
               
               Cow position:chr11:29946819-29946938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr11:13075717-13075882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr11:65767294-65767115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 149

               
               
               Conread position:325-494
               
               
               Cow position:chr11:50778461-50778291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 115

               
               
               Conread position:328-492
               
               
               Cow position:chr11:53553306-53553146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:329-492
               
               
               Cow position:chr11:28168333-28168505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr11:44036809-44036641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):112, 71

               
               
               Conread position:331-492
               
               
               Cow position:chr11:36987037-36986875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:332-494
               
               
               Cow position:chr11:8428598-8428428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:332-494
               
               
               Cow position:chr11:23128453-23128625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:333-494
               
               
               Cow position:chr11:5549-5383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr11:84490415-84490571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:349-495
               
               
               Cow position:chr11:69392632-69392478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:351-494
               
               
               Cow position:chr11:54218782-54218634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:358-493
               
               
               Cow position:chr11:36914666-36914802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:358-494
               
               
               Cow position:chr11:24937726-24937581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:358-494
               
               
               Cow position:chr11:67550317-67550456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:204-332
               
               
               Cow position:chr12:36012418-36012548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:204-440
               
               
               Cow position:chr12:2734722-2734951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):215, 10

               
               
               Conread position:209-442
               
               
               Cow position:chr12:37008523-37008748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):210, 29

               
               
               Conread position:212-422
               
               
               Cow position:chr12:30476697-30476480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:213-493
               
               
               Cow position:chr12:14223168-14222874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:216-407
               
               
               Cow position:chr12:43619464-43619271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:218-390
               
               
               Cow position:chr12:41420678-41420858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:219-394
               
               
               Cow position:chr12:19061330-19061503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):94, 105

               
               
               Conread position:219-397
               
               
               Cow position:chr12:42562075-42561902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:220-412
               
               
               Cow position:chr12:32808441-32808625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):137, 7

               
               
               Conread position:221-410
               
               
               Cow position:chr12:45152468-45152280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:221-493
               
               
               Cow position:chr12:31269335-31269048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:222-376
               
               
               Cow position:chr12:9055241-9055397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:222-397
               
               
               Cow position:chr12:29762068-29762249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:222-411
               
               
               Cow position:chr12:28598444-28598250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:222-447
               
               
               Cow position:chr12:32051695-32051460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:222-490
               
               
               Cow position:chr12:19697569-19697303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):162, 49

               
               
               Conread position:222-493
               
               
               Cow position:chr12:48415345-48415618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):203, 55

               
               
               Conread position:222-494
               
               
               Cow position:chr12:37771034-37770773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):189, 36

               
               
               Conread position:223-354
               
               
               Cow position:chr12:11676510-11676377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:223-399
               
               
               Cow position:chr12:6206511-6206330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:223-442
               
               
               Cow position:chr12:7960414-7960627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):193, 18

               
               
               Conread position:223-442
               
               
               Cow position:chr12:40910111-40910334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 122

               
               
               Conread position:223-443
               
               
               Cow position:chr12:23836509-23836285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:223-487
               
               
               Cow position:chr12:16605494-16605757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:223-494
               
               
               Cow position:chr12:6241999-6242278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:223-494
               
               
               Cow position:chr12:30590943-30590664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:223-494
               
               
               Cow position:chr12:38774071-38774342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):196, 94

               
               
               Conread position:224-336
               
               
               Cow position:chr12:26927745-26927858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:224-490
               
               
               Cow position:chr12:5714790-5714529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):195, 17

               
               
               Conread position:224-494
               
               
               Cow position:chr12:33129427-33129159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):188, 99

               
               
               Conread position:225-414
               
               
               Cow position:chr12:45126688-45126862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:225-442
               
               
               Cow position:chr12:43855061-43854849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):195, 16

               
               
               Conread position:225-444
               
               
               Cow position:chr12:22291318-22291533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):136, 22

               
               
               Conread position:225-493
               
               
               Cow position:chr12:29674967-29675241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:225-494
               
               
               Cow position:chr12:9914953-9914686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):194, 54

               
               
               Conread position:225-494
               
               
               Cow position:chr12:25917108-25917372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:225-494
               
               
               Cow position:chr12:35770852-35771122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):184, 48

               
               
               Conread position:226-485
               
               
               Cow position:chr12:31883517-31883250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):84, 169

               
               
               Conread position:226-492
               
               
               Cow position:chr12:11587940-11587671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):193, 44

               
               
               Conread position:226-494
               
               
               Cow position:chr12:15050454-15050720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:226-494
               
               
               Cow position:chr12:19258447-19258176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:226-494
               
               
               Cow position:chr12:24663294-24663013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:227-367
               
               
               Cow position:chr12:18551300-18551166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:227-369
               
               
               Cow position:chr12:17332044-17331897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 145

               
               
               Conread position:227-373
               
               
               Cow position:chr12:10611827-10611684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-374
               
               
               Cow position:chr12:43930921-43930773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:227-379
               
               
               Cow position:chr12:38165371-38165522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 87

               
               
               Conread position:227-381
               
               
               Cow position:chr12:34473438-34473608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr12:37420334-37420490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:227-385
               
               
               Cow position:chr12:3579654-3579498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-386
               
               
               Cow position:chr12:37718598-37718759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:227-388
               
               
               Cow position:chr12:29195472-29195305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:227-389
               
               
               Cow position:chr12:2707922-2708077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):157, 34

               
               
               Conread position:227-389
               
               
               Cow position:chr12:13995624-13995789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr12:4109216-4109051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:227-394
               
               
               Cow position:chr12:2835575-2835407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:227-397
               
               
               Cow position:chr12:34878008-34877831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:227-398
               
               
               Cow position:chr12:14987969-14987799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr12:17701866-17702035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 75

               
               
               Conread position:227-406
               
               
               Cow position:chr12:4007917-4008095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:227-406
               
               
               Cow position:chr12:42951521-42951696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:227-414
               
               
               Cow position:chr12:17273739-17273549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:227-414
               
               
               Cow position:chr12:25027587-25027778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:227-416
               
               
               Cow position:chr12:46714547-46714353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:227-417
               
               
               Cow position:chr12:11860871-11860680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-417
               
               
               Cow position:chr12:19007768-19007952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):182, 73

               
               
               Conread position:227-417
               
               
               Cow position:chr12:26749780-26749971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:227-417
               
               
               Cow position:chr12:38009914-38010106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:227-430
               
               
               Cow position:chr12:17250674-17250482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):171, 75

               
               
               Conread position:227-431
               
               
               Cow position:chr12:23714842-23714641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:227-442
               
               
               Cow position:chr12:6187940-6188159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:227-442
               
               
               Cow position:chr12:6241493-6241274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr12:9130073-9129864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:227-442
               
               
               Cow position:chr12:10827956-10827740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):86, 98

               
               
               Conread position:227-442
               
               
               Cow position:chr12:34161574-34161369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:227-442
               
               
               Cow position:chr12:42163212-42163001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 70

               
               
               Conread position:227-461
               
               
               Cow position:chr12:3586285-3586057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:227-490
               
               
               Cow position:chr12:7110378-7110101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-492
               
               
               Cow position:chr12:30745886-30745614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):133, 93

               
               
               Conread position:227-493
               
               
               Cow position:chr12:42967165-42966897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):82, 72

               
               
               Conread position:227-494
               
               
               Cow position:chr12:3371381-3371647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):192, 21

               
               
               Conread position:227-494
               
               
               Cow position:chr12:9143556-9143284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:227-494
               
               
               Cow position:chr12:12301097-12300818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):89, 229

               
               
               Conread position:227-494
               
               
               Cow position:chr12:15703325-15703606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:227-494
               
               
               Cow position:chr12:30170822-30170565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 84

               
               
               Conread position:227-494
               
               
               Cow position:chr12:37169779-37170046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:227-494
               
               
               Cow position:chr12:42879869-42879590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:228-376
               
               
               Cow position:chr12:39431738-39431595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:228-387
               
               
               Cow position:chr12:8711151-8710994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:228-390
               
               
               Cow position:chr12:20637367-20637528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:228-411
               
               
               Cow position:chr12:20355393-20355202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr12:26146997-26147215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr12:30210639-30210438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):191, 80

               
               
               Conread position:228-493
               
               
               Cow position:chr12:20776760-20777025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:228-494
               
               
               Cow position:chr12:12637016-12637288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:228-494
               
               
               Cow position:chr12:23939390-23939120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:228-494
               
               
               Cow position:chr12:39486598-39486322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 118

               
               
               Conread position:229-392
               
               
               Cow position:chr12:24532454-24532619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:229-414
               
               
               Cow position:chr12:21903948-21903765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:229-417
               
               
               Cow position:chr12:31602654-31602841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:229-421
               
               
               Cow position:chr12:38679214-38679026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:229-442
               
               
               Cow position:chr12:29895578-29895361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 209

               
               
               Conread position:229-442
               
               
               Cow position:chr12:42180959-42181174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:229-494
               
               
               Cow position:chr12:33976371-33976097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:229-494
               
               
               Cow position:chr12:41084213-41083964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):190, 38

               
               
               Conread position:229-494
               
               
               Cow position:chr12:46120649-46120933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:230-316
               
               
               Cow position:chr12:29131756-29131670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-362
               
               
               Cow position:chr12:44211322-44211188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-365
               
               
               Cow position:chr12:27421619-27421486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-387
               
               
               Cow position:chr12:45023615-45023765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr12:28010504-28010664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr12:37702819-37702979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr12:46106956-46106791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 135

               
               
               Conread position:230-398
               
               
               Cow position:chr12:38031976-38032140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr12:20654314-20654479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:230-406
               
               
               Cow position:chr12:1952638-1952810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr12:17108321-17108151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr12:43974459-43974281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:230-407
               
               
               Cow position:chr12:30919601-30919416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-410
               
               
               Cow position:chr12:583337-583522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr12:5135399-5135217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr12:44013422-44013613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):82, 54

               
               
               Conread position:230-414
               
               
               Cow position:chr12:45782390-45782210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr12:20404318-20404131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 78

               
               
               Conread position:230-416
               
               
               Cow position:chr12:30042895-30042707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr12:37123819-37123632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr12:11272662-11272845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr12:31926022-31925833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr12:33298351-33298163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr12:35137088-35136900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 185

               
               
               Conread position:230-417
               
               
               Cow position:chr12:36119135-36118946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr12:42630868-42631057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr12:43474925-43474741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:230-418
               
               
               Cow position:chr12:43427632-43427822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-422
               
               
               Cow position:chr12:22752799-22752601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:230-424
               
               
               Cow position:chr12:22323100-22323301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:230-426
               
               
               Cow position:chr12:39149882-39150081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-427
               
               
               Cow position:chr12:17928914-17929103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):189, 77

               
               
               Conread position:230-430
               
               
               Cow position:chr12:43551049-43551255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-431
               
               
               Cow position:chr12:6480814-6480606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr12:4720111-4719902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr12:15389237-15389026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):189, 93

               
               
               Conread position:230-442
               
               
               Cow position:chr12:16056688-16056903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr12:29966272-29966062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 172

               
               
               Conread position:230-442
               
               
               Cow position:chr12:33625236-33625451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr12:34028958-34029172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:230-442
               
               
               Cow position:chr12:35368811-35368597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:230-442
               
               
               Cow position:chr12:38154901-38155116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-466
               
               
               Cow position:chr12:4594666-4594434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):136, 51

               
               
               Conread position:230-481
               
               
               Cow position:chr12:5554170-5554426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:230-491
               
               
               Cow position:chr12:42749610-42749340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:230-491
               
               
               Cow position:chr12:43789193-43788937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-492
               
               
               Cow position:chr12:7884513-7884783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr12:18103450-18103713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:230-493
               
               
               Cow position:chr12:23917006-23916741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):193, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr12:4596640-4596362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr12:8943047-8943323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 259

               
               
               Conread position:230-494
               
               
               Cow position:chr12:9766714-9766983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr12:13988541-13988268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr12:15429430-15429700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr12:18518839-18518563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr12:21780330-21780061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:230-494
               
               
               Cow position:chr12:26783041-26782779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 173

               
               
               Conread position:230-494
               
               
               Cow position:chr12:30806020-30805751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:230-494
               
               
               Cow position:chr12:33851523-33851255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 88

               
               
               Conread position:230-494
               
               
               Cow position:chr12:35310515-35310785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):80, 148

               
               
               Conread position:230-494
               
               
               Cow position:chr12:36790646-36790914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):189, 89

               
               
               Conread position:230-494
               
               
               Cow position:chr12:41658554-41658826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr12:42784474-42784204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:230-494
               
               
               Cow position:chr12:42923944-42924207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-496
               
               
               Cow position:chr12:38851856-38852135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:231-375
               
               
               Cow position:chr12:25299527-25299382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:231-385
               
               
               Cow position:chr12:44892375-44892220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:231-387
               
               
               Cow position:chr12:2804919-2805063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:231-403
               
               
               Cow position:chr12:3454863-3454688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:231-405
               
               
               Cow position:chr12:17254308-17254133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:231-414
               
               
               Cow position:chr12:24639794-24639619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:231-424
               
               
               Cow position:chr12:25456587-25456381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:231-430
               
               
               Cow position:chr12:46144219-46144020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:231-432
               
               
               Cow position:chr12:6958385-6958184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):105, 72

               
               
               Conread position:231-440
               
               
               Cow position:chr12:13911410-13911624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 83

               
               
               Conread position:231-440
               
               
               Cow position:chr12:24181309-24181106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr12:14986913-14986704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:231-442
               
               
               Cow position:chr12:23106105-23105892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr12:24437466-24437680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr12:40157862-40158067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):188, 89

               
               
               Conread position:231-494
               
               
               Cow position:chr12:18021044-18020754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 184

               
               
               Conread position:231-494
               
               
               Cow position:chr12:20479178-20479432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):213, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr12:42286130-42285865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:232-330
               
               
               Cow position:chr12:6139255-6139354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-338
               
               
               Cow position:chr12:9791114-9791216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr12:44822447-44822292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-406
               
               
               Cow position:chr12:6666726-6666562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr12:25528397-25528576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr12:31841735-31841550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr12:43583160-43582983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:232-431
               
               
               Cow position:chr12:2964211-2964016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):187, 76

               
               
               Conread position:232-435
               
               
               Cow position:chr12:29180839-29180635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):178, 86

               
               
               Conread position:232-441
               
               
               Cow position:chr12:22859615-22859423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-444
               
               
               Cow position:chr12:48579000-48578796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):187, 79

               
               
               Conread position:232-490
               
               
               Cow position:chr12:25804980-25805230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:232-494
               
               
               Cow position:chr12:7902640-7902906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr12:18123831-18123577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:232-494
               
               
               Cow position:chr12:25561531-25561267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr12:36544480-36544753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr12:44202828-44203092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:232-494
               
               
               Cow position:chr12:44622525-44622251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 178

               
               
               Conread position:233-315
               
               
               Cow position:chr12:45712817-45712899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:74
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-332
               
               
               Cow position:chr12:7515039-7514938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:233-375
               
               
               Cow position:chr12:14360808-14360665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:233-376
               
               
               Cow position:chr12:5247074-5246932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-382
               
               
               Cow position:chr12:19056840-19056688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 66

               
               
               Conread position:233-407
               
               
               Cow position:chr12:47267144-47267318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:233-414
               
               
               Cow position:chr12:19272526-19272705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:233-414
               
               
               Cow position:chr12:35664121-35663947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:233-437
               
               
               Cow position:chr12:28651287-28651071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:233-438
               
               
               Cow position:chr12:25823064-25823268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:233-441
               
               
               Cow position:chr12:40881759-40881954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):186, 75

               
               
               Conread position:233-442
               
               
               Cow position:chr12:4769083-4768881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):186, 83

               
               
               Conread position:233-442
               
               
               Cow position:chr12:11836392-11836189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):186, 32

               
               
               Conread position:233-442
               
               
               Cow position:chr12:45069219-45069432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:233-458
               
               
               Cow position:chr12:26868652-26868874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:233-486
               
               
               Cow position:chr12:39591466-39591740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:233-492
               
               
               Cow position:chr12:19502250-19502525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 255

               
               
               Conread position:233-494
               
               
               Cow position:chr12:17031773-17031512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:233-494
               
               
               Cow position:chr12:35240939-35241206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:233-494
               
               
               Cow position:chr12:47929355-47929110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):186, 34

               
               
               Conread position:233-496
               
               
               Cow position:chr12:41159745-41159484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:234-349
               
               
               Cow position:chr12:11168029-11167915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:234-389
               
               
               Cow position:chr12:27663828-27663985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:234-398
               
               
               Cow position:chr12:16386293-16386457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:234-406
               
               
               Cow position:chr12:12699475-12699649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr12:9866598-9866783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr12:24397002-24397182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:234-417
               
               
               Cow position:chr12:26356545-26356730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr12:42160394-42160578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:234-438
               
               
               Cow position:chr12:27802896-27803091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:234-442
               
               
               Cow position:chr12:35469288-35469492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):177, 80

               
               
               Conread position:234-468
               
               
               Cow position:chr12:6688048-6687824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:234-477
               
               
               Cow position:chr12:22469685-22469439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:234-494
               
               
               Cow position:chr12:11057029-11056771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):145, 34

               
               
               Conread position:234-494
               
               
               Cow position:chr12:16670428-16670162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:234-494
               
               
               Cow position:chr12:22485976-22485715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):54, 191

               
               
               Conread position:234-494
               
               
               Cow position:chr12:22515575-22515838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):185, 74

               
               
               Conread position:234-494
               
               
               Cow position:chr12:25193204-25192947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:234-494
               
               
               Cow position:chr12:31948274-31948015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:234-494
               
               
               Cow position:chr12:38126358-38126630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):78, 245

               
               
               Conread position:235-354
               
               
               Cow position:chr12:6719552-6719431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-380
               
               
               Cow position:chr12:39738135-39738281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:235-397
               
               
               Cow position:chr12:1089228-1089392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-397
               
               
               Cow position:chr12:9482140-9482304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:235-397
               
               
               Cow position:chr12:14396629-14396784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:235-397
               
               
               Cow position:chr12:41684666-41684508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:235-398
               
               
               Cow position:chr12:6427061-6426896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:235-399
               
               
               Cow position:chr12:25280340-25280503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:235-411
               
               
               Cow position:chr12:27192204-27192377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:235-414
               
               
               Cow position:chr12:22341421-22341230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:235-415
               
               
               Cow position:chr12:41316948-41317130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr12:22048086-22047905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:235-417
               
               
               Cow position:chr12:24023649-24023821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr12:38343713-38343531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 111

               
               
               Conread position:235-430
               
               
               Cow position:chr12:41776258-41776065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:235-440
               
               
               Cow position:chr12:1889418-1889621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):176, 44

               
               
               Conread position:235-442
               
               
               Cow position:chr12:18563324-18563118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):181, 97

               
               
               Conread position:235-442
               
               
               Cow position:chr12:45001909-45002112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:235-479
               
               
               Cow position:chr12:17882017-17881773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):184, 63

               
               
               Conread position:235-480
               
               
               Cow position:chr12:27176800-27176545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:235-494
               
               
               Cow position:chr12:4341573-4341843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 240

               
               
               Conread position:235-494
               
               
               Cow position:chr12:10942456-10942182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:235-494
               
               
               Cow position:chr12:15089678-15089410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):184, 140

               
               
               Conread position:235-494
               
               
               Cow position:chr12:16493193-16493463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:235-494
               
               
               Cow position:chr12:42282677-42282936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:235-494
               
               
               Cow position:chr12:42602075-42602345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:236-375
               
               
               Cow position:chr12:42350328-42350464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:236-417
               
               
               Cow position:chr12:25417417-25417589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:236-494
               
               
               Cow position:chr12:26217666-26217929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):183, 41

               
               
               Conread position:237-492
               
               
               Cow position:chr12:17269962-17269698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:238-392
               
               
               Cow position:chr12:17744706-17744858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:238-414
               
               
               Cow position:chr12:25814316-25814137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr12:37256177-37255975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 174

               
               
               Conread position:238-450
               
               
               Cow position:chr12:28210118-28210331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:238-490
               
               
               Cow position:chr12:3623850-3623595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):177, 75

               
               
               Conread position:238-492
               
               
               Cow position:chr12:35669313-35669574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:238-494
               
               
               Cow position:chr12:5635293-5635550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 244

               
               
               Conread position:239-379
               
               
               Cow position:chr12:15151718-15151850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-413
               
               
               Cow position:chr12:44861099-44861275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr12:4512293-4512469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):118, 78

               
               
               Conread position:239-430
               
               
               Cow position:chr12:6465366-6465543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:239-442
               
               
               Cow position:chr12:26576050-26575851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):180, 67

               
               
               Conread position:240-338
               
               
               Cow position:chr12:11090601-11090503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-350
               
               
               Cow position:chr12:44597691-44597798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-351
               
               
               Cow position:chr12:19664163-19664277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-380
               
               
               Cow position:chr12:24533657-24533798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:240-382
               
               
               Cow position:chr12:40434886-40435027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:240-386
               
               
               Cow position:chr12:37742458-37742310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:240-389
               
               
               Cow position:chr12:18978843-18978696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:240-390
               
               
               Cow position:chr12:15509614-15509754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr12:4954978-4954819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:240-408
               
               
               Cow position:chr12:4014265-4014443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr12:17490370-17490203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr12:3057246-3057071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:240-414
               
               
               Cow position:chr12:6915384-6915208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-417
               
               
               Cow position:chr12:4182132-4182306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:240-417
               
               
               Cow position:chr12:15414714-15414886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:240-417
               
               
               Cow position:chr12:28131748-28131570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:240-417
               
               
               Cow position:chr12:37480680-37480854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:240-418
               
               
               Cow position:chr12:40309469-40309296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):153, 68

               
               
               Conread position:240-425
               
               
               Cow position:chr12:46065022-46064835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:240-430
               
               
               Cow position:chr12:23446873-23446690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:240-430
               
               
               Cow position:chr12:34532915-34533107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:240-431
               
               
               Cow position:chr12:29316305-29316496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 61

               
               
               Conread position:240-442
               
               
               Cow position:chr12:15496054-15495853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 53

               
               
               Conread position:240-442
               
               
               Cow position:chr12:18513769-18513973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:240-442
               
               
               Cow position:chr12:29057547-29057344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:240-442
               
               
               Cow position:chr12:30946903-30946698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr12:33949057-33948859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):179, 25

               
               
               Conread position:240-442
               
               
               Cow position:chr12:36261851-36261644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr12:45039264-45039062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:240-467
               
               
               Cow position:chr12:17252046-17252272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):203, 59

               
               
               Conread position:240-469
               
               
               Cow position:chr12:10895397-10895627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:240-469
               
               
               Cow position:chr12:12233038-12232810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:240-487
               
               
               Cow position:chr12:19261352-19261097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:240-490
               
               
               Cow position:chr12:24152499-24152238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-490
               
               
               Cow position:chr12:37514124-37514382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:240-491
               
               
               Cow position:chr12:42684778-42685047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 242

               
               
               Conread position:240-492
               
               
               Cow position:chr12:32169703-32169438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:240-493
               
               
               Cow position:chr12:11660084-11659823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 137

               
               
               Conread position:240-493
               
               
               Cow position:chr12:18582842-18583095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):174, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr12:9065716-9065463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 192

               
               
               Conread position:240-494
               
               
               Cow position:chr12:17879148-17879407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr12:18577984-18577735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):128, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr12:22284965-22285222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:240-494
               
               
               Cow position:chr12:28790214-28789941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):102, 124

               
               
               Conread position:240-494
               
               
               Cow position:chr12:36500790-36501049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):152, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr12:39465722-39465473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:240-494
               
               
               Cow position:chr12:44602663-44602401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:241-375
               
               
               Cow position:chr12:29289943-29289809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:241-414
               
               
               Cow position:chr12:15103433-15103257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:241-430
               
               
               Cow position:chr12:26357211-26357404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:241-435
               
               
               Cow position:chr12:28699624-28699814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 103

               
               
               Conread position:241-441
               
               
               Cow position:chr12:1701658-1701849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):178, 60

               
               
               Conread position:241-443
               
               
               Cow position:chr12:45167852-45168065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:241-468
               
               
               Cow position:chr12:3371698-3371922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:241-480
               
               
               Cow position:chr12:27563223-27563468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):178, 26

               
               
               Conread position:241-492
               
               
               Cow position:chr12:17080422-17080157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:241-494
               
               
               Cow position:chr12:6468918-6469166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):178, 6

               
               
               Conread position:241-494
               
               
               Cow position:chr12:13643391-13643130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:241-494
               
               
               Cow position:chr12:25343940-25343679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:241-496
               
               
               Cow position:chr12:24032644-24032392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):178, 20

               
               
               Conread position:242-419
               
               
               Cow position:chr12:39339865-39339690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-485
               
               
               Cow position:chr12:40200851-40200609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:242-494
               
               
               Cow position:chr12:24116218-24116466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):113, 70

               
               
               Conread position:242-494
               
               
               Cow position:chr12:37993566-37993826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:244-431
               
               
               Cow position:chr12:29731464-29731280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:245-442
               
               
               Cow position:chr12:24166797-24166989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:245-482
               
               
               Cow position:chr12:26777042-26777283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):174, 78

               
               
               Conread position:246-369
               
               
               Cow position:chr12:22260755-22260876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:246-417
               
               
               Cow position:chr12:5459403-5459230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:246-417
               
               
               Cow position:chr12:44542414-44542247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:246-463
               
               
               Cow position:chr12:7657182-7657410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:246-468
               
               
               Cow position:chr12:45092591-45092371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:247-494
               
               
               Cow position:chr12:6410586-6410837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:248-387
               
               
               Cow position:chr12:12179212-12179072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 68

               
               
               Conread position:248-396
               
               
               Cow position:chr12:36241238-36241384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr12:38552342-38552175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:248-417
               
               
               Cow position:chr12:41220864-41221028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:248-417
               
               
               Cow position:chr12:42944286-42944115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr12:23574919-23574718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr12:25809583-25809384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:248-442
               
               
               Cow position:chr12:31532260-31532445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):174, 19

               
               
               Conread position:248-490
               
               
               Cow position:chr12:30194842-30194608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):202, 19

               
               
               Conread position:248-492
               
               
               Cow position:chr12:29357916-29358158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):173, 72

               
               
               Conread position:248-494
               
               
               Cow position:chr12:15122474-15122219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 69

               
               
               Conread position:248-494
               
               
               Cow position:chr12:19400667-19400920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):109, 96

               
               
               Conread position:249-414
               
               
               Cow position:chr12:20439114-20439273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:249-494
               
               
               Cow position:chr12:6484276-6484045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):170, 58

               
               
               Conread position:249-494
               
               
               Cow position:chr12:17270685-17270429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:250-383
               
               
               Cow position:chr12:39093020-39093149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:250-442
               
               
               Cow position:chr12:5839514-5839701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:250-487
               
               
               Cow position:chr12:18388140-18388384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:250-494
               
               
               Cow position:chr12:31517036-31517276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):169, 53

               
               
               Conread position:250-494
               
               
               Cow position:chr12:45363509-45363256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:252-417
               
               
               Cow position:chr12:12532346-12532510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:252-443
               
               
               Cow position:chr12:9514513-9514315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:252-489
               
               
               Cow position:chr12:24043011-24043266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 179

               
               
               Conread position:258-494
               
               
               Cow position:chr12:43942612-43942368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:259-494
               
               
               Cow position:chr12:5631746-5631985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:261-442
               
               
               Cow position:chr12:4866950-4866772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):158, 40

               
               
               Conread position:262-493
               
               
               Cow position:chr12:42254804-42254565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:263-414
               
               
               Cow position:chr12:11106444-11106597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:263-483
               
               
               Cow position:chr12:35124025-35123801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 5

               
               
               Conread position:264-424
               
               
               Cow position:chr12:18996944-18996783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:265-406
               
               
               Cow position:chr12:11068546-11068410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:266-417
               
               
               Cow position:chr12:21390005-21389852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:268-442
               
               
               Cow position:chr12:30661820-30661995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:268-494
               
               
               Cow position:chr12:33323365-33323598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:271-442
               
               
               Cow position:chr12:7457414-7457588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 152

               
               
               Conread position:271-490
               
               
               Cow position:chr12:7299335-7299560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:274-494
               
               
               Cow position:chr12:19507760-19507528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:280-494
               
               
               Cow position:chr12:45820246-45820471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):13, 185

               
               
               Conread position:281-397
               
               
               Cow position:chr12:43644051-43644165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:281-397
               
               
               Cow position:chr12:43645382-43645496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:283-491
               
               
               Cow position:chr12:27357495-27357299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 6

               
               
               Conread position:283-494
               
               
               Cow position:chr12:5609395-5609614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:284-397
               
               
               Cow position:chr12:26945723-26945833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:286-429
               
               
               Cow position:chr12:16434768-16434904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:289-494
               
               
               Cow position:chr12:5906166-5905951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:292-435
               
               
               Cow position:chr12:19371784-19371928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:299-496
               
               
               Cow position:chr12:6485117-6485318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):144, 24

               
               
               Conread position:302-439
               
               
               Cow position:chr12:27572146-27572282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:302-442
               
               
               Cow position:chr12:4797393-4797255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:302-465
               
               
               Cow position:chr12:46463976-46464138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:302-487
               
               
               Cow position:chr12:30819341-30819145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-492
               
               
               Cow position:chr12:33319572-33319769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:302-494
               
               
               Cow position:chr12:7000509-7000707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 58

               
               
               Conread position:302-494
               
               
               Cow position:chr12:32715142-32714941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:302-496
               
               
               Cow position:chr12:25445011-25444821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:303-443
               
               
               Cow position:chr12:15260854-15260717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:303-492
               
               
               Cow position:chr12:29770484-29770674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:304-494
               
               
               Cow position:chr12:19274304-19274489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:304-494
               
               
               Cow position:chr12:30753813-30753620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 93

               
               
               Conread position:305-494
               
               
               Cow position:chr12:27037357-27037554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:311-494
               
               
               Cow position:chr12:30605081-30605268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:315-492
               
               
               Cow position:chr12:19691151-19691335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:321-494
               
               
               Cow position:chr12:47193947-47194125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:333-494
               
               
               Cow position:chr12:3092515-3092676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:159-414
               
               
               Cow position:chr13:19177876-19178141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):75, 196

               
               
               Conread position:177-407
               
               
               Cow position:chr13:3149706-3149475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:177-457
               
               
               Cow position:chr13:49823751-49824029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):143, 232

               
               
               Conread position:184-484
               
               
               Cow position:chr13:7149765-7149473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:190-494
               
               
               Cow position:chr13:52934165-52934466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:204-494
               
               
               Cow position:chr13:311190-311480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:206-397
               
               
               Cow position:chr13:4965155-4965336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:208-355
               
               
               Cow position:chr13:19182913-19182766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:209-338
               
               
               Cow position:chr13:7114386-7114258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:211-442
               
               
               Cow position:chr13:20579679-20579900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:212-447
               
               
               Cow position:chr13:54627244-54627485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 160

               
               
               Conread position:213-407
               
               
               Cow position:chr13:1339382-1339185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:213-494
               
               
               Cow position:chr13:24585812-24586093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:215-415
               
               
               Cow position:chr13:55143041-55143237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:215-494
               
               
               Cow position:chr13:20271464-20271177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:216-442
               
               
               Cow position:chr13:18166500-18166724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):203, 25

               
               
               Conread position:216-494
               
               
               Cow position:chr13:25817298-25817578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 22

               
               
               Conread position:219-414
               
               
               Cow position:chr13:10711641-10711452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:219-493
               
               
               Cow position:chr13:34263599-34263320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:219-494
               
               
               Cow position:chr13:29831654-29831387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):200, 8

               
               
               Conread position:220-407
               
               
               Cow position:chr13:14351349-14351538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:220-490
               
               
               Cow position:chr13:23961036-23960767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:221-494
               
               
               Cow position:chr13:8374987-8374722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):195, 19

               
               
               Conread position:222-396
               
               
               Cow position:chr13:56432044-56431880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:222-414
               
               
               Cow position:chr13:27028132-27027935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 136

               
               
               Conread position:222-440
               
               
               Cow position:chr13:52055821-52055602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:222-442
               
               
               Cow position:chr13:25926561-25926782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 124

               
               
               Conread position:223-407
               
               
               Cow position:chr13:43576785-43576970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:223-417
               
               
               Cow position:chr13:16476627-16476823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):86, 100

               
               
               Conread position:223-430
               
               
               Cow position:chr13:31507674-31507464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:223-442
               
               
               Cow position:chr13:37751296-37751075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):80, 198

               
               
               Conread position:223-442
               
               
               Cow position:chr13:52536345-52536557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):174, 72

               
               
               Conread position:224-342
               
               
               Cow position:chr13:27837717-27837600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:224-431
               
               
               Cow position:chr13:21277685-21277486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:224-490
               
               
               Cow position:chr13:14063746-14063473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 96

               
               
               Conread position:224-492
               
               
               Cow position:chr13:47007936-47007679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):192, 16

               
               
               Conread position:225-379
               
               
               Cow position:chr13:28347859-28348011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:225-382
               
               
               Cow position:chr13:45142160-45141991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:225-387
               
               
               Cow position:chr13:29507386-29507553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 125

               
               
               Conread position:225-392
               
               
               Cow position:chr13:17787852-17787682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 123

               
               
               Conread position:225-409
               
               
               Cow position:chr13:8236680-8236873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:225-410
               
               
               Cow position:chr13:5930535-5930349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:225-414
               
               
               Cow position:chr13:3775907-3775718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 81

               
               
               Conread position:225-414
               
               
               Cow position:chr13:59461023-59461207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:225-442
               
               
               Cow position:chr13:21902181-21902384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):187, 16

               
               
               Conread position:225-464
               
               
               Cow position:chr13:7046658-7046885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):171, 15

               
               
               Conread position:225-467
               
               
               Cow position:chr13:56686219-56686447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:225-494
               
               
               Cow position:chr13:2773892-2774177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:225-494
               
               
               Cow position:chr13:13320572-13320844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:225-496
               
               
               Cow position:chr13:51528662-51528391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:226-380
               
               
               Cow position:chr13:3003263-3003404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:226-393
               
               
               Cow position:chr13:14782125-14782284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:226-399
               
               
               Cow position:chr13:714687-714511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:226-494
               
               
               Cow position:chr13:34261012-34261280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 89

               
               
               Conread position:227-316
               
               
               Cow position:chr13:8354956-8355045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:77
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-319
               
               
               Cow position:chr13:20684373-20684281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-364
               
               
               Cow position:chr13:53138218-53138347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-385
               
               
               Cow position:chr13:15868887-15869048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr13:5873650-5873493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:227-389
               
               
               Cow position:chr13:7097362-7097524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:227-389
               
               
               Cow position:chr13:20854683-20854518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:227-390
               
               
               Cow position:chr13:32914483-32914317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:227-390
               
               
               Cow position:chr13:57929785-57929631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-396
               
               
               Cow position:chr13:9108893-9108730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:227-397
               
               
               Cow position:chr13:26377643-26377470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:227-399
               
               
               Cow position:chr13:6951358-6951527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr13:43342345-43342516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:227-406
               
               
               Cow position:chr13:21127563-21127382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:227-410
               
               
               Cow position:chr13:14543913-14544094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:227-414
               
               
               Cow position:chr13:11942396-11942216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr13:18970761-18970939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:227-416
               
               
               Cow position:chr13:28500289-28500099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:227-416
               
               
               Cow position:chr13:60509347-60509155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr13:10986730-10986536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):86, 191

               
               
               Conread position:227-417
               
               
               Cow position:chr13:22122487-22122678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr13:24160227-24160418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr13:27550513-27550705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-423
               
               
               Cow position:chr13:13797039-13796838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 123

               
               
               Conread position:227-424
               
               
               Cow position:chr13:6113754-6113552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr13:20137591-20137794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:227-430
               
               
               Cow position:chr13:34533153-34532952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:227-430
               
               
               Cow position:chr13:51249599-51249400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:227-431
               
               
               Cow position:chr13:13283116-13283328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:227-431
               
               
               Cow position:chr13:22601908-22601714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-440
               
               
               Cow position:chr13:9707969-9707759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:227-442
               
               
               Cow position:chr13:21981192-21980984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr13:28071656-28071865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr13:37985970-37985752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:227-442
               
               
               Cow position:chr13:40490997-40491207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:227-442
               
               
               Cow position:chr13:47676159-47675943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):86, 98

               
               
               Conread position:227-461
               
               
               Cow position:chr13:45593701-45593928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:227-469
               
               
               Cow position:chr13:26726832-26726584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-471
               
               
               Cow position:chr13:51695747-51695987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:227-490
               
               
               Cow position:chr13:11201813-11202076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 197

               
               
               Conread position:227-490
               
               
               Cow position:chr13:38873183-38872906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 196

               
               
               Conread position:227-492
               
               
               Cow position:chr13:11808359-11808611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-493
               
               
               Cow position:chr13:13260769-13261053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:227-493
               
               
               Cow position:chr13:21170306-21170578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):185, 87

               
               
               Conread position:227-493
               
               
               Cow position:chr13:22085953-22085695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 17

               
               
               Conread position:227-494
               
               
               Cow position:chr13:620470-620203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:227-494
               
               
               Cow position:chr13:10220735-10221001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 194

               
               
               Conread position:227-494
               
               
               Cow position:chr13:13471642-13471363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):102, 122

               
               
               Conread position:227-494
               
               
               Cow position:chr13:14940577-14940852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr13:15194944-15194682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):8, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr13:17569319-17569050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):216, 45

               
               
               Conread position:227-494
               
               
               Cow position:chr13:18994899-18995176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:227-494
               
               
               Cow position:chr13:19427412-19427690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:227-494
               
               
               Cow position:chr13:21275634-21275907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:227-494
               
               
               Cow position:chr13:23512156-23512416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:227-494
               
               
               Cow position:chr13:24753671-24753932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:227-494
               
               
               Cow position:chr13:25495787-25496055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:227-494
               
               
               Cow position:chr13:25504313-25504583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr13:35659532-35659803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:227-494
               
               
               Cow position:chr13:37069115-37069399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:227-494
               
               
               Cow position:chr13:47964408-47964145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:227-494
               
               
               Cow position:chr13:57002497-57002777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:227-494
               
               
               Cow position:chr13:59170422-59170701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):81, 142

               
               
               Conread position:228-333
               
               
               Cow position:chr13:21182914-21182811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:228-355
               
               
               Cow position:chr13:43577767-43577895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:228-378
               
               
               Cow position:chr13:16278039-16278197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-379
               
               
               Cow position:chr13:2192517-2192659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:228-385
               
               
               Cow position:chr13:3388013-3387854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr13:9327314-9327139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:228-399
               
               
               Cow position:chr13:38683245-38683068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:228-409
               
               
               Cow position:chr13:58662020-58662210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-410
               
               
               Cow position:chr13:17619659-17619851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:228-414
               
               
               Cow position:chr13:13265343-13265524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:228-494
               
               
               Cow position:chr13:18851866-18852130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:228-494
               
               
               Cow position:chr13:20821059-20820786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:228-494
               
               
               Cow position:chr13:24715028-24715293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):183, 82

               
               
               Conread position:228-494
               
               
               Cow position:chr13:34281461-34281726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:228-495
               
               
               Cow position:chr13:46515839-46516111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:229-381
               
               
               Cow position:chr13:26097963-26098111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:229-400
               
               
               Cow position:chr13:19588648-19588821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 134

               
               
               Conread position:229-414
               
               
               Cow position:chr13:28376782-28376597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:229-442
               
               
               Cow position:chr13:37775426-37775215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:229-489
               
               
               Cow position:chr13:20217618-20217350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:229-493
               
               
               Cow position:chr13:11060754-11061031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:229-494
               
               
               Cow position:chr13:38329398-38329676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):190, 79

               
               
               Conread position:230-313
               
               
               Cow position:chr13:48037132-48037215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-354
               
               
               Cow position:chr13:20654081-20653953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr13:4037703-4037824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:230-370
               
               
               Cow position:chr13:15104794-15104938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr13:8779037-8779179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:230-378
               
               
               Cow position:chr13:9702237-9702387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-382
               
               
               Cow position:chr13:242413-242566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:230-383
               
               
               Cow position:chr13:6996935-6997085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):127, 93

               
               
               Conread position:230-387
               
               
               Cow position:chr13:20789738-20789581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 126

               
               
               Conread position:230-388
               
               
               Cow position:chr13:38395935-38396094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:230-392
               
               
               Cow position:chr13:53847338-53847180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-393
               
               
               Cow position:chr13:21886900-21886735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr13:5659984-5659821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:230-397
               
               
               Cow position:chr13:9551144-9551307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr13:10423302-10423467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr13:22729625-22729456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:230-397
               
               
               Cow position:chr13:28605614-28605445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr13:51198590-51198757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:230-398
               
               
               Cow position:chr13:1347387-1347219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:230-399
               
               
               Cow position:chr13:585093-584922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr13:5175380-5175545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr13:16163369-16163530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:230-399
               
               
               Cow position:chr13:21009607-21009787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr13:27871552-27871721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 65

               
               
               Conread position:230-399
               
               
               Cow position:chr13:43811710-43811888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:230-405
               
               
               Cow position:chr13:6969784-6969598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr13:6377484-6377662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr13:20440832-20440660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:230-406
               
               
               Cow position:chr13:28536540-28536362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr13:37946605-37946434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr13:8367499-8367675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr13:16292318-16292501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-411
               
               
               Cow position:chr13:37030130-37030302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:230-414
               
               
               Cow position:chr13:50768372-50768563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr13:51077937-51078120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:230-414
               
               
               Cow position:chr13:53390312-53390502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:230-414
               
               
               Cow position:chr13:62252064-62251881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:230-415
               
               
               Cow position:chr13:7038114-7038300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:230-416
               
               
               Cow position:chr13:39376299-39376486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 185

               
               
               Conread position:230-417
               
               
               Cow position:chr13:6616982-6616793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr13:6848705-6848892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 93

               
               
               Conread position:230-417
               
               
               Cow position:chr13:7059239-7059428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr13:9124709-9124890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr13:12769142-12768953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:230-417
               
               
               Cow position:chr13:14575996-14576179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):125, 90

               
               
               Conread position:230-417
               
               
               Cow position:chr13:17837156-17836973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-422
               
               
               Cow position:chr13:48370519-48370328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:230-424
               
               
               Cow position:chr13:25604824-25604645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:230-424
               
               
               Cow position:chr13:50646848-50646657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):135, 83

               
               
               Conread position:230-426
               
               
               Cow position:chr13:46350126-46349930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:230-441
               
               
               Cow position:chr13:43788067-43787846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-441
               
               
               Cow position:chr13:43839906-43839685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr13:6183650-6183428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:230-442
               
               
               Cow position:chr13:8450114-8450322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):189, 89

               
               
               Conread position:230-442
               
               
               Cow position:chr13:10522720-10522926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr13:10925142-10924929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:230-442
               
               
               Cow position:chr13:12673507-12673303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr13:12876195-12875983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:230-442
               
               
               Cow position:chr13:15996817-15997026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr13:30315281-30315499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:230-442
               
               
               Cow position:chr13:32017735-32017520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr13:33974527-33974725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):179, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr13:48222768-48222556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:230-442
               
               
               Cow position:chr13:51940527-51940726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr13:54145700-54145484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 185

               
               
               Conread position:230-442
               
               
               Cow position:chr13:57986153-57985946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:230-447
               
               
               Cow position:chr13:54236591-54236798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:230-449
               
               
               Cow position:chr13:17845265-17845489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:230-453
               
               
               Cow position:chr13:15162855-15162634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 171

               
               
               Conread position:230-465
               
               
               Cow position:chr13:37621597-37621341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):11, 189

               
               
               Conread position:230-468
               
               
               Cow position:chr13:52459692-52459463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:230-472
               
               
               Cow position:chr13:44278127-44278371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:230-480
               
               
               Cow position:chr13:38035620-38035872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-480
               
               
               Cow position:chr13:55765395-55765148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):155, 74

               
               
               Conread position:230-485
               
               
               Cow position:chr13:20880044-20879783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 78

               
               
               Conread position:230-490
               
               
               Cow position:chr13:28552367-28552632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:230-493
               
               
               Cow position:chr13:23667038-23667303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):181, 35

               
               
               Conread position:230-494
               
               
               Cow position:chr13:607482-607218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 224

               
               
               Conread position:230-494
               
               
               Cow position:chr13:972116-971843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr13:3315905-3315628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 214

               
               
               Conread position:230-494
               
               
               Cow position:chr13:5911110-5910850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):179, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr13:7333231-7332950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr13:9899927-9900198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 143

               
               
               Conread position:230-494
               
               
               Cow position:chr13:11103427-11103141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr13:12449200-12448945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr13:14967434-14967168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr13:16020640-16020902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-494
               
               
               Cow position:chr13:17159101-17158825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):90, 246

               
               
               Conread position:230-494
               
               
               Cow position:chr13:17823170-17822901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr13:17855148-17855423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr13:19393077-19393344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr13:19610783-19610513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr13:25579409-25579138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:230-494
               
               
               Cow position:chr13:27180818-27181080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 191

               
               
               Conread position:230-494
               
               
               Cow position:chr13:35526413-35526154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr13:41550023-41549737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 188

               
               
               Conread position:230-494
               
               
               Cow position:chr13:42113796-42114068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 142

               
               
               Conread position:230-494
               
               
               Cow position:chr13:42672649-42672372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 131

               
               
               Conread position:230-494
               
               
               Cow position:chr13:44201790-44202050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr13:49023085-49022816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):189, 75

               
               
               Conread position:230-494
               
               
               Cow position:chr13:49503757-49503481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr13:49795819-49796066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 114

               
               
               Conread position:230-494
               
               
               Cow position:chr13:62007888-62008162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:230-496
               
               
               Cow position:chr13:6973943-6974212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-496
               
               
               Cow position:chr13:41189882-41190147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:231-316
               
               
               Cow position:chr13:11591200-11591286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:231-350
               
               
               Cow position:chr13:15529463-15529351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-382
               
               
               Cow position:chr13:25924446-25924291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:231-385
               
               
               Cow position:chr13:4135662-4135817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:231-385
               
               
               Cow position:chr13:17815026-17815172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:231-389
               
               
               Cow position:chr13:8682233-8682393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:231-390
               
               
               Cow position:chr13:17015339-17015187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-390
               
               
               Cow position:chr13:25313367-25313210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:231-398
               
               
               Cow position:chr13:17975180-17975016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:231-405
               
               
               Cow position:chr13:41979355-41979191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:231-406
               
               
               Cow position:chr13:37405497-37405666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr13:47186012-47186193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 137

               
               
               Conread position:231-414
               
               
               Cow position:chr13:25679109-25679284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr13:55775145-55775323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:231-417
               
               
               Cow position:chr13:43183026-43183215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:231-424
               
               
               Cow position:chr13:23975384-23975193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:231-430
               
               
               Cow position:chr13:47643831-47644040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 197

               
               
               Conread position:231-438
               
               
               Cow position:chr13:49283996-49283792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):118, 84

               
               
               Conread position:231-439
               
               
               Cow position:chr13:24094535-24094328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):82, 94

               
               
               Conread position:231-441
               
               
               Cow position:chr13:53850602-53850815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr13:13775471-13775251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr13:17813253-17813463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):188, 60

               
               
               Conread position:231-442
               
               
               Cow position:chr13:33601447-33601240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:231-443
               
               
               Cow position:chr13:9142052-9142272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:231-469
               
               
               Cow position:chr13:45439314-45439539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-487
               
               
               Cow position:chr13:28440751-28440492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-487
               
               
               Cow position:chr13:55494737-55494477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr13:15991449-15991181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:231-494
               
               
               Cow position:chr13:17089731-17089473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):129, 53

               
               
               Conread position:231-494
               
               
               Cow position:chr13:17745040-17745295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr13:18999312-18999590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:231-494
               
               
               Cow position:chr13:19883252-19882985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr13:20314843-20314569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:231-494
               
               
               Cow position:chr13:41806558-41806825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 46

               
               
               Conread position:231-494
               
               
               Cow position:chr13:52881102-52880833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 186

               
               
               Conread position:231-496
               
               
               Cow position:chr13:46329821-46329552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:232-312
               
               
               Cow position:chr13:55316440-55316360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:72
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-313
               
               
               Cow position:chr13:52198888-52198968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:74
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-370
               
               
               Cow position:chr13:8232786-8232644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-396
               
               
               Cow position:chr13:23478683-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr13:21955287-21955117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:232-399
               
               
               Cow position:chr13:30693345-30693517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:232-406
               
               
               Cow position:chr13:40154956-40154775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:232-409
               
               
               Cow position:chr13:28081499-28081680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-410
               
               
               Cow position:chr13:21426036-21425871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr13:16525446-16525261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):10, 148

               
               
               Conread position:232-414
               
               
               Cow position:chr13:17438079-17437893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 116

               
               
               Conread position:232-417
               
               
               Cow position:chr13:1363243-1363421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr13:10757923-10758094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):172, 66

               
               
               Conread position:232-417
               
               
               Cow position:chr13:18215141-18215332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:232-417
               
               
               Cow position:chr13:45499014-45499195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:232-429
               
               
               Cow position:chr13:16789993-16790188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:232-430
               
               
               Cow position:chr13:3594115-3594300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):187, 91

               
               
               Conread position:232-430
               
               
               Cow position:chr13:18093086-18092895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):187, 53

               
               
               Conread position:232-430
               
               
               Cow position:chr13:21280718-21280520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:232-430
               
               
               Cow position:chr13:37555088-37554894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-431
               
               
               Cow position:chr13:56535250-56535434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-434
               
               
               Cow position:chr13:5092612-5092408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):90, 73

               
               
               Conread position:232-436
               
               
               Cow position:chr13:9612858-9613046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:232-440
               
               
               Cow position:chr13:15621592-15621799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr13:15144048-15143851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):187, 69

               
               
               Conread position:232-442
               
               
               Cow position:chr13:18491390-18491588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:232-442
               
               
               Cow position:chr13:37614415-37614198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 90

               
               
               Conread position:232-446
               
               
               Cow position:chr13:50623028-50622817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):187, 47

               
               
               Conread position:232-461
               
               
               Cow position:chr13:13196024-13196249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):187, 59

               
               
               Conread position:232-464
               
               
               Cow position:chr13:4552609-4552826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:232-464
               
               
               Cow position:chr13:54582657-54582884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):187, 75

               
               
               Conread position:232-465
               
               
               Cow position:chr13:3209540-3209302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:232-465
               
               
               Cow position:chr13:14927036-14927278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 91

               
               
               Conread position:232-467
               
               
               Cow position:chr13:16714483-16714248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):174, 104

               
               
               Conread position:232-468
               
               
               Cow position:chr13:84374-84601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):108, 45

               
               
               Conread position:232-469
               
               
               Cow position:chr13:38284188-38283959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:232-489
               
               
               Cow position:chr13:20534683-20534939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 31

               
               
               Conread position:232-490
               
               
               Cow position:chr13:13533879-13533624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 86

               
               
               Conread position:232-493
               
               
               Cow position:chr13:15195418-15195161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):209, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr13:1568717-1568973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):218, 70

               
               
               Conread position:232-494
               
               
               Cow position:chr13:6189817-6189560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr13:12989645-12989893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):191, 57

               
               
               Conread position:232-494
               
               
               Cow position:chr13:13501828-13501572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):187, 84

               
               
               Conread position:232-494
               
               
               Cow position:chr13:14411674-14411936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:232-494
               
               
               Cow position:chr13:15239729-15239470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr13:15756899-15757170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):75, 143

               
               
               Conread position:232-494
               
               
               Cow position:chr13:17292345-17292083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):201, 76

               
               
               Conread position:232-494
               
               
               Cow position:chr13:17821475-17821218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:232-494
               
               
               Cow position:chr13:25695984-25695721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 53

               
               
               Conread position:232-494
               
               
               Cow position:chr13:44322675-44322952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:232-494
               
               
               Cow position:chr13:52477862-52477596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:232-494
               
               
               Cow position:chr13:54701964-54702237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:232-494
               
               
               Cow position:chr13:60375705-60375438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:232-496
               
               
               Cow position:chr13:18058464-18058194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-496
               
               
               Cow position:chr13:54389235-54388967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:233-346
               
               
               Cow position:chr13:25532227-25532115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:233-381
               
               
               Cow position:chr13:41474660-41474802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:233-392
               
               
               Cow position:chr13:47651631-47651475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 81

               
               
               Conread position:233-404
               
               
               Cow position:chr13:53619784-53619957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr13:38335095-38334916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:233-414
               
               
               Cow position:chr13:23685219-23685036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:233-416
               
               
               Cow position:chr13:22046226-22046043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:233-417
               
               
               Cow position:chr13:11933822-11933636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 116

               
               
               Conread position:233-417
               
               
               Cow position:chr13:25521140-25520949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr13:30148771-30148597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:233-431
               
               
               Cow position:chr13:33854897-33854703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 34

               
               
               Conread position:233-440
               
               
               Cow position:chr13:6486469-6486261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 179

               
               
               Conread position:233-441
               
               
               Cow position:chr13:42200404-42200610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:233-442
               
               
               Cow position:chr13:15061706-15061489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 40

               
               
               Conread position:233-442
               
               
               Cow position:chr13:16014587-16014805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:233-442
               
               
               Cow position:chr13:17977126-17977342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:233-442
               
               
               Cow position:chr13:43525465-43525243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:233-442
               
               
               Cow position:chr13:47243768-47243563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:233-444
               
               
               Cow position:chr13:56035073-56034866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):176, 87

               
               
               Conread position:233-468
               
               
               Cow position:chr13:20497426-20497669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:233-492
               
               
               Cow position:chr13:46525645-46525388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:233-493
               
               
               Cow position:chr13:11231512-11231259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:233-493
               
               
               Cow position:chr13:17114597-17114327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:233-494
               
               
               Cow position:chr13:12670668-12670395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):186, 48

               
               
               Conread position:233-494
               
               
               Cow position:chr13:19022048-19022325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr13:26262006-26261749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:233-494
               
               
               Cow position:chr13:53573763-53574020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 10

               
               
               Conread position:233-494
               
               
               Cow position:chr13:55582978-55583243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:233-495
               
               
               Cow position:chr13:20288122-20288381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-496
               
               
               Cow position:chr13:45073462-45073201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):152, 34

               
               
               Conread position:234-315
               
               
               Cow position:chr13:27170688-27170607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:73
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-361
               
               
               Cow position:chr13:21012750-21012880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-370
               
               
               Cow position:chr13:46330154-46330017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):119, 89

               
               
               Conread position:234-374
               
               
               Cow position:chr13:27146605-27146747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:234-379
               
               
               Cow position:chr13:58157272-58157129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 80

               
               
               Conread position:234-383
               
               
               Cow position:chr13:39775705-39775551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):79, 131

               
               
               Conread position:234-388
               
               
               Cow position:chr13:20413770-20413611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:234-391
               
               
               Cow position:chr13:19223436-19223595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:234-391
               
               
               Cow position:chr13:43102766-43102923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:234-392
               
               
               Cow position:chr13:390852-390699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:234-399
               
               
               Cow position:chr13:21024768-21024935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:234-399
               
               
               Cow position:chr13:29665802-29665969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr13:33518174-33518008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:234-406
               
               
               Cow position:chr13:28695644-28695815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:234-413
               
               
               Cow position:chr13:54681880-54682065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:234-416
               
               
               Cow position:chr13:10511921-10511736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:234-417
               
               
               Cow position:chr13:11434789-11434609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:234-417
               
               
               Cow position:chr13:18876987-18877172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr13:40541324-40541139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr13:45130301-45130480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:234-431
               
               
               Cow position:chr13:8350087-8350304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr13:5263494-5263289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:234-442
               
               
               Cow position:chr13:14795991-14796197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:234-442
               
               
               Cow position:chr13:34873370-34873581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 129

               
               
               Conread position:234-442
               
               
               Cow position:chr13:45352812-45353023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:234-462
               
               
               Cow position:chr13:1462506-1462281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):211, 9

               
               
               Conread position:234-472
               
               
               Cow position:chr13:15083448-15083685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:234-490
               
               
               Cow position:chr13:26480418-26480167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:234-492
               
               
               Cow position:chr13:12045561-12045288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-492
               
               
               Cow position:chr13:43479847-43480105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:234-493
               
               
               Cow position:chr13:8362962-8362699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 204

               
               
               Conread position:234-493
               
               
               Cow position:chr13:43595320-43595060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:234-494
               
               
               Cow position:chr13:6860960-6861232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 250

               
               
               Conread position:234-494
               
               
               Cow position:chr13:7149022-7149280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):182, 40

               
               
               Conread position:234-494
               
               
               Cow position:chr13:9975283-9975026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:234-494
               
               
               Cow position:chr13:15193103-15192840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):209, 184

               
               
               Conread position:234-494
               
               
               Cow position:chr13:16038498-16038243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr13:17611766-17611500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr13:21136127-21135850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr13:30258633-30258899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:234-494
               
               
               Cow position:chr13:45074118-45073868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):166, 70

               
               
               Conread position:234-494
               
               
               Cow position:chr13:52749678-52749428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:234-494
               
               
               Cow position:chr13:54128813-54128544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:234-494
               
               
               Cow position:chr13:55161995-55162261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:234-494
               
               
               Cow position:chr13:57475632-57475367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 172

               
               
               Conread position:235-316
               
               
               Cow position:chr13:47356320-47356401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:74
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-355
               
               
               Cow position:chr13:34606475-34606597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:235-370
               
               
               Cow position:chr13:18874918-18875055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-381
               
               
               Cow position:chr13:15114253-15114401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-382
               
               
               Cow position:chr13:20042478-20042329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:235-383
               
               
               Cow position:chr13:55327225-55327373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-385
               
               
               Cow position:chr13:2529166-2529016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 90

               
               
               Conread position:235-388
               
               
               Cow position:chr13:55007984-55007835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 88

               
               
               Conread position:235-391
               
               
               Cow position:chr13:4954330-4954486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):67, 122

               
               
               Conread position:235-392
               
               
               Cow position:chr13:28587960-28587801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-397
               
               
               Cow position:chr13:23795593-23795442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr13:21246927-21246749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr13:22115461-22115640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:235-414
               
               
               Cow position:chr13:48373530-48373355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:235-414
               
               
               Cow position:chr13:50565525-50565350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr13:52464525-52464704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:235-414
               
               
               Cow position:chr13:53357615-53357796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr13:369340-369157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr13:3153533-3153716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-417
               
               
               Cow position:chr13:8637480-8637664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr13:11146839-11147023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr13:11543346-11543535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:235-417
               
               
               Cow position:chr13:19033341-19033524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-417
               
               
               Cow position:chr13:26422823-26423017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr13:29802413-29802581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:235-419
               
               
               Cow position:chr13:57322935-57323116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:235-427
               
               
               Cow position:chr13:19222458-19222655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:235-430
               
               
               Cow position:chr13:42302256-42302060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:235-442
               
               
               Cow position:chr13:7104444-7104646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):184, 18

               
               
               Conread position:235-442
               
               
               Cow position:chr13:10210867-10210667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr13:14644839-14645043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):165, 85

               
               
               Conread position:235-442
               
               
               Cow position:chr13:24215891-24215681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:235-442
               
               
               Cow position:chr13:25941476-25941271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:235-442
               
               
               Cow position:chr13:32282912-32283119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:235-442
               
               
               Cow position:chr13:55080924-55081134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:235-450
               
               
               Cow position:chr13:26960012-26959797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:235-473
               
               
               Cow position:chr13:7076026-7076280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 193

               
               
               Conread position:235-493
               
               
               Cow position:chr13:57770197-57769959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr13:9906514-9906783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:235-494
               
               
               Cow position:chr13:12770407-12770142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr13:18299180-18299454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:235-494
               
               
               Cow position:chr13:20261548-20261274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:235-494
               
               
               Cow position:chr13:20360061-20360326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:235-494
               
               
               Cow position:chr13:21288299-21288036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 88

               
               
               Conread position:235-494
               
               
               Cow position:chr13:39826341-39826602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 35

               
               
               Conread position:235-494
               
               
               Cow position:chr13:52641165-52640900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:235-494
               
               
               Cow position:chr13:52893934-52894193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:235-494
               
               
               Cow position:chr13:55674424-55674159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 246

               
               
               Conread position:235-496
               
               
               Cow position:chr13:18696609-18696895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 139

               
               
               Conread position:236-398
               
               
               Cow position:chr13:6972167-6972330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:236-420
               
               
               Cow position:chr13:17135428-17135244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:236-431
               
               
               Cow position:chr13:28439203-28439390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:236-489
               
               
               Cow position:chr13:17971256-17970982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 151

               
               
               Conread position:236-494
               
               
               Cow position:chr13:15289132-15288873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):180, 78

               
               
               Conread position:237-399
               
               
               Cow position:chr13:16711134-16711297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:238-406
               
               
               Cow position:chr13:5992635-5992810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:238-441
               
               
               Cow position:chr13:16908002-16908208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:238-446
               
               
               Cow position:chr13:6926301-6926514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr13:4665061-4664816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):183, 68

               
               
               Conread position:238-494
               
               
               Cow position:chr13:11260066-11260320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):162, 80

               
               
               Conread position:238-494
               
               
               Cow position:chr13:24229999-24230259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:238-494
               
               
               Cow position:chr13:37803668-37803931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 218

               
               
               Conread position:238-494
               
               
               Cow position:chr13:48597698-48597959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:239-377
               
               
               Cow position:chr13:21070794-21070935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:239-377
               
               
               Cow position:chr13:62304359-62304497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:239-399
               
               
               Cow position:chr13:3278172-3278021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:239-414
               
               
               Cow position:chr13:24796673-24796841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:239-442
               
               
               Cow position:chr13:56958766-56958960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:239-443
               
               
               Cow position:chr13:20795417-20795217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:240-366
               
               
               Cow position:chr13:30809584-30809458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-389
               
               
               Cow position:chr13:10040765-10040622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:240-392
               
               
               Cow position:chr13:17994582-17994432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:240-392
               
               
               Cow position:chr13:20214225-20214380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 108

               
               
               Conread position:240-397
               
               
               Cow position:chr13:40483189-40483033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):79, 85

               
               
               Conread position:240-397
               
               
               Cow position:chr13:42203822-42203970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:240-397
               
               
               Cow position:chr13:42613882-42614029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr13:46298963-46298808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:240-404
               
               
               Cow position:chr13:10055207-10055374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-404
               
               
               Cow position:chr13:27198705-27198861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr13:10279713-10279881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:240-406
               
               
               Cow position:chr13:10534879-10535045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:240-407
               
               
               Cow position:chr13:17624108-17624278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:240-407
               
               
               Cow position:chr13:26395250-26395417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr13:2776075-2776248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-411
               
               
               Cow position:chr13:5279418-5279238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:240-417
               
               
               Cow position:chr13:11410499-11410680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:240-417
               
               
               Cow position:chr13:11565630-11565803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-419
               
               
               Cow position:chr13:48126895-48127076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-421
               
               
               Cow position:chr13:13225687-13225857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-425
               
               
               Cow position:chr13:20174528-20174713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 181

               
               
               Conread position:240-425
               
               
               Cow position:chr13:22345484-22345302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:240-429
               
               
               Cow position:chr13:16099338-16099142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:240-430
               
               
               Cow position:chr13:13780967-13781160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:240-430
               
               
               Cow position:chr13:52913667-52913853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-440
               
               
               Cow position:chr13:4790332-4790127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):67, 124

               
               
               Conread position:240-440
               
               
               Cow position:chr13:33256288-33256486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:240-441
               
               
               Cow position:chr13:6980716-6980910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-442
               
               
               Cow position:chr13:8699952-8699745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr13:10989283-10989082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 96

               
               
               Conread position:240-442
               
               
               Cow position:chr13:15993174-15993378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:240-442
               
               
               Cow position:chr13:19598874-19598673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):171, 68

               
               
               Conread position:240-442
               
               
               Cow position:chr13:37593155-37592954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:240-442
               
               
               Cow position:chr13:42849339-42849141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:240-445
               
               
               Cow position:chr13:2907097-2907296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):166, 28

               
               
               Conread position:240-445
               
               
               Cow position:chr13:49356258-49356054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 84

               
               
               Conread position:240-454
               
               
               Cow position:chr13:20115035-20115253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:240-463
               
               
               Cow position:chr13:49204803-49205019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:240-464
               
               
               Cow position:chr13:42640171-42640405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:240-468
               
               
               Cow position:chr13:14035208-14034979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:240-490
               
               
               Cow position:chr13:36876856-36877097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:240-491
               
               
               Cow position:chr13:41157188-41157450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:240-492
               
               
               Cow position:chr13:21106934-21107191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):119, 107

               
               
               Conread position:240-493
               
               
               Cow position:chr13:13088823-13089076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr13:151761-152010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr13:5671795-5671540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):176, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr13:5758541-5758291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr13:15257576-15257319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:240-494
               
               
               Cow position:chr13:17021935-17021679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr13:17350134-17350403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:240-494
               
               
               Cow position:chr13:20784385-20784644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr13:21171781-21171522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:240-494
               
               
               Cow position:chr13:21235877-21235636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:240-494
               
               
               Cow position:chr13:27525468-27525215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr13:45023432-45023162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):69, 172

               
               
               Conread position:240-495
               
               
               Cow position:chr13:21242285-21242033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-496
               
               
               Cow position:chr13:7265315-7265069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):204, 61

               
               
               Conread position:241-338
               
               
               Cow position:chr13:20186642-20186547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-397
               
               
               Cow position:chr13:50714938-50715094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 120

               
               
               Conread position:241-399
               
               
               Cow position:chr13:23823238-23823086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-405
               
               
               Cow position:chr13:23399558-23399720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:241-406
               
               
               Cow position:chr13:54128039-54127872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:241-410
               
               
               Cow position:chr13:17058064-17057888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:241-414
               
               
               Cow position:chr13:10715652-10715826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:241-418
               
               
               Cow position:chr13:6865872-6865698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-422
               
               
               Cow position:chr13:23805230-23805046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:241-422
               
               
               Cow position:chr13:38702845-38702659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:241-442
               
               
               Cow position:chr13:44003491-44003691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:241-464
               
               
               Cow position:chr13:39939774-39939564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:241-469
               
               
               Cow position:chr13:6663964-6663725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 160

               
               
               Conread position:241-494
               
               
               Cow position:chr13:15041683-15041424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:241-494
               
               
               Cow position:chr13:19278887-19279146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:241-494
               
               
               Cow position:chr13:34729049-34728792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:241-494
               
               
               Cow position:chr13:35557319-35557055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:241-494
               
               
               Cow position:chr13:61977166-61976915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:242-399
               
               
               Cow position:chr13:39347434-39347278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 83

               
               
               Conread position:242-410
               
               
               Cow position:chr13:1037429-1037598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr13:50457644-50457824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-418
               
               
               Cow position:chr13:20088926-20088748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:242-422
               
               
               Cow position:chr13:52177395-52177572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:242-469
               
               
               Cow position:chr13:33054580-33054356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:242-478
               
               
               Cow position:chr13:58763816-58763590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:242-492
               
               
               Cow position:chr13:20473882-20473634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):177, 65

               
               
               Conread position:242-494
               
               
               Cow position:chr13:18197815-18197557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 75

               
               
               Conread position:242-494
               
               
               Cow position:chr13:20378525-20378286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:242-496
               
               
               Cow position:chr13:37818952-37818698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:244-397
               
               
               Cow position:chr13:9492571-9492717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:244-425
               
               
               Cow position:chr13:52027341-52027165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:244-494
               
               
               Cow position:chr13:19007738-19007982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:245-388
               
               
               Cow position:chr13:17958636-17958776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:245-411
               
               
               Cow position:chr13:6442311-6442145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:245-469
               
               
               Cow position:chr13:25978398-25978169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:245-494
               
               
               Cow position:chr13:15974414-15974662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 56

               
               
               Conread position:246-406
               
               
               Cow position:chr13:20520107-20520270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:246-494
               
               
               Cow position:chr13:26698700-26698448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):173, 68

               
               
               Conread position:246-494
               
               
               Cow position:chr13:46111765-46112016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):173, 53

               
               
               Conread position:247-416
               
               
               Cow position:chr13:18615169-18615349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr13:4404332-4404497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:247-422
               
               
               Cow position:chr13:16834738-16834559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-440
               
               
               Cow position:chr13:18340328-18340523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:247-464
               
               
               Cow position:chr13:21110471-21110696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:247-494
               
               
               Cow position:chr13:20868948-20868706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:248-391
               
               
               Cow position:chr13:12185810-12185666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:248-397
               
               
               Cow position:chr13:57446314-57446173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:248-399
               
               
               Cow position:chr13:8667414-8667567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:248-406
               
               
               Cow position:chr13:26109796-26109957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 150

               
               
               Conread position:248-417
               
               
               Cow position:chr13:8537617-8537788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:248-422
               
               
               Cow position:chr13:49475870-49476049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:248-494
               
               
               Cow position:chr13:12974614-12974853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:248-494
               
               
               Cow position:chr13:38548384-38548628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:248-494
               
               
               Cow position:chr13:48165624-48165374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:249-442
               
               
               Cow position:chr13:37521949-37521752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:249-494
               
               
               Cow position:chr13:24369385-24369632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):170, 15

               
               
               Conread position:250-382
               
               
               Cow position:chr13:8423202-8423336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:250-417
               
               
               Cow position:chr13:24155311-24155479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 159

               
               
               Conread position:250-442
               
               
               Cow position:chr13:6465882-6465698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:250-448
               
               
               Cow position:chr13:38012140-38012330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):169, 67

               
               
               Conread position:250-494
               
               
               Cow position:chr13:19779054-19778799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 107

               
               
               Conread position:250-494
               
               
               Cow position:chr13:51128275-51128020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:252-494
               
               
               Cow position:chr13:20154809-20155050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):168, 13

               
               
               Conread position:257-496
               
               
               Cow position:chr13:13211696-13211938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):163, 60

               
               
               Conread position:261-413
               
               
               Cow position:chr13:52249233-52249086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:262-430
               
               
               Cow position:chr13:9391377-9391540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):157, 15

               
               
               Conread position:265-494
               
               
               Cow position:chr13:21176503-21176272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):154, 43

               
               
               Conread position:266-424
               
               
               Cow position:chr13:6976026-6975871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):150, 54

               
               
               Conread position:268-470
               
               
               Cow position:chr13:23478847-23479048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):151, 177

               
               
               Conread position:268-494
               
               
               Cow position:chr13:20666567-20666335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):151, 50

               
               
               Conread position:271-494
               
               
               Cow position:chr13:52057379-52057610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:274-397
               
               
               Cow position:chr13:34694187-34694066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr13:38703054-38702931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:274-431
               
               
               Cow position:chr13:20876094-20875937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-469
               
               
               Cow position:chr13:16160245-16160439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:281-443
               
               
               Cow position:chr13:37980927-37980765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:283-417
               
               
               Cow position:chr13:43919432-43919295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:284-414
               
               
               Cow position:chr13:62325796-62325928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:290-442
               
               
               Cow position:chr13:11460475-11460625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:294-458
               
               
               Cow position:chr13:51814087-51813918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:295-494
               
               
               Cow position:chr13:19320374-19320585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:295-494
               
               
               Cow position:chr13:23856055-23856262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):124, 134

               
               
               Conread position:299-493
               
               
               Cow position:chr13:8232851-8233044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):144, 23

               
               
               Conread position:301-496
               
               
               Cow position:chr13:18172186-18172390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):113, 120

               
               
               Conread position:302-414
               
               
               Cow position:chr13:28652592-28652704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-430
               
               
               Cow position:chr13:20826873-20826743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr13:19750566-19750707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 78

               
               
               Conread position:302-489
               
               
               Cow position:chr13:17439917-17439725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):117, 97

               
               
               Conread position:302-490
               
               
               Cow position:chr13:37381652-37381847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr13:547346-547535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr13:8355057-8355255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:302-494
               
               
               Cow position:chr13:20679190-20679389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 177

               
               
               Conread position:302-494
               
               
               Cow position:chr13:37640441-37640633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:302-496
               
               
               Cow position:chr13:36771572-36771368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:303-431
               
               
               Cow position:chr13:12237297-12237426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-442
               
               
               Cow position:chr13:51116171-51116032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:303-494
               
               
               Cow position:chr13:11381870-11381670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:304-494
               
               
               Cow position:chr13:20706352-20706156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-491
               
               
               Cow position:chr13:6087038-6086855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:305-493
               
               
               Cow position:chr13:40634718-40634902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 141

               
               
               Conread position:305-494
               
               
               Cow position:chr13:17563594-17563786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:305-494
               
               
               Cow position:chr13:56148375-56148573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr13:56160592-56160394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:305-496
               
               
               Cow position:chr13:47022221-47022415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:305-496
               
               
               Cow position:chr13:56155297-56155101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:306-442
               
               
               Cow position:chr13:15460919-15460784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:307-442
               
               
               Cow position:chr13:21294931-21295067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr13:55316341-55316139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 168

               
               
               Conread position:307-494
               
               
               Cow position:chr13:55727758-55727950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:308-492
               
               
               Cow position:chr13:50568549-50568369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:308-494
               
               
               Cow position:chr13:3211405-3211601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:309-431
               
               
               Cow position:chr13:21188226-21188349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:315-494
               
               
               Cow position:chr13:13176515-13176701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:315-496
               
               
               Cow position:chr13:37528089-37527912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 131

               
               
               Conread position:319-490
               
               
               Cow position:chr13:40722839-40722665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-492
               
               
               Cow position:chr13:48037491-48037669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 38

               
               
               Conread position:321-494
               
               
               Cow position:chr13:31813745-31813927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:321-494
               
               
               Cow position:chr13:37981874-37981695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):90, 76

               
               
               Conread position:324-494
               
               
               Cow position:chr13:10929115-10928942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 85

               
               
               Conread position:324-494
               
               
               Cow position:chr13:15885147-15884970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:326-494
               
               
               Cow position:chr13:37484404-37484222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr13:15144487-15144315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:329-494
               
               
               Cow position:chr13:18181897-18181723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr13:18835082-18835242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:330-441
               
               
               Cow position:chr13:16156346-16156234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:331-487
               
               
               Cow position:chr13:15902904-15903066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:336-493
               
               
               Cow position:chr13:29123189-29123354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:348-494
               
               
               Cow position:chr13:15233823-15233972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:212-399
               
               
               Cow position:chr14:35421269-35421077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:212-493
               
               
               Cow position:chr14:12244565-12244276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:213-494
               
               
               Cow position:chr14:26115875-26116167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:214-380
               
               
               Cow position:chr14:42917739-42917895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:214-494
               
               
               Cow position:chr14:41253156-41252882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):147, 8

               
               
               Conread position:215-399
               
               
               Cow position:chr14:25912476-25912656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:216-450
               
               
               Cow position:chr14:18559234-18559005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):140, 104

               
               
               Conread position:218-399
               
               
               Cow position:chr14:37236193-37236375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:220-313
               
               
               Cow position:chr14:32754404-32754309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:220-435
               
               
               Cow position:chr14:8707384-8707591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):199, 21

               
               
               Conread position:220-459
               
               
               Cow position:chr14:13385194-13385442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:220-494
               
               
               Cow position:chr14:49824786-49824514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):199, 43

               
               
               Conread position:221-406
               
               
               Cow position:chr14:27364404-27364593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:222-353
               
               
               Cow position:chr14:13006349-13006486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr14:34200029-34199794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:222-442
               
               
               Cow position:chr14:40208736-40208947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:222-443
               
               
               Cow position:chr14:14224396-14224618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:222-468
               
               
               Cow position:chr14:10851856-10852102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):80, 193

               
               
               Conread position:222-468
               
               
               Cow position:chr14:13731269-13731019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:222-493
               
               
               Cow position:chr14:2975255-2974985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:222-494
               
               
               Cow position:chr14:33229570-33229289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:222-494
               
               
               Cow position:chr14:33247586-33247325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):197, 22

               
               
               Conread position:223-385
               
               
               Cow position:chr14:21968678-21968518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:223-494
               
               
               Cow position:chr14:23682096-23682373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:224-409
               
               
               Cow position:chr14:32784288-32784100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:224-490
               
               
               Cow position:chr14:12635046-12634784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):195, 71

               
               
               Conread position:224-493
               
               
               Cow position:chr14:9019873-9020133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):167, 17

               
               
               Conread position:224-494
               
               
               Cow position:chr14:14622337-14622073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):219, 79

               
               
               Conread position:225-397
               
               
               Cow position:chr14:37504344-37504518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:225-399
               
               
               Cow position:chr14:11831966-11831784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:225-405
               
               
               Cow position:chr14:47893945-47894127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:225-406
               
               
               Cow position:chr14:10721870-10721695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:225-406
               
               
               Cow position:chr14:36151156-36151337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-413
               
               
               Cow position:chr14:9510377-9510562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:225-442
               
               
               Cow position:chr14:44084644-44084440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):194, 75

               
               
               Conread position:225-494
               
               
               Cow position:chr14:1868956-1868690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):191, 46

               
               
               Conread position:225-494
               
               
               Cow position:chr14:48741034-48740764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:226-414
               
               
               Cow position:chr14:5959160-5958967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:226-417
               
               
               Cow position:chr14:21530248-21530053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:226-417
               
               
               Cow position:chr14:44615318-44615125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:226-490
               
               
               Cow position:chr14:7636666-7636392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:226-494
               
               
               Cow position:chr14:25903365-25903632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 91

               
               
               Conread position:227-316
               
               
               Cow position:chr14:29631737-29631826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr14:16593214-16593370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-388
               
               
               Cow position:chr14:13516157-13515995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:227-397
               
               
               Cow position:chr14:3125867-3125697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:227-397
               
               
               Cow position:chr14:8591011-8590845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:227-399
               
               
               Cow position:chr14:49817854-49817680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:227-406
               
               
               Cow position:chr14:39041195-39041382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:227-407
               
               
               Cow position:chr14:7036526-7036344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr14:10858274-10858450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:227-414
               
               
               Cow position:chr14:25284827-25285018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:227-417
               
               
               Cow position:chr14:8083030-8083221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 106

               
               
               Conread position:227-417
               
               
               Cow position:chr14:15428312-15428501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:227-417
               
               
               Cow position:chr14:28465384-28465192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr14:37436888-37436687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr14:41267889-41267709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr14:49940847-49941034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 93

               
               
               Conread position:227-423
               
               
               Cow position:chr14:50589556-50589373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):156, 41

               
               
               Conread position:227-426
               
               
               Cow position:chr14:20736448-20736644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):192, 54

               
               
               Conread position:227-440
               
               
               Cow position:chr14:24732068-24732284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:227-442
               
               
               Cow position:chr14:9307900-9308114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:227-442
               
               
               Cow position:chr14:12033411-12033192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 139

               
               
               Conread position:227-442
               
               
               Cow position:chr14:12954541-12954336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:227-442
               
               
               Cow position:chr14:15470153-15469933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:227-490
               
               
               Cow position:chr14:21357391-21357663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):192, 174

               
               
               Conread position:227-490
               
               
               Cow position:chr14:45052274-45052543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:227-490
               
               
               Cow position:chr14:49487798-49488064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):173, 60

               
               
               Conread position:227-492
               
               
               Cow position:chr14:41210698-41210960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:227-493
               
               
               Cow position:chr14:33457211-33456935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):92, 237

               
               
               Conread position:227-494
               
               
               Cow position:chr14:8541372-8541108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr14:10693424-10693152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 176

               
               
               Conread position:227-494
               
               
               Cow position:chr14:13042593-13042863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):75, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr14:15997918-15997655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:227-494
               
               
               Cow position:chr14:19193293-19193580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 219

               
               
               Conread position:227-494
               
               
               Cow position:chr14:23442861-23443125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):189, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr14:36289956-36289692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:227-494
               
               
               Cow position:chr14:37422939-37422681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr14:38144276-38144002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 132

               
               
               Conread position:228-399
               
               
               Cow position:chr14:49501173-49501001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:228-413
               
               
               Cow position:chr14:39518581-39518763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:228-417
               
               
               Cow position:chr14:10920733-10920540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 137

               
               
               Conread position:228-442
               
               
               Cow position:chr14:20482017-20481794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 170

               
               
               Conread position:228-490
               
               
               Cow position:chr14:8848112-8848357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:228-494
               
               
               Cow position:chr14:24607788-24608073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):6, 255

               
               
               Conread position:229-310
               
               
               Cow position:chr14:15055371-15055290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:73
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-366
               
               
               Cow position:chr14:21284489-21284624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:229-399
               
               
               Cow position:chr14:40806762-40806606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:229-411
               
               
               Cow position:chr14:27847192-27847367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:229-417
               
               
               Cow position:chr14:7342301-7342478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:229-431
               
               
               Cow position:chr14:36775499-36775687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):190, 71

               
               
               Conread position:229-440
               
               
               Cow position:chr14:23078956-23078745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):190, 89

               
               
               Conread position:229-467
               
               
               Cow position:chr14:48744351-48744585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):190, 94

               
               
               Conread position:229-492
               
               
               Cow position:chr14:15313394-15313668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 208

               
               
               Conread position:229-493
               
               
               Cow position:chr14:6736032-6735753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:229-494
               
               
               Cow position:chr14:21224479-21224747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):175, 85

               
               
               Conread position:230-311
               
               
               Cow position:chr14:41828091-41828010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:75
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-338
               
               
               Cow position:chr14:38411142-38411246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-351
               
               
               Cow position:chr14:14710392-14710269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-351
               
               
               Cow position:chr14:50683194-50683076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr14:36723244-36723371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-364
               
               
               Cow position:chr14:15944830-15944693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 77

               
               
               Conread position:230-373
               
               
               Cow position:chr14:6389046-6388904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:230-391
               
               
               Cow position:chr14:12137854-12138014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:230-391
               
               
               Cow position:chr14:39097341-39097505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr14:45955124-45955289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:230-398
               
               
               Cow position:chr14:24921935-24922104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:230-399
               
               
               Cow position:chr14:11981301-11981472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:230-403
               
               
               Cow position:chr14:21593164-21592994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr14:33328802-33328971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:230-407
               
               
               Cow position:chr14:24387288-24387454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr14:10937507-10937693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr14:30023363-30023177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr14:27303495-27303679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:230-415
               
               
               Cow position:chr14:44713253-44713440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr14:10387495-10387681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-416
               
               
               Cow position:chr14:47276864-47276675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr14:145674-145488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:230-417
               
               
               Cow position:chr14:6864835-6865023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr14:7357855-7358047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr14:11043657-11043468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr14:12343005-12342815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr14:12496320-12496508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 64

               
               
               Conread position:230-417
               
               
               Cow position:chr14:14812386-14812197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr14:18270197-18270384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):126, 131

               
               
               Conread position:230-417
               
               
               Cow position:chr14:20984173-20984361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:230-417
               
               
               Cow position:chr14:22202293-22202107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 78

               
               
               Conread position:230-417
               
               
               Cow position:chr14:27338175-27338364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:230-417
               
               
               Cow position:chr14:33414386-33414201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 159

               
               
               Conread position:230-417
               
               
               Cow position:chr14:37243561-37243372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr14:38920794-38920972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:230-417
               
               
               Cow position:chr14:40230798-40230612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:230-424
               
               
               Cow position:chr14:27823269-27823463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:230-427
               
               
               Cow position:chr14:36425567-36425373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:230-431
               
               
               Cow position:chr14:36166777-36166974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):92, 137

               
               
               Conread position:230-441
               
               
               Cow position:chr14:4227386-4227174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:230-442
               
               
               Cow position:chr14:6600115-6599908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr14:6898909-6899121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 204

               
               
               Conread position:230-442
               
               
               Cow position:chr14:8923753-8923535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:230-442
               
               
               Cow position:chr14:15211771-15211975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):186, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr14:20245331-20245120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-442
               
               
               Cow position:chr14:24236659-24236874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr14:28924002-28924217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr14:29734522-29734315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:230-444
               
               
               Cow position:chr14:26918828-26919048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:230-467
               
               
               Cow position:chr14:20826328-20826566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):88, 94

               
               
               Conread position:230-472
               
               
               Cow position:chr14:21371947-21371703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:230-478
               
               
               Cow position:chr14:31130540-31130288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):79, 118

               
               
               Conread position:230-490
               
               
               Cow position:chr14:35381426-35381693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:230-490
               
               
               Cow position:chr14:35420925-35420660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:230-491
               
               
               Cow position:chr14:24527326-24527057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 117

               
               
               Conread position:230-492
               
               
               Cow position:chr14:20016873-20016600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 226

               
               
               Conread position:230-494
               
               
               Cow position:chr14:6541890-6541617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr14:11508401-11508138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 119

               
               
               Conread position:230-494
               
               
               Cow position:chr14:12146644-12146372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr14:16256611-16256875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):170, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr14:18485418-18485145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 158

               
               
               Conread position:230-494
               
               
               Cow position:chr14:23080918-23080657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:230-494
               
               
               Cow position:chr14:33751374-33751643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:230-494
               
               
               Cow position:chr14:40474399-40474668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:230-494
               
               
               Cow position:chr14:41486432-41486153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:230-494
               
               
               Cow position:chr14:47673042-47672780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr14:48838428-48838702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:230-494
               
               
               Cow position:chr14:49713817-49714086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-496
               
               
               Cow position:chr14:3949267-3948991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-496
               
               
               Cow position:chr14:18345887-18345621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:230-496
               
               
               Cow position:chr14:29723739-29723482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):211, 73

               
               
               Conread position:231-316
               
               
               Cow position:chr14:5634374-5634289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr14:8688677-8688541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-382
               
               
               Cow position:chr14:31765315-31765464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:231-391
               
               
               Cow position:chr14:2852988-2853147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:231-392
               
               
               Cow position:chr14:47200296-47200126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:231-398
               
               
               Cow position:chr14:41755994-41756153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:231-399
               
               
               Cow position:chr14:31342047-31342217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-405
               
               
               Cow position:chr14:7271420-7271239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:231-407
               
               
               Cow position:chr14:41966063-41966245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr14:25290646-25290831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):93, 166

               
               
               Conread position:231-417
               
               
               Cow position:chr14:22916467-22916268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:231-417
               
               
               Cow position:chr14:23465214-23465026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:231-417
               
               
               Cow position:chr14:50519339-50519156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:231-420
               
               
               Cow position:chr14:2759296-2759108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:231-430
               
               
               Cow position:chr14:5044514-5044705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):180, 26

               
               
               Conread position:231-441
               
               
               Cow position:chr14:25986350-25986564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:231-442
               
               
               Cow position:chr14:48900008-48900223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:231-443
               
               
               Cow position:chr14:18309462-18309257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:231-486
               
               
               Cow position:chr14:19487151-19487387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-490
               
               
               Cow position:chr14:21933506-21933237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:231-493
               
               
               Cow position:chr14:41749918-41749655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-493
               
               
               Cow position:chr14:42155129-42154858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-494
               
               
               Cow position:chr14:1715566-1715834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:231-494
               
               
               Cow position:chr14:5222447-5222182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:231-494
               
               
               Cow position:chr14:16352196-16352452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):212, 81

               
               
               Conread position:231-494
               
               
               Cow position:chr14:33714836-33714570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:231-496
               
               
               Cow position:chr14:16457349-16457633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:232-314
               
               
               Cow position:chr14:33462046-33462128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:74
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-350
               
               
               Cow position:chr14:45549262-45549149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr14:30024862-30024976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr14:11056894-11056727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:232-397
               
               
               Cow position:chr14:18112752-18112590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 74

               
               
               Conread position:232-399
               
               
               Cow position:chr14:9030125-9030286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr14:14466621-14466451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr14:18306031-18306223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:232-417
               
               
               Cow position:chr14:20483866-20483675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:232-417
               
               
               Cow position:chr14:27653000-27653187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:232-417
               
               
               Cow position:chr14:38286146-38285946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:232-418
               
               
               Cow position:chr14:24845818-24845991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:232-422
               
               
               Cow position:chr14:19827633-19827456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:232-431
               
               
               Cow position:chr14:41156881-41156686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-442
               
               
               Cow position:chr14:8101636-8101839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):187, 68

               
               
               Conread position:232-442
               
               
               Cow position:chr14:11576908-11577117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):138, 121

               
               
               Conread position:232-442
               
               
               Cow position:chr14:18301795-18302010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:232-443
               
               
               Cow position:chr14:21535464-21535256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):187, 91

               
               
               Conread position:232-451
               
               
               Cow position:chr14:7019951-7019727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:232-469
               
               
               Cow position:chr14:43868145-43868384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 146

               
               
               Conread position:232-477
               
               
               Cow position:chr14:4848189-4848432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:232-494
               
               
               Cow position:chr14:8786698-8786445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):187, 70

               
               
               Conread position:232-494
               
               
               Cow position:chr14:20640790-20640520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:232-494
               
               
               Cow position:chr14:23424104-23424364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):184, 67

               
               
               Conread position:232-494
               
               
               Cow position:chr14:24945655-24945382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr14:25225571-25225838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):180, 31

               
               
               Conread position:232-494
               
               
               Cow position:chr14:30760055-30760326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:232-494
               
               
               Cow position:chr14:47510809-47511064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):187, 31

               
               
               Conread position:232-494
               
               
               Cow position:chr14:49807013-49807276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:232-496
               
               
               Cow position:chr14:47170511-47170245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):212, 88

               
               
               Conread position:233-389
               
               
               Cow position:chr14:20667165-20667013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-391
               
               
               Cow position:chr14:19355132-19355284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-392
               
               
               Cow position:chr14:19852096-19851935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:233-392
               
               
               Cow position:chr14:24428864-24428709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:233-394
               
               
               Cow position:chr14:11604724-11604882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:233-398
               
               
               Cow position:chr14:41871749-41871583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:233-399
               
               
               Cow position:chr14:24746296-24746472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr14:42546719-42546548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:233-413
               
               
               Cow position:chr14:47224532-47224347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 174

               
               
               Conread position:233-414
               
               
               Cow position:chr14:44153148-44152956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr14:7316632-7316817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:233-417
               
               
               Cow position:chr14:20070901-20071094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:233-417
               
               
               Cow position:chr14:24712792-24712601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr14:22941900-22941679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr14:27733448-27733651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-450
               
               
               Cow position:chr14:17755416-17755625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):166, 47

               
               
               Conread position:233-494
               
               
               Cow position:chr14:4877387-4877125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 73

               
               
               Conread position:233-494
               
               
               Cow position:chr14:14949374-14949106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 114

               
               
               Conread position:233-494
               
               
               Cow position:chr14:26442506-26442233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):70, 172

               
               
               Conread position:233-494
               
               
               Cow position:chr14:45677071-45677339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):96, 66

               
               
               Conread position:234-385
               
               
               Cow position:chr14:24754791-24754947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr14:39996450-39996608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 111

               
               
               Conread position:234-399
               
               
               Cow position:chr14:3923757-3923913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr14:10838704-10838869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:234-399
               
               
               Cow position:chr14:27609019-27609176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:234-409
               
               
               Cow position:chr14:20010667-20010490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-410
               
               
               Cow position:chr14:37966782-37966959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:234-416
               
               
               Cow position:chr14:46431908-46432092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 147

               
               
               Conread position:234-417
               
               
               Cow position:chr14:18412753-18412568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr14:28957728-28957913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr14:40347801-40347623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:234-424
               
               
               Cow position:chr14:48829895-48829708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:234-427
               
               
               Cow position:chr14:36559385-36559192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):127, 40

               
               
               Conread position:234-441
               
               
               Cow position:chr14:4860338-4860550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:234-442
               
               
               Cow position:chr14:13845835-13846034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):185, 25

               
               
               Conread position:234-442
               
               
               Cow position:chr14:36443176-36442969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):185, 82

               
               
               Conread position:234-442
               
               
               Cow position:chr14:42330187-42330404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:234-492
               
               
               Cow position:chr14:37103048-37103317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr14:8946242-8945977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 81

               
               
               Conread position:234-494
               
               
               Cow position:chr14:15492432-15492703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr14:22988876-22989141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:234-494
               
               
               Cow position:chr14:29964858-29965124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:234-494
               
               
               Cow position:chr14:33791034-33791293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr14:41472136-41471865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr14:41809813-41809549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:235-388
               
               
               Cow position:chr14:16770026-16769871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-390
               
               
               Cow position:chr14:12071685-12071528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:235-391
               
               
               Cow position:chr14:19832551-19832396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 35

               
               
               Conread position:235-392
               
               
               Cow position:chr14:3573613-3573773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-392
               
               
               Cow position:chr14:10940022-10939863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr14:15518561-15518402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:235-392
               
               
               Cow position:chr14:40107270-40107117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:235-397
               
               
               Cow position:chr14:8949493-8949653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:235-399
               
               
               Cow position:chr14:40952104-40952276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:235-404
               
               
               Cow position:chr14:19988220-19988049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:235-413
               
               
               Cow position:chr14:29282594-29282774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr14:1771118-1770941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:235-414
               
               
               Cow position:chr14:2937483-2937664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr14:8027725-8027540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 132

               
               
               Conread position:235-414
               
               
               Cow position:chr14:23237824-23237650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr14:27330574-27330756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:235-414
               
               
               Cow position:chr14:37152093-37151920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-416
               
               
               Cow position:chr14:14327283-14327094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:235-417
               
               
               Cow position:chr14:11079297-11079475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr14:41623168-41623341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:235-442
               
               
               Cow position:chr14:7127702-7127907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:235-442
               
               
               Cow position:chr14:20466778-20466979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr14:20577104-20576900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:235-444
               
               
               Cow position:chr14:16287326-16287533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:235-445
               
               
               Cow position:chr14:20234350-20234141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:235-469
               
               
               Cow position:chr14:6360235-6360483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:235-485
               
               
               Cow position:chr14:7198337-7198600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-490
               
               
               Cow position:chr14:11643404-11643153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 71

               
               
               Conread position:235-490
               
               
               Cow position:chr14:12512049-12511798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):211, 81

               
               
               Conread position:235-490
               
               
               Cow position:chr14:23104154-23103893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-490
               
               
               Cow position:chr14:28304945-28304681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-493
               
               
               Cow position:chr14:47252391-47252119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr14:12073114-12072843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:235-494
               
               
               Cow position:chr14:27394622-27394356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 77

               
               
               Conread position:235-494
               
               
               Cow position:chr14:28987531-28987802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 180

               
               
               Conread position:235-494
               
               
               Cow position:chr14:36254848-36254600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:235-494
               
               
               Cow position:chr14:38747521-38747773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):184, 28

               
               
               Conread position:235-494
               
               
               Cow position:chr14:48447323-48447057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:235-496
               
               
               Cow position:chr14:19321668-19321397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 101

               
               
               Conread position:236-417
               
               
               Cow position:chr14:16237668-16237489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:237-355
               
               
               Cow position:chr14:12961119-12961002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:237-392
               
               
               Cow position:chr14:9052407-9052253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:238-417
               
               
               Cow position:chr14:24785504-24785681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:238-424
               
               
               Cow position:chr14:13928427-13928600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):181, 76

               
               
               Conread position:238-439
               
               
               Cow position:chr14:34140347-34140147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 181

               
               
               Conread position:238-444
               
               
               Cow position:chr14:30756686-30756894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 158

               
               
               Conread position:238-494
               
               
               Cow position:chr14:5630013-5630268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):181, 76

               
               
               Conread position:239-397
               
               
               Cow position:chr14:8036178-8036326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:239-397
               
               
               Cow position:chr14:24880750-24880603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:239-494
               
               
               Cow position:chr14:15504311-15504047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:239-494
               
               
               Cow position:chr14:16550148-16549897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:239-494
               
               
               Cow position:chr14:19359715-19360002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:239-494
               
               
               Cow position:chr14:25227993-25228245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:240-349
               
               
               Cow position:chr14:34125623-34125514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):78, 105

               
               
               Conread position:240-370
               
               
               Cow position:chr14:10693745-10693620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-408
               
               
               Cow position:chr14:33618155-33618317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-415
               
               
               Cow position:chr14:20915134-20914956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr14:4481521-4481694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:240-417
               
               
               Cow position:chr14:5668274-5668095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-434
               
               
               Cow position:chr14:23090534-23090338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:240-438
               
               
               Cow position:chr14:21557178-21556981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):179, 122

               
               
               Conread position:240-442
               
               
               Cow position:chr14:11470303-11470102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:240-442
               
               
               Cow position:chr14:11729260-11729061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-442
               
               
               Cow position:chr14:40754397-40754198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-445
               
               
               Cow position:chr14:34775902-34775694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:240-456
               
               
               Cow position:chr14:25979117-25979341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:240-467
               
               
               Cow position:chr14:10609526-10609757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:240-469
               
               
               Cow position:chr14:12884111-12884337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:240-484
               
               
               Cow position:chr14:20110875-20110623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:240-492
               
               
               Cow position:chr14:3194720-3194959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):201, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr14:1796044-1796297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):201, 38

               
               
               Conread position:240-494
               
               
               Cow position:chr14:1803272-1803008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:240-494
               
               
               Cow position:chr14:4282663-4282401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:240-494
               
               
               Cow position:chr14:10078101-10078376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 253

               
               
               Conread position:240-494
               
               
               Cow position:chr14:12036982-12036738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-494
               
               
               Cow position:chr14:12081279-12081031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:240-494
               
               
               Cow position:chr14:24981300-24981561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:240-495
               
               
               Cow position:chr14:26655290-26655027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:241-382
               
               
               Cow position:chr14:29592868-29592724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-414
               
               
               Cow position:chr14:35651932-35651765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):100, 79

               
               
               Conread position:241-417
               
               
               Cow position:chr14:45045444-45045620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:241-430
               
               
               Cow position:chr14:41191250-41191058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:241-440
               
               
               Cow position:chr14:10706726-10706922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr14:1708811-1708607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:241-442
               
               
               Cow position:chr14:11567261-11567454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:241-442
               
               
               Cow position:chr14:12142068-12141856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 96

               
               
               Conread position:241-442
               
               
               Cow position:chr14:18941440-18941237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):72, 136

               
               
               Conread position:241-444
               
               
               Cow position:chr14:23419641-23419849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-466
               
               
               Cow position:chr14:32452099-32452324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:241-488
               
               
               Cow position:chr14:35503211-35503465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:241-490
               
               
               Cow position:chr14:42419431-42419171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:241-494
               
               
               Cow position:chr14:28115343-28115079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:241-494
               
               
               Cow position:chr14:48426920-48427180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:242-391
               
               
               Cow position:chr14:24991346-24991483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr14:19594286-19594088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 55

               
               
               Conread position:242-442
               
               
               Cow position:chr14:45312645-45312841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:242-490
               
               
               Cow position:chr14:28378206-28378463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:242-493
               
               
               Cow position:chr14:50362641-50362901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:242-494
               
               
               Cow position:chr14:39770372-39770126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:243-496
               
               
               Cow position:chr14:39918886-39918650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):173, 45

               
               
               Conread position:244-399
               
               
               Cow position:chr14:445147-445292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:244-485
               
               
               Cow position:chr14:23962705-23962950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:244-494
               
               
               Cow position:chr14:4203241-4202987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):175, 15

               
               
               Conread position:244-494
               
               
               Cow position:chr14:7695115-7695374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:244-494
               
               
               Cow position:chr14:16524320-16524583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):125, 14

               
               
               Conread position:245-438
               
               
               Cow position:chr14:7108354-7108547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:246-423
               
               
               Cow position:chr14:11472378-11472199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:246-494
               
               
               Cow position:chr14:48689381-48689630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 51

               
               
               Conread position:247-396
               
               
               Cow position:chr14:19772420-19772273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:247-404
               
               
               Cow position:chr14:15228398-15228550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr14:38674076-38673897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:247-480
               
               
               Cow position:chr14:48496293-48496054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 130

               
               
               Conread position:248-406
               
               
               Cow position:chr14:20035573-20035734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 103

               
               
               Conread position:248-407
               
               
               Cow position:chr14:20513082-20513243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:248-413
               
               
               Cow position:chr14:11280258-11280094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:248-442
               
               
               Cow position:chr14:18351012-18350808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-454
               
               
               Cow position:chr14:42246859-42247071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:248-463
               
               
               Cow position:chr14:7872667-7872888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:248-490
               
               
               Cow position:chr14:41838004-41837769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):171, 39

               
               
               Conread position:248-493
               
               
               Cow position:chr14:16760254-16760508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:248-494
               
               
               Cow position:chr14:12520449-12520198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:248-494
               
               
               Cow position:chr14:26433394-26433133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):55, 231

               
               
               Conread position:249-414
               
               
               Cow position:chr14:27848035-27848205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:249-483
               
               
               Cow position:chr14:25381296-25381517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):192, 42

               
               
               Conread position:250-395
               
               
               Cow position:chr14:22231051-22230907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:250-450
               
               
               Cow position:chr14:26941364-26941168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:250-494
               
               
               Cow position:chr14:40165286-40165530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:251-414
               
               
               Cow position:chr14:44751168-44751007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:251-493
               
               
               Cow position:chr14:12127539-12127306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):168, 64

               
               
               Conread position:252-431
               
               
               Cow position:chr14:12763848-12763670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):167, 92

               
               
               Conread position:252-494
               
               
               Cow position:chr14:1646325-1646085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:255-390
               
               
               Cow position:chr14:25277634-25277766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:255-418
               
               
               Cow position:chr14:42422950-42423115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:259-428
               
               
               Cow position:chr14:3173860-3173702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):160, 49

               
               
               Conread position:261-494
               
               
               Cow position:chr14:11285447-11285682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:262-492
               
               
               Cow position:chr14:2038924-2038710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):157, 51

               
               
               Conread position:262-494
               
               
               Cow position:chr14:33300563-33300809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:263-442
               
               
               Cow position:chr14:40191464-40191634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):156, 48

               
               
               Conread position:266-494
               
               
               Cow position:chr14:41127779-41128001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:267-417
               
               
               Cow position:chr14:12924180-12924321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:267-442
               
               
               Cow position:chr14:1431950-1431783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:268-493
               
               
               Cow position:chr14:2959395-2959618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 181

               
               
               Conread position:269-493
               
               
               Cow position:chr14:19188926-19189148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:273-494
               
               
               Cow position:chr14:19618872-19618644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:274-397
               
               
               Cow position:chr14:31893461-31893582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:274-406
               
               
               Cow position:chr14:42153524-42153392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-492
               
               
               Cow position:chr14:37447587-37447363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:276-427
               
               
               Cow position:chr14:24806479-24806627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:284-442
               
               
               Cow position:chr14:40287481-40287641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:288-443
               
               
               Cow position:chr14:15491047-15491206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:288-494
               
               
               Cow position:chr14:21538541-21538343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:298-493
               
               
               Cow position:chr14:15055087-15054883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 170

               
               
               Conread position:298-494
               
               
               Cow position:chr14:5557218-5557012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:301-406
               
               
               Cow position:chr14:33758276-33758382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:302-487
               
               
               Cow position:chr14:34096659-34096471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:302-494
               
               
               Cow position:chr14:10631212-10631016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr14:26097783-26097585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr14:33830210-33830403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 97

               
               
               Conread position:302-494
               
               
               Cow position:chr14:34983775-34983970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 181

               
               
               Conread position:302-494
               
               
               Cow position:chr14:42436933-42437132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):142, 117

               
               
               Conread position:303-494
               
               
               Cow position:chr14:38338222-38338038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:304-490
               
               
               Cow position:chr14:19129416-19129612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:306-490
               
               
               Cow position:chr14:14316799-14316985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):134, 102

               
               
               Conread position:307-489
               
               
               Cow position:chr14:37131575-37131757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:308-494
               
               
               Cow position:chr14:4990916-4991112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:308-494
               
               
               Cow position:chr14:19372253-19372448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):110, 165

               
               
               Conread position:313-494
               
               
               Cow position:chr14:45362301-45362122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:314-494
               
               
               Cow position:chr14:9308149-9308337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 182

               
               
               Conread position:318-496
               
               
               Cow position:chr14:35018829-35018642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:319-494
               
               
               Cow position:chr14:19863509-19863326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:324-490
               
               
               Cow position:chr14:33309573-33309404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:326-494
               
               
               Cow position:chr14:39778684-39778862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:328-494
               
               
               Cow position:chr14:29698427-29698249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:358-494
               
               
               Cow position:chr14:2345031-2345176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:358-494
               
               
               Cow position:chr14:42480253-42480112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:205-490
               
               
               Cow position:chr15:6905400-6905684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):151, 35

               
               
               Conread position:212-395
               
               
               Cow position:chr15:29292092-29291907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:212-397
               
               
               Cow position:chr15:20565991-20566181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:212-442
               
               
               Cow position:chr15:16112260-16112496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):90, 155

               
               
               Conread position:213-493
               
               
               Cow position:chr15:17870425-17870133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:214-494
               
               
               Cow position:chr15:39598113-39598396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 92

               
               
               Conread position:216-365
               
               
               Cow position:chr15:36539814-36539962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):141, 102

               
               
               Conread position:216-397
               
               
               Cow position:chr15:36457746-36457574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:216-399
               
               
               Cow position:chr15:24124596-24124785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:216-414
               
               
               Cow position:chr15:19976413-19976618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:216-442
               
               
               Cow position:chr15:20534581-20534354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:217-377
               
               
               Cow position:chr15:1500701-1500858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:217-377
               
               
               Cow position:chr15:1508227-1508384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:217-377
               
               
               Cow position:chr15:2378314-2378471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:217-492
               
               
               Cow position:chr15:1502784-1503057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):181, 89

               
               
               Conread position:217-492
               
               
               Cow position:chr15:2380236-2380508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):233, 89

               
               
               Conread position:217-494
               
               
               Cow position:chr15:3700413-3700132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:219-494
               
               
               Cow position:chr15:14888765-14888487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:220-397
               
               
               Cow position:chr15:37719714-37719542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):121, 88

               
               
               Conread position:220-434
               
               
               Cow position:chr15:21520017-21520238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:221-493
               
               
               Cow position:chr15:37644862-37645140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:222-340
               
               
               Cow position:chr15:42142749-42142869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:222-355
               
               
               Cow position:chr15:25010152-25010024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:222-389
               
               
               Cow position:chr15:26380871-26380702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 141

               
               
               Conread position:222-414
               
               
               Cow position:chr15:17124594-17124401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:222-417
               
               
               Cow position:chr15:52791816-52792007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):100, 133

               
               
               Conread position:222-427
               
               
               Cow position:chr15:25451877-25452091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):80, 147

               
               
               Conread position:222-440
               
               
               Cow position:chr15:17100831-17100616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:222-442
               
               
               Cow position:chr15:225928-225708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:222-442
               
               
               Cow position:chr15:42380805-42381024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:222-444
               
               
               Cow position:chr15:8641983-8642215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 196

               
               
               Conread position:222-470
               
               
               Cow position:chr15:6037570-6037325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):197, 77

               
               
               Conread position:222-490
               
               
               Cow position:chr15:21420823-21421088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:222-494
               
               
               Cow position:chr15:22531549-22531815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):222, 84

               
               
               Conread position:222-494
               
               
               Cow position:chr15:25667349-25667069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:223-393
               
               
               Cow position:chr15:27656976-27657151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:223-406
               
               
               Cow position:chr15:44119592-44119408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):91, 56

               
               
               Conread position:223-417
               
               
               Cow position:chr15:42190317-42190515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:223-417
               
               
               Cow position:chr15:44809942-44810139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:223-417
               
               
               Cow position:chr15:46284040-46283847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:223-442
               
               
               Cow position:chr15:37381505-37381720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:223-494
               
               
               Cow position:chr15:1083494-1083222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:223-494
               
               
               Cow position:chr15:16822827-16823091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):196, 39

               
               
               Conread position:223-494
               
               
               Cow position:chr15:36435076-36435358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:224-406
               
               
               Cow position:chr15:36643968-36643790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:224-424
               
               
               Cow position:chr15:28823935-28823744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:224-494
               
               
               Cow position:chr15:26919391-26919122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):192, 62

               
               
               Conread position:224-494
               
               
               Cow position:chr15:36952321-36952046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):195, 43

               
               
               Conread position:225-426
               
               
               Cow position:chr15:12314445-12314638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:225-442
               
               
               Cow position:chr15:4248027-4248244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):194, 97

               
               
               Conread position:225-442
               
               
               Cow position:chr15:50332854-50333076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 175

               
               
               Conread position:225-481
               
               
               Cow position:chr15:34896641-34896902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:225-490
               
               
               Cow position:chr15:38827436-38827175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):191, 81

               
               
               Conread position:225-490
               
               
               Cow position:chr15:49273841-49274101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):139, 81

               
               
               Conread position:225-494
               
               
               Cow position:chr15:25208880-25208609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:226-399
               
               
               Cow position:chr15:7429846-7430022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-419
               
               
               Cow position:chr15:52629237-52629052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:226-468
               
               
               Cow position:chr15:30986406-30986176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):193, 77

               
               
               Conread position:226-494
               
               
               Cow position:chr15:34207328-34207036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:227-313
               
               
               Cow position:chr15:5273314-5273400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-342
               
               
               Cow position:chr15:19523865-19523978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-363
               
               
               Cow position:chr15:29354094-29353959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:227-367
               
               
               Cow position:chr15:43008046-43007907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr15:50350724-50350892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:227-391
               
               
               Cow position:chr15:14760759-14760593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-397
               
               
               Cow position:chr15:40562802-40562632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 118

               
               
               Conread position:227-398
               
               
               Cow position:chr15:53681312-53681141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:227-399
               
               
               Cow position:chr15:11072317-11072148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:227-399
               
               
               Cow position:chr15:38883028-38883201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:227-404
               
               
               Cow position:chr15:18704052-18703878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):106, 75

               
               
               Conread position:227-405
               
               
               Cow position:chr15:26849651-26849479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr15:13846684-13846509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:227-412
               
               
               Cow position:chr15:11909065-11908886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-413
               
               
               Cow position:chr15:38752825-38752998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr15:9921886-9921701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:227-414
               
               
               Cow position:chr15:44058306-44058117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:227-417
               
               
               Cow position:chr15:8623994-8624198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:227-417
               
               
               Cow position:chr15:9314607-9314796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:227-417
               
               
               Cow position:chr15:12357486-12357687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr15:41321071-41320883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:227-417
               
               
               Cow position:chr15:48052717-48052534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:227-417
               
               
               Cow position:chr15:53028243-53028433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-422
               
               
               Cow position:chr15:52747407-52747598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:227-430
               
               
               Cow position:chr15:28098993-28099196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-431
               
               
               Cow position:chr15:10153552-10153750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:227-431
               
               
               Cow position:chr15:35577074-35577288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-431
               
               
               Cow position:chr15:41534538-41534735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:227-442
               
               
               Cow position:chr15:4418521-4418304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):83, 108

               
               
               Conread position:227-442
               
               
               Cow position:chr15:4919189-4918973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 137

               
               
               Conread position:227-442
               
               
               Cow position:chr15:21822047-21821828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr15:31495337-31495127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):192, 75

               
               
               Conread position:227-442
               
               
               Cow position:chr15:33178545-33178331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:227-442
               
               
               Cow position:chr15:38820581-38820791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:227-445
               
               
               Cow position:chr15:6227295-6227083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:227-448
               
               
               Cow position:chr15:3591283-3591492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:227-465
               
               
               Cow position:chr15:20390829-20390595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:227-469
               
               
               Cow position:chr15:19554046-19553800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 223

               
               
               Conread position:227-490
               
               
               Cow position:chr15:286353-286631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-490
               
               
               Cow position:chr15:2968215-2968487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 195

               
               
               Conread position:227-490
               
               
               Cow position:chr15:34284526-34284261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:227-492
               
               
               Cow position:chr15:36353547-36353822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:227-494
               
               
               Cow position:chr15:608024-608298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:227-494
               
               
               Cow position:chr15:1722960-1722695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):188, 76

               
               
               Conread position:227-494
               
               
               Cow position:chr15:1804458-1804182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:227-494
               
               
               Cow position:chr15:3695518-3695788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr15:4138017-4138286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:227-494
               
               
               Cow position:chr15:4694632-4694899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):192, 28

               
               
               Conread position:227-494
               
               
               Cow position:chr15:5072217-5071945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):76, 147

               
               
               Conread position:227-494
               
               
               Cow position:chr15:5235110-5234848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):216, 51

               
               
               Conread position:227-494
               
               
               Cow position:chr15:11996145-11995873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr15:12304521-12304795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr15:13284915-13285172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:227-494
               
               
               Cow position:chr15:17084087-17084369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 136

               
               
               Conread position:227-494
               
               
               Cow position:chr15:19950367-19950629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):192, 52

               
               
               Conread position:227-494
               
               
               Cow position:chr15:20487319-20487052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr15:21893660-21893935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:227-494
               
               
               Cow position:chr15:22530962-22531219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:227-494
               
               
               Cow position:chr15:36391552-36391828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:227-494
               
               
               Cow position:chr15:36846306-36846021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 185

               
               
               Conread position:227-494
               
               
               Cow position:chr15:44658247-44658510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:228-310
               
               
               Cow position:chr15:17653339-17653257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-361
               
               
               Cow position:chr15:52728574-52728435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-390
               
               
               Cow position:chr15:22463522-22463689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:228-396
               
               
               Cow position:chr15:10199216-10199378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr15:36621283-36621449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:228-411
               
               
               Cow position:chr15:18763158-18762975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):79, 155

               
               
               Conread position:228-494
               
               
               Cow position:chr15:40231000-40231270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 235

               
               
               Conread position:228-494
               
               
               Cow position:chr15:41528084-41527823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):218, 47

               
               
               Conread position:228-494
               
               
               Cow position:chr15:50322493-50322749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):191, 55

               
               
               Conread position:229-399
               
               
               Cow position:chr15:33751219-33751052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:229-411
               
               
               Cow position:chr15:41625013-41624830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:229-417
               
               
               Cow position:chr15:45245658-45245474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:229-417
               
               
               Cow position:chr15:45478882-45479072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:229-428
               
               
               Cow position:chr15:4500581-4500785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:229-442
               
               
               Cow position:chr15:25349857-25350065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:229-443
               
               
               Cow position:chr15:19402888-19403090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:229-480
               
               
               Cow position:chr15:39286528-39286271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:229-493
               
               
               Cow position:chr15:24994628-24994361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:229-494
               
               
               Cow position:chr15:21803782-21803507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:229-494
               
               
               Cow position:chr15:31137582-31137312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 104

               
               
               Conread position:230-316
               
               
               Cow position:chr15:10737896-10737810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-342
               
               
               Cow position:chr15:15147324-15147209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-353
               
               
               Cow position:chr15:52969493-52969613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-354
               
               
               Cow position:chr15:36904186-36904313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:230-365
               
               
               Cow position:chr15:44051597-44051464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-387
               
               
               Cow position:chr15:16958012-16958180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:230-391
               
               
               Cow position:chr15:12034811-12034641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr15:27555770-27555605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:230-398
               
               
               Cow position:chr15:32022433-32022266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:230-399
               
               
               Cow position:chr15:40494590-40494420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:230-404
               
               
               Cow position:chr15:840263-840091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr15:36649854-36649673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr15:43634146-43633975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:230-407
               
               
               Cow position:chr15:33897706-33897884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:230-411
               
               
               Cow position:chr15:9883857-9883674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:230-414
               
               
               Cow position:chr15:18941918-18942096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr15:33784940-33784751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:230-416
               
               
               Cow position:chr15:41049573-41049394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:230-417
               
               
               Cow position:chr15:697863-698052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr15:7479115-7478926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:230-417
               
               
               Cow position:chr15:8679875-8679686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr15:17140133-17139953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr15:17853834-17853652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr15:25877324-25877512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:230-423
               
               
               Cow position:chr15:28924878-28924678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:230-424
               
               
               Cow position:chr15:24453190-24452996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:230-424
               
               
               Cow position:chr15:44089281-44089087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-426
               
               
               Cow position:chr15:14964276-14964087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-429
               
               
               Cow position:chr15:4735742-4735554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:230-431
               
               
               Cow position:chr15:40834999-40835198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-438
               
               
               Cow position:chr15:15154183-15154392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:230-438
               
               
               Cow position:chr15:45574744-45574545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr15:795133-794925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr15:6138430-6138632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr15:7956199-7955976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:230-442
               
               
               Cow position:chr15:22444103-22443892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr15:23798638-23798434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):189, 82

               
               
               Conread position:230-442
               
               
               Cow position:chr15:26529780-26529986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):189, 20

               
               
               Conread position:230-442
               
               
               Cow position:chr15:31028776-31028561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr15:50660486-50660720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-460
               
               
               Cow position:chr15:26896815-26896580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-469
               
               
               Cow position:chr15:22930466-22930228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:230-469
               
               
               Cow position:chr15:49483510-49483751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:230-479
               
               
               Cow position:chr15:36388183-36388431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):189, 31

               
               
               Conread position:230-485
               
               
               Cow position:chr15:45545-45272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:230-485
               
               
               Cow position:chr15:31024869-31025136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 196

               
               
               Conread position:230-487
               
               
               Cow position:chr15:14505328-14505573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:230-488
               
               
               Cow position:chr15:27900621-27900361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:230-488
               
               
               Cow position:chr15:52126806-52126544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):127, 87

               
               
               Conread position:230-489
               
               
               Cow position:chr15:6462609-6462349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):189, 113

               
               
               Conread position:230-490
               
               
               Cow position:chr15:5409010-5408755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):186, 76

               
               
               Conread position:230-493
               
               
               Cow position:chr15:23180325-23180589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:230-494
               
               
               Cow position:chr15:4295644-4295919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:230-494
               
               
               Cow position:chr15:6969873-6970142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:230-494
               
               
               Cow position:chr15:10442627-10442350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr15:16603714-16603976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):181, 24

               
               
               Conread position:230-494
               
               
               Cow position:chr15:19807839-19807564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr15:20472660-20472392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:230-494
               
               
               Cow position:chr15:21941964-21941690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:230-494
               
               
               Cow position:chr15:25571927-25571654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:230-494
               
               
               Cow position:chr15:32980150-32979886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:230-494
               
               
               Cow position:chr15:36887723-36887979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr15:39299433-39299167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:230-494
               
               
               Cow position:chr15:39405626-39405891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:230-494
               
               
               Cow position:chr15:43914214-43913937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr15:47042762-47042474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr15:53037078-53036814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):193, 84

               
               
               Conread position:230-495
               
               
               Cow position:chr15:35425908-35425659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):213, 74

               
               
               Conread position:231-375
               
               
               Cow position:chr15:49959422-49959559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:231-379
               
               
               Cow position:chr15:9128782-9128639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:231-381
               
               
               Cow position:chr15:5727352-5727500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:231-389
               
               
               Cow position:chr15:6332577-6332422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:231-397
               
               
               Cow position:chr15:40844736-40844570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr15:8665722-8665548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:231-411
               
               
               Cow position:chr15:8331312-8331138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:231-411
               
               
               Cow position:chr15:10785905-10786077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):169, 37

               
               
               Conread position:231-414
               
               
               Cow position:chr15:35641897-35642081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):79, 132

               
               
               Conread position:231-422
               
               
               Cow position:chr15:22984449-22984652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:231-438
               
               
               Cow position:chr15:2931686-2931474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:231-440
               
               
               Cow position:chr15:30001581-30001788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):188, 92

               
               
               Conread position:231-442
               
               
               Cow position:chr15:5158256-5158470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr15:8636409-8636197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:231-451
               
               
               Cow position:chr15:40082873-40083096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 85

               
               
               Conread position:231-464
               
               
               Cow position:chr15:21903522-21903294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-478
               
               
               Cow position:chr15:20370567-20370320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-490
               
               
               Cow position:chr15:43626349-43626617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:231-490
               
               
               Cow position:chr15:52316945-52317208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 71

               
               
               Conread position:231-493
               
               
               Cow position:chr15:20723095-20722836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):188, 16

               
               
               Conread position:231-494
               
               
               Cow position:chr15:4076216-4076478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):188, 68

               
               
               Conread position:231-494
               
               
               Cow position:chr15:4862022-4861762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 206

               
               
               Conread position:231-494
               
               
               Cow position:chr15:5717604-5717866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:231-494
               
               
               Cow position:chr15:14987880-14988145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 85

               
               
               Conread position:231-494
               
               
               Cow position:chr15:22553656-22553385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):184, 92

               
               
               Conread position:231-494
               
               
               Cow position:chr15:24982291-24982039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:231-494
               
               
               Cow position:chr15:26912183-26911923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):212, 32

               
               
               Conread position:231-494
               
               
               Cow position:chr15:41056324-41056051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr15:41125672-41125417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:231-494
               
               
               Cow position:chr15:49922020-49922289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:232-351
               
               
               Cow position:chr15:16492340-16492459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):80, 93

               
               
               Conread position:232-380
               
               
               Cow position:chr15:47920261-47920117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:232-385
               
               
               Cow position:chr15:258430-258580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:232-389
               
               
               Cow position:chr15:52997118-52996957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr15:5522833-5523009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr15:49230427-49230265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-404
               
               
               Cow position:chr15:17371426-17371597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):104, 71

               
               
               Conread position:232-417
               
               
               Cow position:chr15:12913614-12913428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:232-424
               
               
               Cow position:chr15:38196191-38196002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:232-432
               
               
               Cow position:chr15:43715216-43715413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):168, 82

               
               
               Conread position:232-439
               
               
               Cow position:chr15:34223753-34223959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:232-441
               
               
               Cow position:chr15:17650769-17650566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:232-442
               
               
               Cow position:chr15:19002397-19002180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:232-442
               
               
               Cow position:chr15:31637181-31637397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr15:43114832-43114631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):109, 88

               
               
               Conread position:232-456
               
               
               Cow position:chr15:30983908-30983700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):184, 36

               
               
               Conread position:232-490
               
               
               Cow position:chr15:20459425-20459155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-490
               
               
               Cow position:chr15:28047875-28047605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:232-490
               
               
               Cow position:chr15:34139870-34140135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:232-494
               
               
               Cow position:chr15:12722970-12723240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):70, 194

               
               
               Conread position:232-494
               
               
               Cow position:chr15:13395434-13395704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:232-494
               
               
               Cow position:chr15:30471093-30470816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr15:36773795-36773546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:232-494
               
               
               Cow position:chr15:40957464-40957732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:232-494
               
               
               Cow position:chr15:45584608-45584879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 186

               
               
               Conread position:233-316
               
               
               Cow position:chr15:16911913-16911830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-361
               
               
               Cow position:chr15:6219934-6219811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-382
               
               
               Cow position:chr15:28549795-28549644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr15:34145367-34145203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:233-413
               
               
               Cow position:chr15:47773593-47773426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr15:13674297-13674119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:233-417
               
               
               Cow position:chr15:14576219-14576398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:233-420
               
               
               Cow position:chr15:46059243-46059435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 125

               
               
               Conread position:233-424
               
               
               Cow position:chr15:12974221-12974417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:233-431
               
               
               Cow position:chr15:15992754-15992558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:233-436
               
               
               Cow position:chr15:41475940-41475740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):186, 78

               
               
               Conread position:233-442
               
               
               Cow position:chr15:4485035-4485250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr15:14281422-14281645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:233-478
               
               
               Cow position:chr15:26753101-26752857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 121

               
               
               Conread position:233-493
               
               
               Cow position:chr15:49131946-49132200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:233-494
               
               
               Cow position:chr15:7456604-7456851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):186, 74

               
               
               Conread position:233-494
               
               
               Cow position:chr15:16928202-16927943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):186, 19

               
               
               Conread position:233-494
               
               
               Cow position:chr15:22938880-22938609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 132

               
               
               Conread position:234-387
               
               
               Cow position:chr15:14883563-14883713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:234-397
               
               
               Cow position:chr15:19771025-19771186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr15:30956436-30956273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:234-399
               
               
               Cow position:chr15:33729773-33729945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr15:25788279-25788447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr15:43674058-43673880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:234-427
               
               
               Cow position:chr15:20290170-20289981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):185, 65

               
               
               Conread position:234-436
               
               
               Cow position:chr15:25358121-25358325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:234-442
               
               
               Cow position:chr15:20856591-20856380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr15:22939436-22939229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):193, 66

               
               
               Conread position:234-442
               
               
               Cow position:chr15:30981842-30982035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):185, 11

               
               
               Conread position:234-448
               
               
               Cow position:chr15:39474047-39473832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:234-479
               
               
               Cow position:chr15:46563589-46563347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-480
               
               
               Cow position:chr15:38837634-38837887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:234-494
               
               
               Cow position:chr15:5719917-5719654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:234-494
               
               
               Cow position:chr15:11987521-11987258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 90

               
               
               Conread position:234-494
               
               
               Cow position:chr15:14870643-14870897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):185, 59

               
               
               Conread position:234-494
               
               
               Cow position:chr15:26522936-26522681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:234-494
               
               
               Cow position:chr15:33693484-33693209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr15:36259709-36259449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):185, 60

               
               
               Conread position:235-370
               
               
               Cow position:chr15:51558293-51558425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 89

               
               
               Conread position:235-379
               
               
               Cow position:chr15:19742346-19742493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:235-385
               
               
               Cow position:chr15:20906140-20905994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:235-391
               
               
               Cow position:chr15:7811642-7811485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:235-392
               
               
               Cow position:chr15:4284260-4284419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr15:15680955-15680796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr15:25696410-25696252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:235-393
               
               
               Cow position:chr15:53006046-53005893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr15:848536-848693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr15:17621432-17621259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:235-407
               
               
               Cow position:chr15:21942941-21943115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:235-407
               
               
               Cow position:chr15:48818942-48819105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):150, 63

               
               
               Conread position:235-413
               
               
               Cow position:chr15:20566806-20566978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr15:11320913-11320730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:235-417
               
               
               Cow position:chr15:3026916-3026727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:235-417
               
               
               Cow position:chr15:26617824-26618009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 129

               
               
               Conread position:235-419
               
               
               Cow position:chr15:25366176-25365991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 129

               
               
               Conread position:235-424
               
               
               Cow position:chr15:21710220-21710032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:235-424
               
               
               Cow position:chr15:29927853-29928043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:235-426
               
               
               Cow position:chr15:8715293-8715103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:235-437
               
               
               Cow position:chr15:25595638-25595437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:235-438
               
               
               Cow position:chr15:35419705-35419502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:235-440
               
               
               Cow position:chr15:38420666-38420459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-442
               
               
               Cow position:chr15:4179050-4178848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):187, 80

               
               
               Conread position:235-442
               
               
               Cow position:chr15:9978992-9979196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:235-442
               
               
               Cow position:chr15:10231854-10231654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):181, 71

               
               
               Conread position:235-442
               
               
               Cow position:chr15:18671560-18671360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):184, 38

               
               
               Conread position:235-442
               
               
               Cow position:chr15:36793603-36793398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:235-444
               
               
               Cow position:chr15:38652714-38652503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-448
               
               
               Cow position:chr15:46364663-46364874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:235-468
               
               
               Cow position:chr15:275532-275779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):56, 177

               
               
               Conread position:235-468
               
               
               Cow position:chr15:662575-662348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 71

               
               
               Conread position:235-473
               
               
               Cow position:chr15:29026994-29026753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:235-492
               
               
               Cow position:chr15:24616456-24616723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:235-493
               
               
               Cow position:chr15:9888473-9888726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:235-493
               
               
               Cow position:chr15:19942486-19942752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 82

               
               
               Conread position:235-494
               
               
               Cow position:chr15:1857615-1857880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):181, 51

               
               
               Conread position:235-494
               
               
               Cow position:chr15:10400386-10400117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:235-494
               
               
               Cow position:chr15:15177207-15177468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:235-494
               
               
               Cow position:chr15:20391388-20391121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:235-494
               
               
               Cow position:chr15:21608834-21608571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr15:29810014-29810271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):208, 82

               
               
               Conread position:235-494
               
               
               Cow position:chr15:35839208-35838936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr15:42888946-42888684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:236-384
               
               
               Cow position:chr15:41348260-41348411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:236-494
               
               
               Cow position:chr15:11011703-11011451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):183, 44

               
               
               Conread position:237-387
               
               
               Cow position:chr15:38228026-38228177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 105

               
               
               Conread position:237-446
               
               
               Cow position:chr15:17196036-17196248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:238-399
               
               
               Cow position:chr15:14868654-14868488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:238-406
               
               
               Cow position:chr15:17227036-17226864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 6

               
               
               Conread position:238-443
               
               
               Cow position:chr15:24797911-24797713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):181, 82

               
               
               Conread position:238-467
               
               
               Cow position:chr15:244674-244905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:238-492
               
               
               Cow position:chr15:20047494-20047722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr15:1330217-1329949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 238

               
               
               Conread position:238-494
               
               
               Cow position:chr15:38860240-38859975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):71, 199

               
               
               Conread position:239-491
               
               
               Cow position:chr15:5420990-5420730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:239-494
               
               
               Cow position:chr15:23901484-23901212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:239-494
               
               
               Cow position:chr15:25906810-25907071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:239-494
               
               
               Cow position:chr15:33642985-33643246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:240-369
               
               
               Cow position:chr15:13513428-13513554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-373
               
               
               Cow position:chr15:28206006-28206135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr15:27280531-27280674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:240-388
               
               
               Cow position:chr15:27927038-27927177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:240-392
               
               
               Cow position:chr15:22242296-22242449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:240-392
               
               
               Cow position:chr15:23278396-23278537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:240-396
               
               
               Cow position:chr15:8997184-8997348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr15:43020746-43020579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr15:5710306-5710453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr15:10073850-10074014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:240-399
               
               
               Cow position:chr15:17866410-17866249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:240-399
               
               
               Cow position:chr15:27975979-27975819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:240-399
               
               
               Cow position:chr15:48095250-48095416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 120

               
               
               Conread position:240-405
               
               
               Cow position:chr15:40000820-40000979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:240-410
               
               
               Cow position:chr15:12045647-12045474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:240-414
               
               
               Cow position:chr15:11564193-11564363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:240-426
               
               
               Cow position:chr15:26158705-26158519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:240-430
               
               
               Cow position:chr15:19758940-19759145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr15:5726209-5726421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:240-442
               
               
               Cow position:chr15:13432376-13432581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr15:26442108-26442311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:240-442
               
               
               Cow position:chr15:26851330-26851130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):160, 66

               
               
               Conread position:240-442
               
               
               Cow position:chr15:47844194-47843997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):179, 22

               
               
               Conread position:240-490
               
               
               Cow position:chr15:23572795-23572535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:240-492
               
               
               Cow position:chr15:31929004-31928745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:240-492
               
               
               Cow position:chr15:44377165-44377426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:240-494
               
               
               Cow position:chr15:9879486-9879241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr15:10088213-10088471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:240-494
               
               
               Cow position:chr15:16667604-16667345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:240-494
               
               
               Cow position:chr15:17233080-17233345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 127

               
               
               Conread position:240-494
               
               
               Cow position:chr15:20081668-20081916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:240-494
               
               
               Cow position:chr15:21907838-21908089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:240-494
               
               
               Cow position:chr15:24967695-24967943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr15:30047660-30047389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:240-494
               
               
               Cow position:chr15:43827878-43827620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:240-494
               
               
               Cow position:chr15:51307776-51307526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):179, 61

               
               
               Conread position:240-496
               
               
               Cow position:chr15:32234418-32234175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:240-496
               
               
               Cow position:chr15:53116384-53116642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 164

               
               
               Conread position:241-396
               
               
               Cow position:chr15:16415191-16415346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:241-397
               
               
               Cow position:chr15:49551068-49550907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:241-406
               
               
               Cow position:chr15:18449895-18450057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:241-441
               
               
               Cow position:chr15:7751019-7750817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:241-442
               
               
               Cow position:chr15:32324313-32324112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:241-442
               
               
               Cow position:chr15:44671445-44671239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:241-442
               
               
               Cow position:chr15:49784386-49784189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):178, 76

               
               
               Conread position:241-469
               
               
               Cow position:chr15:53716329-53716563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):175, 94

               
               
               Conread position:241-480
               
               
               Cow position:chr15:12785322-12785565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:241-494
               
               
               Cow position:chr15:21363058-21362805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:242-380
               
               
               Cow position:chr15:14969414-14969546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:242-442
               
               
               Cow position:chr15:30316664-30316471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:242-494
               
               
               Cow position:chr15:85350-85097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:243-494
               
               
               Cow position:chr15:10246098-10245851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 81

               
               
               Conread position:244-430
               
               
               Cow position:chr15:5691000-5691182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:244-432
               
               
               Cow position:chr15:16230127-16230309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):175, 59

               
               
               Conread position:244-442
               
               
               Cow position:chr15:39619040-39619238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:244-485
               
               
               Cow position:chr15:20950150-20950395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 168

               
               
               Conread position:244-494
               
               
               Cow position:chr15:16261228-16261467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 77

               
               
               Conread position:245-390
               
               
               Cow position:chr15:16657369-16657516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:245-490
               
               
               Cow position:chr15:50552635-50552379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:245-494
               
               
               Cow position:chr15:32977947-32977691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:246-494
               
               
               Cow position:chr15:22532153-22532391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 59

               
               
               Conread position:246-496
               
               
               Cow position:chr15:16543538-16543300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):178, 22

               
               
               Conread position:247-398
               
               
               Cow position:chr15:50568080-50568230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:247-425
               
               
               Cow position:chr15:38386487-38386666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:247-431
               
               
               Cow position:chr15:36422519-36422697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:247-442
               
               
               Cow position:chr15:24031097-24031296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:247-494
               
               
               Cow position:chr15:26079445-26079208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):172, 61

               
               
               Conread position:247-494
               
               
               Cow position:chr15:40379113-40379365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):63, 149

               
               
               Conread position:247-496
               
               
               Cow position:chr15:13783067-13782812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:248-355
               
               
               Cow position:chr15:4356950-4357056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:248-407
               
               
               Cow position:chr15:16644886-16644726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:248-431
               
               
               Cow position:chr15:48326326-48326146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:248-442
               
               
               Cow position:chr15:9465576-9465773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:248-490
               
               
               Cow position:chr15:915949-915696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:248-490
               
               
               Cow position:chr15:1297648-1297887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):171, 15

               
               
               Conread position:248-492
               
               
               Cow position:chr15:10049412-10049174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):74, 156

               
               
               Conread position:248-494
               
               
               Cow position:chr15:5657719-5657993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:248-494
               
               
               Cow position:chr15:11559450-11559202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:248-494
               
               
               Cow position:chr15:33306022-33306263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:248-494
               
               
               Cow position:chr15:36776171-36776426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 134

               
               
               Conread position:249-469
               
               
               Cow position:chr15:27063614-27063397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):167, 14

               
               
               Conread position:249-492
               
               
               Cow position:chr15:23275436-23275689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 120

               
               
               Conread position:249-494
               
               
               Cow position:chr15:26903096-26903350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):163, 55

               
               
               Conread position:250-375
               
               
               Cow position:chr15:14572584-14572702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-442
               
               
               Cow position:chr15:921656-921841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:250-494
               
               
               Cow position:chr15:8353945-8354197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):169, 74

               
               
               Conread position:251-494
               
               
               Cow position:chr15:23696997-23696757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):138, 50

               
               
               Conread position:252-494
               
               
               Cow position:chr15:10608403-10608152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:253-442
               
               
               Cow position:chr15:2953226-2953038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:253-442
               
               
               Cow position:chr15:52482922-52482732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:253-442
               
               
               Cow position:chr15:53163927-53164117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:255-469
               
               
               Cow position:chr15:43851678-43851467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 70

               
               
               Conread position:255-494
               
               
               Cow position:chr15:17762817-17763061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:259-414
               
               
               Cow position:chr15:52432251-52432410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:262-382
               
               
               Cow position:chr15:32300290-32300412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:266-442
               
               
               Cow position:chr15:39520077-39520264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:266-490
               
               
               Cow position:chr15:28038708-28038927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):153, 42

               
               
               Conread position:266-494
               
               
               Cow position:chr15:17337289-17337512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):153, 50

               
               
               Conread position:269-493
               
               
               Cow position:chr15:26718994-26718768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):150, 33

               
               
               Conread position:274-397
               
               
               Cow position:chr15:25201846-25201972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:279-444
               
               
               Cow position:chr15:39621264-39621436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:281-399
               
               
               Cow position:chr15:40562520-40562402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:290-440
               
               
               Cow position:chr15:22787782-22787930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:293-442
               
               
               Cow position:chr15:2389638-2389793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:299-494
               
               
               Cow position:chr15:9106986-9107189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:301-494
               
               
               Cow position:chr15:13554306-13554507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:301-494
               
               
               Cow position:chr15:42789194-42788994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr15:22871569-22871705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:302-490
               
               
               Cow position:chr15:29330961-29331153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-493
               
               
               Cow position:chr15:10335709-10335909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:302-495
               
               
               Cow position:chr15:44280057-44280257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-496
               
               
               Cow position:chr15:25650455-25650265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:305-442
               
               
               Cow position:chr15:35441120-35440986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:305-442
               
               
               Cow position:chr15:40594545-40594409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:305-446
               
               
               Cow position:chr15:14261297-14261158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):134, 13

               
               
               Conread position:305-494
               
               
               Cow position:chr15:6530890-6530694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr15:14176541-14176346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:307-442
               
               
               Cow position:chr15:2141343-2141207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr15:10563541-10563347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:308-442
               
               
               Cow position:chr15:18776790-18776655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:308-480
               
               
               Cow position:chr15:32287779-32287616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:312-494
               
               
               Cow position:chr15:9497535-9497346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:314-493
               
               
               Cow position:chr15:12870897-12870712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:316-494
               
               
               Cow position:chr15:22442309-22442119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr15:16908405-16908585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 167

               
               
               Conread position:320-496
               
               
               Cow position:chr15:17162167-17162346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:324-442
               
               
               Cow position:chr15:30794957-30795073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:324-491
               
               
               Cow position:chr15:49257841-49258014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:324-492
               
               
               Cow position:chr15:37284430-37284607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 169

               
               
               Conread position:324-494
               
               
               Cow position:chr15:78552-78727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:324-494
               
               
               Cow position:chr15:16307399-16307566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:324-494
               
               
               Cow position:chr15:44237394-44237572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr15:46868737-46868558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:328-431
               
               
               Cow position:chr15:24953542-24953438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:330-494
               
               
               Cow position:chr15:20351815-20351984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:332-494
               
               
               Cow position:chr15:6905062-6905226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:333-492
               
               
               Cow position:chr15:26404269-26404434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:333-492
               
               
               Cow position:chr15:52809596-52809431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 24

               
               
               Conread position:171-429
               
               
               Cow position:chr16:7912392-7912136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:203-494
               
               
               Cow position:chr16:45731171-45731453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:207-316
               
               
               Cow position:chr16:7550239-7550131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:209-377
               
               
               Cow position:chr16:23054057-23053883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:209-406
               
               
               Cow position:chr16:11765029-11765221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):148, 21

               
               
               Conread position:213-458
               
               
               Cow position:chr16:31484443-31484685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):142, 101

               
               
               Conread position:214-312
               
               
               Cow position:chr16:48340171-48340269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-430
               
               
               Cow position:chr16:12091430-12091657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:214-488
               
               
               Cow position:chr16:30186866-30186585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):74, 65

               
               
               Conread position:217-397
               
               
               Cow position:chr16:44144609-44144428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 9

               
               
               Conread position:217-494
               
               
               Cow position:chr16:51598394-51598670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:218-494
               
               
               Cow position:chr16:15824223-15824509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):53, 146

               
               
               Conread position:220-414
               
               
               Cow position:chr16:20252991-20253189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:220-490
               
               
               Cow position:chr16:55233895-55233623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:220-492
               
               
               Cow position:chr16:23681577-23681301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 98

               
               
               Conread position:221-406
               
               
               Cow position:chr16:8953457-8953652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:221-438
               
               
               Cow position:chr16:29636027-29636233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:221-490
               
               
               Cow position:chr16:43308349-43308622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:221-494
               
               
               Cow position:chr16:14685176-14685454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):26, 6

               
               
               Conread position:222-397
               
               
               Cow position:chr16:29311743-29311563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:222-399
               
               
               Cow position:chr16:5396602-5396779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-417
               
               
               Cow position:chr16:4102629-4102811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr16:52274922-52275135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):197, 19

               
               
               Conread position:222-488
               
               
               Cow position:chr16:35758415-35758146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 57

               
               
               Conread position:222-491
               
               
               Cow position:chr16:8239649-8239929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:222-494
               
               
               Cow position:chr16:26030662-26030949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):135, 118

               
               
               Conread position:223-320
               
               
               Cow position:chr16:20025738-20025642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:223-394
               
               
               Cow position:chr16:21974744-21974921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:223-397
               
               
               Cow position:chr16:33073670-33073841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:223-407
               
               
               Cow position:chr16:56265717-56265530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:223-442
               
               
               Cow position:chr16:15370896-15370678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):196, 97

               
               
               Conread position:223-443
               
               
               Cow position:chr16:280479-280689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):171, 95

               
               
               Conread position:223-494
               
               
               Cow position:chr16:17945754-17945455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 269

               
               
               Conread position:223-494
               
               
               Cow position:chr16:52170267-52169990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:223-496
               
               
               Cow position:chr16:935244-935513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:224-355
               
               
               Cow position:chr16:14210571-14210699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:224-398
               
               
               Cow position:chr16:5120569-5120404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:224-407
               
               
               Cow position:chr16:27326909-27327096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:224-493
               
               
               Cow position:chr16:34153356-34153631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:224-494
               
               
               Cow position:chr16:12320435-12320155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 93

               
               
               Conread position:224-494
               
               
               Cow position:chr16:49125978-49126253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:225-378
               
               
               Cow position:chr16:16697437-16697590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:225-390
               
               
               Cow position:chr16:30054889-30055055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):85, 100

               
               
               Conread position:225-399
               
               
               Cow position:chr16:13791818-13791641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:225-411
               
               
               Cow position:chr16:5382397-5382207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:225-414
               
               
               Cow position:chr16:6343693-6343886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:225-414
               
               
               Cow position:chr16:9615005-9615194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:225-414
               
               
               Cow position:chr16:13995985-13996173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:225-424
               
               
               Cow position:chr16:54585517-54585322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:225-442
               
               
               Cow position:chr16:2223183-2223403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:225-442
               
               
               Cow position:chr16:11003352-11003571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:225-464
               
               
               Cow position:chr16:46548050-46548298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:225-491
               
               
               Cow position:chr16:56358073-56358330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:225-492
               
               
               Cow position:chr16:45294755-45294480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):99, 5

               
               
               Conread position:225-494
               
               
               Cow position:chr16:591592-591875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:225-494
               
               
               Cow position:chr16:40514282-40514545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):191, 85

               
               
               Conread position:225-494
               
               
               Cow position:chr16:42078637-42078905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 81

               
               
               Conread position:225-496
               
               
               Cow position:chr16:11660260-11660513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):194, 19

               
               
               Conread position:226-417
               
               
               Cow position:chr16:18572845-18573034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:226-494
               
               
               Cow position:chr16:40446478-40446189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 141

               
               
               Conread position:226-494
               
               
               Cow position:chr16:45554648-45554378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:227-341
               
               
               Cow position:chr16:12331304-12331188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:227-360
               
               
               Cow position:chr16:33076905-33077036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:227-364
               
               
               Cow position:chr16:41115784-41115918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr16:41654731-41654573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 79

               
               
               Conread position:227-392
               
               
               Cow position:chr16:9018085-9017918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:227-397
               
               
               Cow position:chr16:30580910-30581079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:227-397
               
               
               Cow position:chr16:36922539-36922698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr16:20614705-20614536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:227-399
               
               
               Cow position:chr16:37649813-37649981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:227-399
               
               
               Cow position:chr16:39848796-39848956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 59

               
               
               Conread position:227-405
               
               
               Cow position:chr16:31011537-31011359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:227-410
               
               
               Cow position:chr16:8809888-8810067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):109, 87

               
               
               Conread position:227-411
               
               
               Cow position:chr16:336376-336562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-411
               
               
               Cow position:chr16:33302394-33302210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:227-414
               
               
               Cow position:chr16:4616476-4616660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr16:56595178-56595367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr16:15203148-15203349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:227-417
               
               
               Cow position:chr16:45278747-45278556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 134

               
               
               Conread position:227-417
               
               
               Cow position:chr16:56615293-56615483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):90, 121

               
               
               Conread position:227-423
               
               
               Cow position:chr16:56912478-56912673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:227-424
               
               
               Cow position:chr16:12507050-12507250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-426
               
               
               Cow position:chr16:11019303-11019506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:227-427
               
               
               Cow position:chr16:33430970-33430781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:227-431
               
               
               Cow position:chr16:9513501-9513299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:227-434
               
               
               Cow position:chr16:12251232-12251024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:227-440
               
               
               Cow position:chr16:9836572-9836777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):168, 89

               
               
               Conread position:227-441
               
               
               Cow position:chr16:8522182-8522390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:227-442
               
               
               Cow position:chr16:20476745-20476529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:227-442
               
               
               Cow position:chr16:23472951-23472743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 75

               
               
               Conread position:227-442
               
               
               Cow position:chr16:50933685-50933889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):147, 40

               
               
               Conread position:227-443
               
               
               Cow position:chr16:14376990-14376775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):90, 174

               
               
               Conread position:227-444
               
               
               Cow position:chr16:18047945-18048163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:227-460
               
               
               Cow position:chr16:8068607-8068841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 176

               
               
               Conread position:227-467
               
               
               Cow position:chr16:55944935-55945169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:227-490
               
               
               Cow position:chr16:23483490-23483233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:227-490
               
               
               Cow position:chr16:33595735-33595994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:227-490
               
               
               Cow position:chr16:37669505-37669797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:227-490
               
               
               Cow position:chr16:38243449-38243722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:227-491
               
               
               Cow position:chr16:31880543-31880824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):74, 186

               
               
               Conread position:227-493
               
               
               Cow position:chr16:38663499-38663773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 164

               
               
               Conread position:227-494
               
               
               Cow position:chr16:15960079-15960356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 247

               
               
               Conread position:227-494
               
               
               Cow position:chr16:26372753-26373013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:227-494
               
               
               Cow position:chr16:27701055-27701317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:227-494
               
               
               Cow position:chr16:31117410-31117679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):192, 23

               
               
               Conread position:227-494
               
               
               Cow position:chr16:32781576-32781301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:227-494
               
               
               Cow position:chr16:40333126-40333391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):218, 76

               
               
               Conread position:227-494
               
               
               Cow position:chr16:45678186-45677913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr16:47820783-47820502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 180

               
               
               Conread position:227-494
               
               
               Cow position:chr16:48398050-48398321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:228-406
               
               
               Cow position:chr16:23721827-23722012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:228-414
               
               
               Cow position:chr16:16178235-16178055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:228-417
               
               
               Cow position:chr16:23564346-23564152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:228-442
               
               
               Cow position:chr16:50286720-50286507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:228-494
               
               
               Cow position:chr16:4856890-4857166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 175

               
               
               Conread position:228-494
               
               
               Cow position:chr16:12274278-12274004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:228-494
               
               
               Cow position:chr16:51501138-51500869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:229-319
               
               
               Cow position:chr16:52363915-52363825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-389
               
               
               Cow position:chr16:23881006-23881163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:229-399
               
               
               Cow position:chr16:49733938-49734108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr16:52357329-52357519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:229-438
               
               
               Cow position:chr16:15714319-15714107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 130

               
               
               Conread position:229-443
               
               
               Cow position:chr16:38464093-38464309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 160

               
               
               Conread position:229-492
               
               
               Cow position:chr16:56232019-56231764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):190, 78

               
               
               Conread position:229-494
               
               
               Cow position:chr16:45700273-45700547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 134

               
               
               Conread position:230-316
               
               
               Cow position:chr16:48369581-48369667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-340
               
               
               Cow position:chr16:19720610-19720722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-344
               
               
               Cow position:chr16:11634877-11634761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-345
               
               
               Cow position:chr16:37372948-37372831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-362
               
               
               Cow position:chr16:50085286-50085416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr16:30368619-30368761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:230-374
               
               
               Cow position:chr16:19756573-19756714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:230-378
               
               
               Cow position:chr16:26809579-26809429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-383
               
               
               Cow position:chr16:4911245-4911392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr16:31559110-31558953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 133

               
               
               Conread position:230-398
               
               
               Cow position:chr16:50078551-50078720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr16:23515560-23515728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:230-399
               
               
               Cow position:chr16:42107835-42107667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:230-404
               
               
               Cow position:chr16:43323064-43322881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:230-406
               
               
               Cow position:chr16:17746239-17746068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr16:26069945-26069781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:230-407
               
               
               Cow position:chr16:14841570-14841389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-407
               
               
               Cow position:chr16:30646715-30646542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:230-410
               
               
               Cow position:chr16:9097232-9097050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr16:23395153-23395335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:230-414
               
               
               Cow position:chr16:12492907-12493092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:230-414
               
               
               Cow position:chr16:18429794-18429610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-414
               
               
               Cow position:chr16:55784540-55784729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr16:46752064-46752249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:230-417
               
               
               Cow position:chr16:8242721-8242899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr16:16232265-16232074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr16:17027733-17027544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr16:25369595-25369406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr16:30936069-30935879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr16:42038270-42038082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:230-417
               
               
               Cow position:chr16:55613295-55613484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:230-419
               
               
               Cow position:chr16:52325390-52325581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-422
               
               
               Cow position:chr16:25419045-25419239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-429
               
               
               Cow position:chr16:7546630-7546819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:230-430
               
               
               Cow position:chr16:1582723-1582920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:230-430
               
               
               Cow position:chr16:14343793-14343586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:230-434
               
               
               Cow position:chr16:11653336-11653140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-434
               
               
               Cow position:chr16:28233099-28233303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-438
               
               
               Cow position:chr16:10249610-10249821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:230-440
               
               
               Cow position:chr16:44138285-44138496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:230-441
               
               
               Cow position:chr16:7429588-7429374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:230-442
               
               
               Cow position:chr16:258077-258288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:230-442
               
               
               Cow position:chr16:9560279-9560501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:230-442
               
               
               Cow position:chr16:9578287-9578497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:230-442
               
               
               Cow position:chr16:17135939-17135721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:230-442
               
               
               Cow position:chr16:18243943-18243736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:230-442
               
               
               Cow position:chr16:42432911-42433117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr16:43909630-43909848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:230-455
               
               
               Cow position:chr16:29766526-29766306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:230-468
               
               
               Cow position:chr16:1548676-1548908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:230-490
               
               
               Cow position:chr16:820457-820188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:230-490
               
               
               Cow position:chr16:7665846-7665576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-490
               
               
               Cow position:chr16:36120790-36121040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):189, 73

               
               
               Conread position:230-490
               
               
               Cow position:chr16:44429083-44428819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):186, 38

               
               
               Conread position:230-492
               
               
               Cow position:chr16:5654708-5654448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:230-493
               
               
               Cow position:chr16:29608728-29608455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:230-493
               
               
               Cow position:chr16:32301796-32302068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr16:8018163-8017903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):181, 71

               
               
               Conread position:230-494
               
               
               Cow position:chr16:8448454-8448712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:230-494
               
               
               Cow position:chr16:8530692-8530949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:230-494
               
               
               Cow position:chr16:8738273-8738000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:230-494
               
               
               Cow position:chr16:10020748-10020472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr16:11094617-11094893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr16:17134855-17135126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr16:18353748-18354021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:230-494
               
               
               Cow position:chr16:19047227-19047500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:230-494
               
               
               Cow position:chr16:28880137-28879879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:230-494
               
               
               Cow position:chr16:29557418-29557692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):120, 179

               
               
               Conread position:230-494
               
               
               Cow position:chr16:38244412-38244690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:230-494
               
               
               Cow position:chr16:41530102-41530355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr16:42539377-42539654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr16:42977680-42977398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:230-494
               
               
               Cow position:chr16:44743924-44744198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr16:50289361-50289085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:230-494
               
               
               Cow position:chr16:53508791-53509047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):186, 25

               
               
               Conread position:230-494
               
               
               Cow position:chr16:54664592-54664865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:230-494
               
               
               Cow position:chr16:54734456-54734181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:230-495
               
               
               Cow position:chr16:42733815-42734081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):127, 37

               
               
               Conread position:230-496
               
               
               Cow position:chr16:13712736-13713000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:231-313
               
               
               Cow position:chr16:47509555-47509637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:74
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-369
               
               
               Cow position:chr16:13770972-13770826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-383
               
               
               Cow position:chr16:47163329-47163489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-385
               
               
               Cow position:chr16:51247150-51246986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-404
               
               
               Cow position:chr16:44210355-44210525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:231-404
               
               
               Cow position:chr16:49174501-49174317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr16:19496815-19496988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):135, 24

               
               
               Conread position:231-409
               
               
               Cow position:chr16:28001022-28001202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 165

               
               
               Conread position:231-409
               
               
               Cow position:chr16:47802935-47802764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:231-414
               
               
               Cow position:chr16:20743111-20743291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:231-414
               
               
               Cow position:chr16:22776214-22776399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr16:37154429-37154239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:231-414
               
               
               Cow position:chr16:42398684-42398869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:231-414
               
               
               Cow position:chr16:50569465-50569286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr16:24674468-24674658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:231-427
               
               
               Cow position:chr16:5293818-5293627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:231-430
               
               
               Cow position:chr16:30174316-30174524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-431
               
               
               Cow position:chr16:17474961-17474770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):188, 74

               
               
               Conread position:231-431
               
               
               Cow position:chr16:27117512-27117307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:231-431
               
               
               Cow position:chr16:41806919-41807097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:231-440
               
               
               Cow position:chr16:7496454-7496252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-442
               
               
               Cow position:chr16:11359352-11359145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:231-442
               
               
               Cow position:chr16:48581132-48580912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:231-442
               
               
               Cow position:chr16:50282230-50282439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):169, 35

               
               
               Conread position:231-443
               
               
               Cow position:chr16:24202656-24202872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:231-443
               
               
               Cow position:chr16:28395886-28396088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-444
               
               
               Cow position:chr16:28444282-28444498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:231-450
               
               
               Cow position:chr16:8205877-8206096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:231-472
               
               
               Cow position:chr16:9730000-9730247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:231-475
               
               
               Cow position:chr16:49860439-49860190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:231-485
               
               
               Cow position:chr16:42444365-42444102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):78, 104

               
               
               Conread position:231-490
               
               
               Cow position:chr16:36286482-36286743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):126, 74

               
               
               Conread position:231-491
               
               
               Cow position:chr16:16817036-16816762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):151, 60

               
               
               Conread position:231-493
               
               
               Cow position:chr16:9973277-9973562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr16:14323993-14324258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr16:18206165-18205896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:231-494
               
               
               Cow position:chr16:29528044-29527759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:231-494
               
               
               Cow position:chr16:31561959-31561687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr16:39165438-39165177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):188, 71

               
               
               Conread position:231-494
               
               
               Cow position:chr16:49336425-49336164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 89

               
               
               Conread position:231-494
               
               
               Cow position:chr16:53428459-53428193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):137, 79

               
               
               Conread position:231-496
               
               
               Cow position:chr16:55683503-55683235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:232-372
               
               
               Cow position:chr16:42778149-42778012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-379
               
               
               Cow position:chr16:41095934-41095787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):125, 129

               
               
               Conread position:232-380
               
               
               Cow position:chr16:7727836-7727986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 118

               
               
               Conread position:232-385
               
               
               Cow position:chr16:2751178-2751026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:232-389
               
               
               Cow position:chr16:8795504-8795671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr16:12111764-12111928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-404
               
               
               Cow position:chr16:48130192-48130362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-426
               
               
               Cow position:chr16:29096121-29095931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):187, 75

               
               
               Conread position:232-427
               
               
               Cow position:chr16:4615264-4615068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:232-427
               
               
               Cow position:chr16:48613274-48613468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-435
               
               
               Cow position:chr16:35297607-35297409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:232-442
               
               
               Cow position:chr16:12220890-12220675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):84, 193

               
               
               Conread position:232-443
               
               
               Cow position:chr16:7723903-7723694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):187, 52

               
               
               Conread position:232-445
               
               
               Cow position:chr16:49229570-49229777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):187, 38

               
               
               Conread position:232-459
               
               
               Cow position:chr16:56627135-56626914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-465
               
               
               Cow position:chr16:8193660-8193421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:232-480
               
               
               Cow position:chr16:46552996-46552752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):175, 15

               
               
               Conread position:232-480
               
               
               Cow position:chr16:56243680-56243936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:232-488
               
               
               Cow position:chr16:15945048-15945305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 216

               
               
               Conread position:232-492
               
               
               Cow position:chr16:11584203-11584460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 67

               
               
               Conread position:232-493
               
               
               Cow position:chr16:424605-424877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):80, 125

               
               
               Conread position:232-494
               
               
               Cow position:chr16:8322792-8323047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):184, 23

               
               
               Conread position:232-494
               
               
               Cow position:chr16:10592648-10592370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:232-494
               
               
               Cow position:chr16:17143142-17142874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr16:18757631-18757904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:232-494
               
               
               Cow position:chr16:19052837-19052574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:232-494
               
               
               Cow position:chr16:20824681-20824419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr16:30036439-30036170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:232-494
               
               
               Cow position:chr16:31149579-31149325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr16:32969878-32970143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):203, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr16:33135131-33134877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):196, 54

               
               
               Conread position:232-494
               
               
               Cow position:chr16:39473954-39474210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):184, 30

               
               
               Conread position:232-494
               
               
               Cow position:chr16:52834697-52834954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):184, 83

               
               
               Conread position:232-496
               
               
               Cow position:chr16:3304240-3303959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:233-338
               
               
               Cow position:chr16:24636007-24636113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):83, 98

               
               
               Conread position:233-340
               
               
               Cow position:chr16:38852598-38852703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-377
               
               
               Cow position:chr16:51216842-51216986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-390
               
               
               Cow position:chr16:13053751-13053596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 99

               
               
               Conread position:233-392
               
               
               Cow position:chr16:35476938-35477091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr16:19053688-19053852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr16:43866641-43866822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:233-411
               
               
               Cow position:chr16:45193605-45193783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:233-413
               
               
               Cow position:chr16:12976673-12976492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:233-417
               
               
               Cow position:chr16:56670707-56670899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:233-424
               
               
               Cow position:chr16:38355229-38355415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:233-431
               
               
               Cow position:chr16:8493786-8493983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 80

               
               
               Conread position:233-435
               
               
               Cow position:chr16:19478565-19478764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):98, 30

               
               
               Conread position:233-442
               
               
               Cow position:chr16:8673407-8673615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:233-442
               
               
               Cow position:chr16:11957378-11957584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):183, 9

               
               
               Conread position:233-442
               
               
               Cow position:chr16:22773176-22772973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):186, 82

               
               
               Conread position:233-442
               
               
               Cow position:chr16:27728452-27728254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):186, 28

               
               
               Conread position:233-442
               
               
               Cow position:chr16:29026416-29026202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:233-453
               
               
               Cow position:chr16:53451908-53451687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:233-456
               
               
               Cow position:chr16:24142749-24142977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:233-479
               
               
               Cow position:chr16:47852395-47852641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):183, 81

               
               
               Conread position:233-492
               
               
               Cow position:chr16:32426522-32426783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:233-493
               
               
               Cow position:chr16:26649432-26649693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):186, 28

               
               
               Conread position:233-494
               
               
               Cow position:chr16:4851912-4852181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:233-494
               
               
               Cow position:chr16:11083199-11082938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:233-494
               
               
               Cow position:chr16:14242571-14242306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:233-494
               
               
               Cow position:chr16:25839814-25839554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):186, 65

               
               
               Conread position:233-494
               
               
               Cow position:chr16:28192254-28192005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr16:38905021-38905293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 133

               
               
               Conread position:233-494
               
               
               Cow position:chr16:45122245-45121974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):76, 244

               
               
               Conread position:233-494
               
               
               Cow position:chr16:48957002-48956734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:233-496
               
               
               Cow position:chr16:54225314-54225581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 223

               
               
               Conread position:233-496
               
               
               Cow position:chr16:54298671-54298406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:234-361
               
               
               Cow position:chr16:39646812-39646689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-370
               
               
               Cow position:chr16:4062585-4062714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr16:24138549-24138707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 127

               
               
               Conread position:234-392
               
               
               Cow position:chr16:42992421-42992261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr16:11775795-11775954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:234-406
               
               
               Cow position:chr16:19282209-19282036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:234-411
               
               
               Cow position:chr16:23822827-23823001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:234-416
               
               
               Cow position:chr16:8090327-8090511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:234-416
               
               
               Cow position:chr16:53813447-53813632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:234-417
               
               
               Cow position:chr16:11364855-11365040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr16:15415524-15415716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:234-430
               
               
               Cow position:chr16:42253204-42253393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:234-442
               
               
               Cow position:chr16:9596571-9596364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:234-442
               
               
               Cow position:chr16:9729400-9729189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr16:17283644-17283440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:234-442
               
               
               Cow position:chr16:21451052-21450841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr16:31575348-31575138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:234-442
               
               
               Cow position:chr16:41752379-41752580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:234-443
               
               
               Cow position:chr16:50442754-50442541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-467
               
               
               Cow position:chr16:48567730-48567502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:234-492
               
               
               Cow position:chr16:8065683-8065949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-493
               
               
               Cow position:chr16:50931331-50931580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:234-494
               
               
               Cow position:chr16:3246001-3246271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:234-494
               
               
               Cow position:chr16:7151971-7152236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr16:7583600-7583333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 112

               
               
               Conread position:234-494
               
               
               Cow position:chr16:10032841-10032575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:234-494
               
               
               Cow position:chr16:13689865-13689600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 81

               
               
               Conread position:234-494
               
               
               Cow position:chr16:24855736-24855477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:234-494
               
               
               Cow position:chr16:35195409-35195675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:234-494
               
               
               Cow position:chr16:42092176-42092450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr16:56510010-56510273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 201

               
               
               Conread position:234-496
               
               
               Cow position:chr16:44654081-44654341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:235-321
               
               
               Cow position:chr16:15814168-15814082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-348
               
               
               Cow position:chr16:27004074-27003958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-349
               
               
               Cow position:chr16:46553767-46553883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr16:48875702-48875844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:235-390
               
               
               Cow position:chr16:21002171-21002328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr16:16543053-16542894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-392
               
               
               Cow position:chr16:47274523-47274682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:235-397
               
               
               Cow position:chr16:10033066-10032902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:235-397
               
               
               Cow position:chr16:30561565-30561411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:235-397
               
               
               Cow position:chr16:31701798-31701644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:235-407
               
               
               Cow position:chr16:23089042-23088875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 88

               
               
               Conread position:235-411
               
               
               Cow position:chr16:50409449-50409273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-414
               
               
               Cow position:chr16:3032513-3032694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:235-414
               
               
               Cow position:chr16:6026798-6026975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:235-414
               
               
               Cow position:chr16:39029892-39030076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:235-414
               
               
               Cow position:chr16:47243163-47242984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):98, 110

               
               
               Conread position:235-414
               
               
               Cow position:chr16:51531209-51531389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:235-416
               
               
               Cow position:chr16:24672659-24672842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:235-417
               
               
               Cow position:chr16:4971820-4972007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:235-417
               
               
               Cow position:chr16:21044500-21044316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:235-417
               
               
               Cow position:chr16:28980033-28979852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):110, 85

               
               
               Conread position:235-424
               
               
               Cow position:chr16:6609308-6609492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):122, 55

               
               
               Conread position:235-426
               
               
               Cow position:chr16:44394488-44394290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:235-435
               
               
               Cow position:chr16:21442408-21442608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:235-439
               
               
               Cow position:chr16:7928181-7928388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr16:9830649-9830439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:235-442
               
               
               Cow position:chr16:12379141-12379358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:235-442
               
               
               Cow position:chr16:15407355-15407563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:235-442
               
               
               Cow position:chr16:35074766-35074556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:235-442
               
               
               Cow position:chr16:51697276-51697077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):184, 68

               
               
               Conread position:235-443
               
               
               Cow position:chr16:23811330-23811117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:235-446
               
               
               Cow position:chr16:7011273-7011058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-452
               
               
               Cow position:chr16:27051249-27051029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-464
               
               
               Cow position:chr16:39516395-39516624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:235-469
               
               
               Cow position:chr16:34256834-34257068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-480
               
               
               Cow position:chr16:23058232-23058485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:235-480
               
               
               Cow position:chr16:56874031-56874277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:235-490
               
               
               Cow position:chr16:23955630-23955891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:235-491
               
               
               Cow position:chr16:7418574-7418324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:235-492
               
               
               Cow position:chr16:39682898-39683164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 96

               
               
               Conread position:235-493
               
               
               Cow position:chr16:9985201-9985463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:235-494
               
               
               Cow position:chr16:7076121-7075849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 172

               
               
               Conread position:235-494
               
               
               Cow position:chr16:13306670-13306932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr16:17746045-17745769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:235-494
               
               
               Cow position:chr16:22984951-22984693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr16:29712617-29712357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):184, 78

               
               
               Conread position:235-494
               
               
               Cow position:chr16:33236082-33236341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:235-494
               
               
               Cow position:chr16:46433123-46433394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:235-494
               
               
               Cow position:chr16:56796453-56796730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:236-406
               
               
               Cow position:chr16:41696206-41696039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:236-431
               
               
               Cow position:chr16:16025644-16025441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:236-437
               
               
               Cow position:chr16:8469880-8469674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:236-442
               
               
               Cow position:chr16:15905044-15905256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:237-494
               
               
               Cow position:chr16:21317410-21317662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):174, 41

               
               
               Conread position:238-360
               
               
               Cow position:chr16:17285061-17284943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:238-407
               
               
               Cow position:chr16:30897803-30897969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:238-414
               
               
               Cow position:chr16:51143997-51143822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):89, 80

               
               
               Conread position:238-417
               
               
               Cow position:chr16:56580104-56579929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:238-424
               
               
               Cow position:chr16:47662924-47662744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:238-467
               
               
               Cow position:chr16:17460375-17460138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 216

               
               
               Conread position:239-442
               
               
               Cow position:chr16:22850526-22850323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 188

               
               
               Conread position:239-494
               
               
               Cow position:chr16:4910324-4910591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:240-373
               
               
               Cow position:chr16:24055081-24054956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-389
               
               
               Cow position:chr16:26842946-26842793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-394
               
               
               Cow position:chr16:51393191-51393348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:240-396
               
               
               Cow position:chr16:3938816-3938970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:240-396
               
               
               Cow position:chr16:10011652-10011812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 125

               
               
               Conread position:240-396
               
               
               Cow position:chr16:46184357-46184198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr16:25610222-25610051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:240-406
               
               
               Cow position:chr16:13906258-13906415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr16:18953777-18953614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:240-409
               
               
               Cow position:chr16:15251864-15252024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr16:17665851-17665679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:240-413
               
               
               Cow position:chr16:3047146-3047315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:240-413
               
               
               Cow position:chr16:4275546-4275715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:240-414
               
               
               Cow position:chr16:38581201-38581025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:240-414
               
               
               Cow position:chr16:38743224-38743047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:240-417
               
               
               Cow position:chr16:6016188-6016360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr16:8288755-8288927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr16:9279908-9280097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr16:9986860-9987048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:240-417
               
               
               Cow position:chr16:17180355-17180179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:240-417
               
               
               Cow position:chr16:40029689-40029864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:240-424
               
               
               Cow position:chr16:13483380-13483563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:240-424
               
               
               Cow position:chr16:30211645-30211466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-424
               
               
               Cow position:chr16:43758450-43758634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:240-427
               
               
               Cow position:chr16:9959025-9958840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:240-428
               
               
               Cow position:chr16:3048956-3049144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 122

               
               
               Conread position:240-428
               
               
               Cow position:chr16:4277356-4277544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 122

               
               
               Conread position:240-434
               
               
               Cow position:chr16:19402569-19402760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:240-439
               
               
               Cow position:chr16:238462-238265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):175, 59

               
               
               Conread position:240-440
               
               
               Cow position:chr16:7136150-7136349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:240-440
               
               
               Cow position:chr16:30908753-30908951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):169, 83

               
               
               Conread position:240-442
               
               
               Cow position:chr16:12324650-12324449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 77

               
               
               Conread position:240-442
               
               
               Cow position:chr16:45047044-45046831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 166

               
               
               Conread position:240-442
               
               
               Cow position:chr16:51578253-51578443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):179, 59

               
               
               Conread position:240-442
               
               
               Cow position:chr16:52636199-52636390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-443
               
               
               Cow position:chr16:47180969-47181173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 147

               
               
               Conread position:240-444
               
               
               Cow position:chr16:6262653-6262862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:240-444
               
               
               Cow position:chr16:11390078-11390294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:240-444
               
               
               Cow position:chr16:32142288-32142082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:240-451
               
               
               Cow position:chr16:15726156-15726371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:240-453
               
               
               Cow position:chr16:45045014-45044794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:240-465
               
               
               Cow position:chr16:47519028-47518812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):115, 56

               
               
               Conread position:240-477
               
               
               Cow position:chr16:20921348-20921107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:240-478
               
               
               Cow position:chr16:34998426-34998667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:240-485
               
               
               Cow position:chr16:889180-889414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-489
               
               
               Cow position:chr16:21369994-21370240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:240-490
               
               
               Cow position:chr16:19644082-19643824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):166, 59

               
               
               Conread position:240-492
               
               
               Cow position:chr16:14106840-14106583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):72, 137

               
               
               Conread position:240-493
               
               
               Cow position:chr16:30305621-30305878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:240-493
               
               
               Cow position:chr16:45348586-45348323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 131

               
               
               Conread position:240-494
               
               
               Cow position:chr16:7505273-7505023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):178, 7

               
               
               Conread position:240-494
               
               
               Cow position:chr16:9553245-9552996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):203, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr16:9600612-9600366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr16:9905292-9905026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):61, 223

               
               
               Conread position:240-494
               
               
               Cow position:chr16:13990162-13989917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr16:19670162-19670414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:240-494
               
               
               Cow position:chr16:23718778-23719044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:240-494
               
               
               Cow position:chr16:29159309-29159067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:240-494
               
               
               Cow position:chr16:31078907-31079155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr16:33704998-33704742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):208, 63

               
               
               Conread position:240-494
               
               
               Cow position:chr16:45139859-45139607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:240-494
               
               
               Cow position:chr16:45813502-45813757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):176, 160

               
               
               Conread position:240-494
               
               
               Cow position:chr16:48095573-48095828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr16:54226418-54226663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:240-494
               
               
               Cow position:chr16:56082166-56082427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-495
               
               
               Cow position:chr16:7441904-7442165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:240-496
               
               
               Cow position:chr16:12077285-12077544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:240-496
               
               
               Cow position:chr16:16597755-16597494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:240-496
               
               
               Cow position:chr16:33198237-33198505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:241-399
               
               
               Cow position:chr16:16163518-16163668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:241-411
               
               
               Cow position:chr16:11916012-11916188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:241-429
               
               
               Cow position:chr16:22327705-22327520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:241-442
               
               
               Cow position:chr16:7626348-7626153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:241-490
               
               
               Cow position:chr16:48145210-48145463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:241-494
               
               
               Cow position:chr16:44584248-44584501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:241-494
               
               
               Cow position:chr16:47835114-47834865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):160, 65

               
               
               Conread position:241-494
               
               
               Cow position:chr16:50906673-50906408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 105

               
               
               Conread position:242-399
               
               
               Cow position:chr16:56285500-56285649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:242-442
               
               
               Cow position:chr16:32893813-32893622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):174, 57

               
               
               Conread position:242-472
               
               
               Cow position:chr16:29038111-29037877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:242-494
               
               
               Cow position:chr16:11134791-11135047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:242-494
               
               
               Cow position:chr16:46655476-46655221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:242-496
               
               
               Cow position:chr16:54579359-54579099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:243-417
               
               
               Cow position:chr16:15949315-15949488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:244-345
               
               
               Cow position:chr16:21761756-21761857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-390
               
               
               Cow position:chr16:51043838-51043699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:244-494
               
               
               Cow position:chr16:14754136-14754387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):153, 73

               
               
               Conread position:244-494
               
               
               Cow position:chr16:23034021-23033783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):58, 137

               
               
               Conread position:244-494
               
               
               Cow position:chr16:38708644-38708895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):89, 70

               
               
               Conread position:245-389
               
               
               Cow position:chr16:8083736-8083882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:245-397
               
               
               Cow position:chr16:17617169-17617323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:245-397
               
               
               Cow position:chr16:27759409-27759565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-417
               
               
               Cow position:chr16:7812884-7812710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:245-417
               
               
               Cow position:chr16:12939808-12939641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:245-425
               
               
               Cow position:chr16:33290578-33290395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:245-427
               
               
               Cow position:chr16:22323619-22323801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 45

               
               
               Conread position:247-382
               
               
               Cow position:chr16:41653161-41653028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-396
               
               
               Cow position:chr16:18669150-18669001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-407
               
               
               Cow position:chr16:34506534-34506381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr16:33632489-33632655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:247-442
               
               
               Cow position:chr16:12010287-12010089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-454
               
               
               Cow position:chr16:28199217-28199011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-392
               
               
               Cow position:chr16:38543964-38543814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:248-399
               
               
               Cow position:chr16:47774137-47773998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-424
               
               
               Cow position:chr16:4507879-4507708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:248-425
               
               
               Cow position:chr16:15023446-15023617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:248-444
               
               
               Cow position:chr16:31241104-31241298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):65, 77

               
               
               Conread position:248-446
               
               
               Cow position:chr16:42201093-42200888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:248-454
               
               
               Cow position:chr16:34204877-34205082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):168, 67

               
               
               Conread position:248-467
               
               
               Cow position:chr16:26676501-26676719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:248-492
               
               
               Cow position:chr16:48146466-48146722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 228

               
               
               Conread position:248-493
               
               
               Cow position:chr16:8841085-8840831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:248-494
               
               
               Cow position:chr16:7702703-7702465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:248-494
               
               
               Cow position:chr16:13698706-13698448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:248-494
               
               
               Cow position:chr16:14125309-14125079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):171, 61

               
               
               Conread position:248-494
               
               
               Cow position:chr16:21381384-21381626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):171, 65

               
               
               Conread position:248-494
               
               
               Cow position:chr16:23729730-23729991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:248-494
               
               
               Cow position:chr16:33646203-33645948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 71

               
               
               Conread position:248-494
               
               
               Cow position:chr16:45676686-45676917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):146, 19

               
               
               Conread position:249-351
               
               
               Cow position:chr16:12236119-12236219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:249-485
               
               
               Cow position:chr16:51795417-51795655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:249-490
               
               
               Cow position:chr16:14568304-14568545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 74

               
               
               Conread position:249-494
               
               
               Cow position:chr16:10505001-10504767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):170, 14

               
               
               Conread position:249-494
               
               
               Cow position:chr16:34753766-34754025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:250-396
               
               
               Cow position:chr16:9079517-9079379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr16:33629606-33629464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-406
               
               
               Cow position:chr16:14226592-14226739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:250-407
               
               
               Cow position:chr16:29060570-29060407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:250-414
               
               
               Cow position:chr16:6802496-6802667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-425
               
               
               Cow position:chr16:11654230-11654055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:250-442
               
               
               Cow position:chr16:51610639-51610840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:250-445
               
               
               Cow position:chr16:20205650-20205452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:250-494
               
               
               Cow position:chr16:24703036-24702788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:250-494
               
               
               Cow position:chr16:25387155-25386910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:252-468
               
               
               Cow position:chr16:48917659-48917437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:252-494
               
               
               Cow position:chr16:7550155-7549902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:252-494
               
               
               Cow position:chr16:16571084-16570850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):167, 66

               
               
               Conread position:252-496
               
               
               Cow position:chr16:25170577-25170327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:253-389
               
               
               Cow position:chr16:33458762-33458628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:253-490
               
               
               Cow position:chr16:4192248-4192485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:254-417
               
               
               Cow position:chr16:45826539-45826698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):127, 51

               
               
               Conread position:254-493
               
               
               Cow position:chr16:3614919-3614682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:255-404
               
               
               Cow position:chr16:23187734-23187577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:255-406
               
               
               Cow position:chr16:13252138-13252279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:255-431
               
               
               Cow position:chr16:39385670-39385496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):164, 62

               
               
               Conread position:255-494
               
               
               Cow position:chr16:2417405-2417654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:255-494
               
               
               Cow position:chr16:42241942-42242180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):161, 51

               
               
               Conread position:259-494
               
               
               Cow position:chr16:13578678-13578926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:261-490
               
               
               Cow position:chr16:33267896-33267656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:261-494
               
               
               Cow position:chr16:47964646-47964880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:263-494
               
               
               Cow position:chr16:53792633-53792883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:264-492
               
               
               Cow position:chr16:8366652-8366895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:264-494
               
               
               Cow position:chr16:33405317-33405560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:265-494
               
               
               Cow position:chr16:7619003-7619242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:265-494
               
               
               Cow position:chr16:41578397-41578161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 59

               
               
               Conread position:266-417
               
               
               Cow position:chr16:5243260-5243106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:266-442
               
               
               Cow position:chr16:25484492-25484333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:266-494
               
               
               Cow position:chr16:51112711-51112941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:268-493
               
               
               Cow position:chr16:4059534-4059291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:269-442
               
               
               Cow position:chr16:43185466-43185291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:269-489
               
               
               Cow position:chr16:11615076-11615305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:270-492
               
               
               Cow position:chr16:33226372-33226601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):149, 120

               
               
               Conread position:270-494
               
               
               Cow position:chr16:48006328-48006557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:273-399
               
               
               Cow position:chr16:6266181-6266306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:274-390
               
               
               Cow position:chr16:31626121-31626237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-397
               
               
               Cow position:chr16:45233522-45233403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr16:53406547-53406405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:275-494
               
               
               Cow position:chr16:8768945-8768738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):168, 36

               
               
               Conread position:280-441
               
               
               Cow position:chr16:22380199-22380360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:280-442
               
               
               Cow position:chr16:48086717-48086874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:280-490
               
               
               Cow position:chr16:21040182-21039964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:281-493
               
               
               Cow position:chr16:37452462-37452679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):138, 39

               
               
               Conread position:281-494
               
               
               Cow position:chr16:45610143-45609926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:283-442
               
               
               Cow position:chr16:34412958-34412803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:291-494
               
               
               Cow position:chr16:33054335-33054548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:292-487
               
               
               Cow position:chr16:11806813-11806611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:293-494
               
               
               Cow position:chr16:5636728-5636521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):126, 107

               
               
               Conread position:297-442
               
               
               Cow position:chr16:45785877-45785731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:299-494
               
               
               Cow position:chr16:8811961-8812147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:302-411
               
               
               Cow position:chr16:12097776-12097667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-417
               
               
               Cow position:chr16:53086203-53086321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:302-431
               
               
               Cow position:chr16:20265428-20265558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-446
               
               
               Cow position:chr16:17291890-17292033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-493
               
               
               Cow position:chr16:17903512-17903713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:302-494
               
               
               Cow position:chr16:3114674-3114473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr16:19408393-19408581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):113, 143

               
               
               Conread position:302-494
               
               
               Cow position:chr16:20025575-20025382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:303-469
               
               
               Cow position:chr16:24403296-24403459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:303-492
               
               
               Cow position:chr16:7980924-7980729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:303-493
               
               
               Cow position:chr16:52133382-52133576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:304-494
               
               
               Cow position:chr16:5364034-5363831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:304-494
               
               
               Cow position:chr16:48340562-48340761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):115, 11

               
               
               Conread position:305-472
               
               
               Cow position:chr16:8438520-8438690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 108

               
               
               Conread position:305-492
               
               
               Cow position:chr16:40700605-40700791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:305-494
               
               
               Cow position:chr16:8933296-8933488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):138, 96

               
               
               Conread position:305-494
               
               
               Cow position:chr16:32807161-32807357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):115, 72

               
               
               Conread position:307-414
               
               
               Cow position:chr16:21593961-21594068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:308-488
               
               
               Cow position:chr16:40562360-40562172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:308-494
               
               
               Cow position:chr16:5257123-5256929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:308-494
               
               
               Cow position:chr16:19003403-19003588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:310-493
               
               
               Cow position:chr16:34220315-34220120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:312-494
               
               
               Cow position:chr16:30358938-30359125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:314-494
               
               
               Cow position:chr16:48494431-48494620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):105, 155

               
               
               Conread position:315-494
               
               
               Cow position:chr16:20069954-20069767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:317-494
               
               
               Cow position:chr16:18402806-18402620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:319-494
               
               
               Cow position:chr16:22919585-22919402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr16:42340314-42340131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:320-493
               
               
               Cow position:chr16:4626275-4626456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:324-493
               
               
               Cow position:chr16:17289060-17288883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr16:21761857-21762036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-496
               
               
               Cow position:chr16:42345501-42345674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:325-494
               
               
               Cow position:chr16:42241159-42240985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 90

               
               
               Conread position:328-494
               
               
               Cow position:chr16:41696983-41697150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:329-485
               
               
               Cow position:chr16:39401908-39402064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:332-494
               
               
               Cow position:chr16:12060521-12060352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 147

               
               
               Conread position:332-494
               
               
               Cow position:chr16:36203514-36203689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:333-494
               
               
               Cow position:chr16:50370698-50370531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:215-399
               
               
               Cow position:chr17:18458736-18458557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:215-443
               
               
               Cow position:chr17:43315029-43315253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:216-422
               
               
               Cow position:chr17:42780059-42780270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 142

               
               
               Conread position:216-494
               
               
               Cow position:chr17:40383946-40384228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 168

               
               
               Conread position:217-397
               
               
               Cow position:chr17:26554772-26554603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:217-472
               
               
               Cow position:chr17:15664935-15664678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):105, 97

               
               
               Conread position:217-494
               
               
               Cow position:chr17:11962272-11962555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:218-442
               
               
               Cow position:chr17:14024371-14024597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:219-399
               
               
               Cow position:chr17:30359714-30359536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:219-492
               
               
               Cow position:chr17:30713604-30713328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:219-494
               
               
               Cow position:chr17:21003574-21003852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):109, 98

               
               
               Conread position:220-494
               
               
               Cow position:chr17:29714957-29715222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):5, 48

               
               
               Conread position:221-404
               
               
               Cow position:chr17:15103485-15103667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:221-492
               
               
               Cow position:chr17:45079812-45079547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:221-494
               
               
               Cow position:chr17:15684758-15684489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):190, 49

               
               
               Conread position:222-377
               
               
               Cow position:chr17:29282412-29282270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:222-414
               
               
               Cow position:chr17:36573864-36574060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:222-421
               
               
               Cow position:chr17:27886594-27886791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 86

               
               
               Conread position:222-442
               
               
               Cow position:chr17:27292200-27292423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:222-490
               
               
               Cow position:chr17:25612341-25612069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 93

               
               
               Conread position:222-493
               
               
               Cow position:chr17:40394272-40393988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:222-494
               
               
               Cow position:chr17:40772084-40771813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):221, 97

               
               
               Conread position:223-376
               
               
               Cow position:chr17:41289791-41289942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:223-391
               
               
               Cow position:chr17:24116867-24116696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 163

               
               
               Conread position:223-397
               
               
               Cow position:chr17:31480777-31480958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:223-430
               
               
               Cow position:chr17:30270283-30270491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 202

               
               
               Conread position:223-442
               
               
               Cow position:chr17:17035199-17034983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):196, 69

               
               
               Conread position:223-492
               
               
               Cow position:chr17:7143111-7142842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 84

               
               
               Conread position:223-494
               
               
               Cow position:chr17:4601309-4601570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:223-494
               
               
               Cow position:chr17:13922735-13922455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):143, 85

               
               
               Conread position:223-494
               
               
               Cow position:chr17:21489378-21489647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:223-494
               
               
               Cow position:chr17:24751165-24750893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:223-494
               
               
               Cow position:chr17:25118140-25117867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):90, 124

               
               
               Conread position:223-494
               
               
               Cow position:chr17:40639200-40638926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:224-464
               
               
               Cow position:chr17:25467249-25466991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:225-380
               
               
               Cow position:chr17:25345726-25345565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:225-409
               
               
               Cow position:chr17:12201046-12200861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:225-426
               
               
               Cow position:chr17:21466008-21466213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:225-490
               
               
               Cow position:chr17:3577780-3577516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:226-392
               
               
               Cow position:chr17:20847319-20847151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:226-428
               
               
               Cow position:chr17:13297633-13297430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:226-484
               
               
               Cow position:chr17:28468374-28468113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):85, 170

               
               
               Conread position:226-490
               
               
               Cow position:chr17:17682664-17682921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):193, 94

               
               
               Conread position:226-493
               
               
               Cow position:chr17:908989-908720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 88

               
               
               Conread position:226-494
               
               
               Cow position:chr17:2275714-2275451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:226-494
               
               
               Cow position:chr17:21806198-21806475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:226-494
               
               
               Cow position:chr17:40412830-40412562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:227-340
               
               
               Cow position:chr17:44797928-44797813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-359
               
               
               Cow position:chr17:41144136-41144264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:227-366
               
               
               Cow position:chr17:20887273-20887130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:227-376
               
               
               Cow position:chr17:22223962-22223816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr17:8809259-8809410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr17:18673788-18673945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr17:20110563-20110403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:227-394
               
               
               Cow position:chr17:27606762-27606600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-396
               
               
               Cow position:chr17:39759357-39759199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-397
               
               
               Cow position:chr17:5048179-5048010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:227-399
               
               
               Cow position:chr17:6317856-6318025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 77

               
               
               Conread position:227-399
               
               
               Cow position:chr17:17782300-17782133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-405
               
               
               Cow position:chr17:24898454-24898272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr17:3387968-3387787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:227-407
               
               
               Cow position:chr17:6787189-6787006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-413
               
               
               Cow position:chr17:5693405-5693591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:227-413
               
               
               Cow position:chr17:11080596-11080789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr17:6761605-6761788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr17:10528480-10528668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:227-417
               
               
               Cow position:chr17:20913356-20913170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:227-417
               
               
               Cow position:chr17:25121999-25122184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr17:35193568-35193760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-420
               
               
               Cow position:chr17:25474883-25474689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:227-426
               
               
               Cow position:chr17:12215004-12215208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:227-431
               
               
               Cow position:chr17:15728716-15728518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr17:9940943-9940725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:227-442
               
               
               Cow position:chr17:11831869-11832081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):192, 92

               
               
               Conread position:227-442
               
               
               Cow position:chr17:12946106-12946315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:227-442
               
               
               Cow position:chr17:20904858-20905065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):192, 75

               
               
               Conread position:227-442
               
               
               Cow position:chr17:26072510-26072727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:227-442
               
               
               Cow position:chr17:29292141-29292346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr17:40673622-40673404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-488
               
               
               Cow position:chr17:1025585-1025838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):157, 74

               
               
               Conread position:227-490
               
               
               Cow position:chr17:14033391-14033660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 231

               
               
               Conread position:227-490
               
               
               Cow position:chr17:23246435-23246185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):194, 34

               
               
               Conread position:227-490
               
               
               Cow position:chr17:24883321-24883587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 240

               
               
               Conread position:227-490
               
               
               Cow position:chr17:25616494-25616237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:227-490
               
               
               Cow position:chr17:27058300-27058575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-491
               
               
               Cow position:chr17:3153321-3153592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:227-492
               
               
               Cow position:chr17:20090380-20090654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:227-492
               
               
               Cow position:chr17:20157857-20157583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 164

               
               
               Conread position:227-492
               
               
               Cow position:chr17:40852218-40851953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:227-494
               
               
               Cow position:chr17:4105743-4106018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr17:4121478-4121754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr17:5372283-5372553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr17:9854231-9853963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 194

               
               
               Conread position:227-494
               
               
               Cow position:chr17:12447153-12447426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:227-494
               
               
               Cow position:chr17:12536226-12536492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:227-494
               
               
               Cow position:chr17:18934505-18934233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr17:21325592-21325309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr17:21599432-21599704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:227-494
               
               
               Cow position:chr17:21972879-21973157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr17:24974193-24973928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:227-494
               
               
               Cow position:chr17:25126593-25126328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:227-494
               
               
               Cow position:chr17:25800635-25800906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:227-494
               
               
               Cow position:chr17:29995186-29995462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 247

               
               
               Conread position:227-494
               
               
               Cow position:chr17:32138169-32138447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr17:32989722-32989452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 38

               
               
               Conread position:227-494
               
               
               Cow position:chr17:32993378-32993648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 38

               
               
               Conread position:227-494
               
               
               Cow position:chr17:36275585-36275314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:228-491
               
               
               Cow position:chr17:20848772-20848501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):88, 186

               
               
               Conread position:228-494
               
               
               Cow position:chr17:11215645-11215915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:228-494
               
               
               Cow position:chr17:24928726-24928453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:229-319
               
               
               Cow position:chr17:1409944-1410034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:79
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-378
               
               
               Cow position:chr17:7659350-7659505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:229-391
               
               
               Cow position:chr17:21677915-21678072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:229-399
               
               
               Cow position:chr17:12289163-12289331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:229-417
               
               
               Cow position:chr17:7711683-7711497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:229-427
               
               
               Cow position:chr17:21363630-21363432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:229-442
               
               
               Cow position:chr17:40276988-40276774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:229-442
               
               
               Cow position:chr17:40355508-40355292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:229-492
               
               
               Cow position:chr17:35573994-35573735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:229-492
               
               
               Cow position:chr17:39606669-39606406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):186, 39

               
               
               Conread position:229-493
               
               
               Cow position:chr17:5768141-5767886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):190, 39

               
               
               Conread position:229-494
               
               
               Cow position:chr17:8948720-8948990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:229-494
               
               
               Cow position:chr17:38615210-38614935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 208

               
               
               Conread position:230-312
               
               
               Cow position:chr17:38483911-38483829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:73
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-338
               
               
               Cow position:chr17:35173108-35172999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:230-351
               
               
               Cow position:chr17:21478471-21478589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:230-351
               
               
               Cow position:chr17:39904722-39904599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr17:4271113-4271241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:230-372
               
               
               Cow position:chr17:24334694-24334552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr17:24612891-24612739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-390
               
               
               Cow position:chr17:31736256-31736419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-391
               
               
               Cow position:chr17:7865071-7864910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr17:34806420-34806582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:230-397
               
               
               Cow position:chr17:6767011-6767181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:230-397
               
               
               Cow position:chr17:27258673-27258502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:230-399
               
               
               Cow position:chr17:15333438-15333601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr17:27565809-27565637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-405
               
               
               Cow position:chr17:30977262-30977092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr17:6936432-6936609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:230-407
               
               
               Cow position:chr17:25585420-25585251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr17:10414739-10414564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr17:21181700-21181517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 117

               
               
               Conread position:230-411
               
               
               Cow position:chr17:32027201-32027386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-413
               
               
               Cow position:chr17:20836336-20836155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr17:11920916-11921102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr17:20359364-20359175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr17:31563438-31563626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:230-417
               
               
               Cow position:chr17:1081454-1081264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 134

               
               
               Conread position:230-417
               
               
               Cow position:chr17:3320383-3320208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr17:16438473-16438661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:230-417
               
               
               Cow position:chr17:18720206-18720387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr17:21076019-21075833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:230-417
               
               
               Cow position:chr17:21863905-21863716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr17:36522798-36522987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr17:37857443-37857633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:230-417
               
               
               Cow position:chr17:43323296-43323485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:230-423
               
               
               Cow position:chr17:3364835-3364645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):140, 84

               
               
               Conread position:230-429
               
               
               Cow position:chr17:25875641-25875442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):111, 93

               
               
               Conread position:230-430
               
               
               Cow position:chr17:21236771-21236570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 195

               
               
               Conread position:230-431
               
               
               Cow position:chr17:44234491-44234295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):189, 79

               
               
               Conread position:230-440
               
               
               Cow position:chr17:26802681-26802898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 189

               
               
               Conread position:230-442
               
               
               Cow position:chr17:1463082-1463297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr17:5421927-5421712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr17:9056453-9056664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):189, 75

               
               
               Conread position:230-442
               
               
               Cow position:chr17:13414119-13414334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr17:20884771-20884557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr17:21738619-21738840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr17:25886078-25885863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr17:36864870-36864664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:230-469
               
               
               Cow position:chr17:26000365-26000130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 179

               
               
               Conread position:230-482
               
               
               Cow position:chr17:37340785-37341053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:230-483
               
               
               Cow position:chr17:26448789-26448532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:230-484
               
               
               Cow position:chr17:5288410-5288155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 73

               
               
               Conread position:230-485
               
               
               Cow position:chr17:14049964-14050218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:230-490
               
               
               Cow position:chr17:9770751-9770491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:230-490
               
               
               Cow position:chr17:25473035-25473300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-491
               
               
               Cow position:chr17:1256252-1256524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:230-492
               
               
               Cow position:chr17:17059664-17059402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):203, 72

               
               
               Conread position:230-492
               
               
               Cow position:chr17:17180291-17180020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:230-492
               
               
               Cow position:chr17:25128108-25128370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:230-492
               
               
               Cow position:chr17:31037131-31037402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 29

               
               
               Conread position:230-492
               
               
               Cow position:chr17:33164574-33164839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 93

               
               
               Conread position:230-493
               
               
               Cow position:chr17:1035348-1035620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:230-493
               
               
               Cow position:chr17:25584490-25584216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 180

               
               
               Conread position:230-493
               
               
               Cow position:chr17:35149282-35149551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:230-494
               
               
               Cow position:chr17:3202165-3202437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr17:6318622-6318891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr17:8597863-8598129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):189, 202

               
               
               Conread position:230-494
               
               
               Cow position:chr17:12959349-12959081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr17:15102643-15102914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 263

               
               
               Conread position:230-494
               
               
               Cow position:chr17:16371503-16371232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:230-494
               
               
               Cow position:chr17:17410546-17410267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):74, 121

               
               
               Conread position:230-494
               
               
               Cow position:chr17:18766746-18767017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr17:21959437-21959710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 135

               
               
               Conread position:230-494
               
               
               Cow position:chr17:22051345-22051616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr17:24077633-24077380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr17:24824492-24824218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr17:25189533-25189264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr17:33288412-33288683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr17:34790819-34791090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):170, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr17:35051866-35051583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr17:40741900-40741625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):86, 72

               
               
               Conread position:230-496
               
               
               Cow position:chr17:1634245-1634521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:230-496
               
               
               Cow position:chr17:32349309-32349043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:231-342
               
               
               Cow position:chr17:42589545-42589435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:231-344
               
               
               Cow position:chr17:37152401-37152512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-366
               
               
               Cow position:chr17:11920784-11920920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-379
               
               
               Cow position:chr17:22772876-22773029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:231-382
               
               
               Cow position:chr17:1783381-1783527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-387
               
               
               Cow position:chr17:21312612-21312756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:231-392
               
               
               Cow position:chr17:26849523-26849685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:231-398
               
               
               Cow position:chr17:18928688-18928860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 164

               
               
               Conread position:231-399
               
               
               Cow position:chr17:24111358-24111524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr17:7554019-7554193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:231-406
               
               
               Cow position:chr17:8663752-8663575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:231-407
               
               
               Cow position:chr17:11055922-11056090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr17:20306578-20306386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 166

               
               
               Conread position:231-421
               
               
               Cow position:chr17:31231712-31231904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 183

               
               
               Conread position:231-430
               
               
               Cow position:chr17:8723197-8723388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:231-430
               
               
               Cow position:chr17:26225273-26225073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:231-438
               
               
               Cow position:chr17:4213982-4213780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:231-442
               
               
               Cow position:chr17:12510740-12510940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:231-442
               
               
               Cow position:chr17:14025661-14025877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr17:31856917-31856707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):188, 113

               
               
               Conread position:231-465
               
               
               Cow position:chr17:34078861-34079099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 221

               
               
               Conread position:231-472
               
               
               Cow position:chr17:22128167-22127923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):185, 17

               
               
               Conread position:231-490
               
               
               Cow position:chr17:40312944-40312686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:231-492
               
               
               Cow position:chr17:9824912-9824647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-492
               
               
               Cow position:chr17:29084412-29084158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-493
               
               
               Cow position:chr17:27303735-27303981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):180, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr17:5731163-5730903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:231-494
               
               
               Cow position:chr17:11839968-11839692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):130, 126

               
               
               Conread position:231-494
               
               
               Cow position:chr17:20992793-20993063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr17:25511487-25511218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-494
               
               
               Cow position:chr17:33793397-33793140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):188, 42

               
               
               Conread position:232-316
               
               
               Cow position:chr17:23736969-23736885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:77
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-361
               
               
               Cow position:chr17:23358356-23358237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-387
               
               
               Cow position:chr17:22241252-22241094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:232-390
               
               
               Cow position:chr17:17822331-17822177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-391
               
               
               Cow position:chr17:25352450-25352283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:232-411
               
               
               Cow position:chr17:35457574-35457750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):163, 88

               
               
               Conread position:232-414
               
               
               Cow position:chr17:10825720-10825543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:232-424
               
               
               Cow position:chr17:35043691-35043872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):187, 29

               
               
               Conread position:232-429
               
               
               Cow position:chr17:24895321-24895120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:232-439
               
               
               Cow position:chr17:21718753-21718960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:232-440
               
               
               Cow position:chr17:20929488-20929277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr17:946600-946391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-442
               
               
               Cow position:chr17:30501569-30501781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:232-442
               
               
               Cow position:chr17:32278660-32278874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:232-442
               
               
               Cow position:chr17:32280912-32280698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:232-444
               
               
               Cow position:chr17:18202005-18201789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 116

               
               
               Conread position:232-486
               
               
               Cow position:chr17:29026320-29026057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:232-490
               
               
               Cow position:chr17:24786781-24787043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:232-492
               
               
               Cow position:chr17:5280406-5280669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):112, 128

               
               
               Conread position:232-492
               
               
               Cow position:chr17:12306152-12306422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:232-492
               
               
               Cow position:chr17:12325526-12325785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:232-492
               
               
               Cow position:chr17:12929284-12929559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:232-493
               
               
               Cow position:chr17:8836707-8836972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:232-493
               
               
               Cow position:chr17:26818228-26818482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-493
               
               
               Cow position:chr17:40332023-40331745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 182

               
               
               Conread position:232-494
               
               
               Cow position:chr17:7810503-7810768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 215

               
               
               Conread position:232-494
               
               
               Cow position:chr17:17044090-17044357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:232-494
               
               
               Cow position:chr17:21039800-21039538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr17:25513874-25514147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr17:29355999-29356258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):193, 73

               
               
               Conread position:232-494
               
               
               Cow position:chr17:32332848-32333116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:232-494
               
               
               Cow position:chr17:34948881-34948615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 194

               
               
               Conread position:233-354
               
               
               Cow position:chr17:20930546-20930428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr17:26183590-26183407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:233-416
               
               
               Cow position:chr17:43860035-43859858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr17:28465670-28465484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr17:33653450-33653630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:233-442
               
               
               Cow position:chr17:42150630-42150425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):185, 10

               
               
               Conread position:233-444
               
               
               Cow position:chr17:26757201-26757416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:233-474
               
               
               Cow position:chr17:21471944-21472185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 89

               
               
               Conread position:233-490
               
               
               Cow position:chr17:16446183-16446455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 137

               
               
               Conread position:233-491
               
               
               Cow position:chr17:32418874-32419135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:233-494
               
               
               Cow position:chr17:17193733-17193470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):68, 203

               
               
               Conread position:233-494
               
               
               Cow position:chr17:20780768-20780487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:233-494
               
               
               Cow position:chr17:27429799-27429552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 58

               
               
               Conread position:233-494
               
               
               Cow position:chr17:32471547-32471808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):186, 13

               
               
               Conread position:233-494
               
               
               Cow position:chr17:37815946-37816214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:233-496
               
               
               Cow position:chr17:11912262-11912533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:234-312
               
               
               Cow position:chr17:41912857-41912779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr17:35140612-35140760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:234-377
               
               
               Cow position:chr17:35935402-35935259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):123, 127

               
               
               Conread position:234-386
               
               
               Cow position:chr17:10037651-10037498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:234-397
               
               
               Cow position:chr17:5898282-5898447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:234-407
               
               
               Cow position:chr17:40277717-40277890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:234-417
               
               
               Cow position:chr17:9509752-9509936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:234-417
               
               
               Cow position:chr17:18146432-18146245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 86

               
               
               Conread position:234-417
               
               
               Cow position:chr17:19471531-19471711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr17:39964119-39963937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:234-424
               
               
               Cow position:chr17:11985644-11985826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:234-424
               
               
               Cow position:chr17:25702846-25702654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:234-430
               
               
               Cow position:chr17:19899142-19898936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-440
               
               
               Cow position:chr17:31991172-31990969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:234-442
               
               
               Cow position:chr17:11618829-11618622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 176

               
               
               Conread position:234-442
               
               
               Cow position:chr17:13243812-13244011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):185, 25

               
               
               Conread position:234-444
               
               
               Cow position:chr17:16868034-16868236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):185, 13

               
               
               Conread position:234-468
               
               
               Cow position:chr17:22056772-22057021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:234-486
               
               
               Cow position:chr17:3389076-3388808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 178

               
               
               Conread position:234-487
               
               
               Cow position:chr17:24004615-24004355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 68

               
               
               Conread position:234-490
               
               
               Cow position:chr17:5012083-5011829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 202

               
               
               Conread position:234-493
               
               
               Cow position:chr17:20022272-20022539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):185, 86

               
               
               Conread position:234-493
               
               
               Cow position:chr17:25342498-25342762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 127

               
               
               Conread position:234-494
               
               
               Cow position:chr17:1469608-1469352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):127, 72

               
               
               Conread position:234-494
               
               
               Cow position:chr17:4299700-4299953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):150, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr17:5422837-5423096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):185, 13

               
               
               Conread position:234-494
               
               
               Cow position:chr17:20335887-20335641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:234-494
               
               
               Cow position:chr17:33154916-33155179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):210, 77

               
               
               Conread position:234-494
               
               
               Cow position:chr17:33275517-33275774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):205, 71

               
               
               Conread position:234-494
               
               
               Cow position:chr17:33933506-33933772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:235-372
               
               
               Cow position:chr17:4679967-4680104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:235-391
               
               
               Cow position:chr17:14668746-14668588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-392
               
               
               Cow position:chr17:34188120-34187961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-399
               
               
               Cow position:chr17:20855765-20855597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:235-409
               
               
               Cow position:chr17:37973817-37973999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr17:15883916-15883737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:235-411
               
               
               Cow position:chr17:25709956-25709778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:235-411
               
               
               Cow position:chr17:38536398-38536570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:235-414
               
               
               Cow position:chr17:9900144-9899966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:235-414
               
               
               Cow position:chr17:10454342-10454523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:235-414
               
               
               Cow position:chr17:15154643-15154827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:235-414
               
               
               Cow position:chr17:26631566-26631748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:235-414
               
               
               Cow position:chr17:36467947-36468128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:235-416
               
               
               Cow position:chr17:12963374-12963546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:235-423
               
               
               Cow position:chr17:22081282-22081463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):184, 83

               
               
               Conread position:235-424
               
               
               Cow position:chr17:7571348-7571155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):6, 129

               
               
               Conread position:235-431
               
               
               Cow position:chr17:21677132-21676935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr17:10508193-10508400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:235-459
               
               
               Cow position:chr17:28795739-28795962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:235-463
               
               
               Cow position:chr17:41616980-41616746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:235-472
               
               
               Cow position:chr17:12019318-12019540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:235-487
               
               
               Cow position:chr17:9932070-9932319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):184, 68

               
               
               Conread position:235-489
               
               
               Cow position:chr17:22189672-22189419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:235-490
               
               
               Cow position:chr17:7590215-7590479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 239

               
               
               Conread position:235-492
               
               
               Cow position:chr17:20071862-20072112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr17:3883501-3883771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr17:7802931-7803199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):77, 228

               
               
               Conread position:235-494
               
               
               Cow position:chr17:10458693-10458961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):184, 51

               
               
               Conread position:235-494
               
               
               Cow position:chr17:11994779-11995055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:235-494
               
               
               Cow position:chr17:13940077-13940342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 257

               
               
               Conread position:235-494
               
               
               Cow position:chr17:20801055-20800793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:235-494
               
               
               Cow position:chr17:24587864-24587598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 80

               
               
               Conread position:235-494
               
               
               Cow position:chr17:36814606-36814336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 129

               
               
               Conread position:235-496
               
               
               Cow position:chr17:1040969-1040720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:235-496
               
               
               Cow position:chr17:20032667-20032935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:237-411
               
               
               Cow position:chr17:19543993-19544167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:149
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):147, 86

               
               
               Conread position:237-430
               
               
               Cow position:chr17:1466177-1466370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:237-494
               
               
               Cow position:chr17:11101579-11101824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:237-494
               
               
               Cow position:chr17:11214995-11215255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:238-372
               
               
               Cow position:chr17:13478366-13478491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:238-429
               
               
               Cow position:chr17:5027227-5027413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):181, 9

               
               
               Conread position:238-430
               
               
               Cow position:chr17:18775952-18776139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:238-442
               
               
               Cow position:chr17:6566722-6566514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):84, 76

               
               
               Conread position:238-442
               
               
               Cow position:chr17:11296877-11296683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:238-469
               
               
               Cow position:chr17:7132186-7132434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 138

               
               
               Conread position:238-491
               
               
               Cow position:chr17:45296644-45296394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):210, 32

               
               
               Conread position:238-494
               
               
               Cow position:chr17:25901446-25901173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:238-496
               
               
               Cow position:chr17:17772179-17772452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 130

               
               
               Conread position:239-424
               
               
               Cow position:chr17:5344856-5344669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:239-493
               
               
               Cow position:chr17:1063406-1063157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:240-360
               
               
               Cow position:chr17:24826847-24826968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:240-378
               
               
               Cow position:chr17:30156184-30156322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:240-379
               
               
               Cow position:chr17:20782961-20783096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr17:3541944-3541799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr17:24030004-24030145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr17:42675804-42675940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr17:15303737-15303896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr17:43970920-43971073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:240-399
               
               
               Cow position:chr17:30108666-30108517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 61

               
               
               Conread position:240-399
               
               
               Cow position:chr17:36943599-36943447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-404
               
               
               Cow position:chr17:9260375-9260539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr17:32978701-32978862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:240-408
               
               
               Cow position:chr17:30737686-30737512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):75, 6

               
               
               Conread position:240-411
               
               
               Cow position:chr17:33288255-33288413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr17:5038819-5038988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:240-414
               
               
               Cow position:chr17:41429355-41429524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 7

               
               
               Conread position:240-417
               
               
               Cow position:chr17:10221971-10222150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr17:13976473-13976651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 51

               
               
               Conread position:240-417
               
               
               Cow position:chr17:20932565-20932391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:240-417
               
               
               Cow position:chr17:32220646-32220826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:240-417
               
               
               Cow position:chr17:36432135-36431956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr17:15334257-15334438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:240-422
               
               
               Cow position:chr17:27795891-27795709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:240-422
               
               
               Cow position:chr17:30513775-30513950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr17:42259437-42259269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:240-429
               
               
               Cow position:chr17:10016513-10016326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:240-434
               
               
               Cow position:chr17:9077977-9078179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr17:4817766-4817562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:240-442
               
               
               Cow position:chr17:11397903-11397701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:240-442
               
               
               Cow position:chr17:26231201-26230988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 131

               
               
               Conread position:240-442
               
               
               Cow position:chr17:43957897-43957694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:240-460
               
               
               Cow position:chr17:36178814-36179027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):179, 33

               
               
               Conread position:240-468
               
               
               Cow position:chr17:26637620-26637854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:240-469
               
               
               Cow position:chr17:9965786-9966019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:240-490
               
               
               Cow position:chr17:21744172-21743918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:240-490
               
               
               Cow position:chr17:27183706-27183962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:240-492
               
               
               Cow position:chr17:21114719-21114976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-493
               
               
               Cow position:chr17:11664341-11664611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr17:3467987-3467735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr17:4786245-4786519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr17:6423990-6423737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr17:7693306-7693040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:240-494
               
               
               Cow position:chr17:9950420-9950688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-494
               
               
               Cow position:chr17:24559529-24559270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:240-494
               
               
               Cow position:chr17:40250646-40250401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 64

               
               
               Conread position:240-496
               
               
               Cow position:chr17:30728743-30728481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:240-496
               
               
               Cow position:chr17:36330731-36330984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:241-389
               
               
               Cow position:chr17:32008318-32008463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:241-399
               
               
               Cow position:chr17:17265895-17266057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr17:24987437-24987270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:241-417
               
               
               Cow position:chr17:18267495-18267321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:241-427
               
               
               Cow position:chr17:5857333-5857524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:241-442
               
               
               Cow position:chr17:7959414-7959214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):170, 73

               
               
               Conread position:241-442
               
               
               Cow position:chr17:27440412-27440210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:241-472
               
               
               Cow position:chr17:1562556-1562782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):159, 70

               
               
               Conread position:241-483
               
               
               Cow position:chr17:42419940-42419707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:241-490
               
               
               Cow position:chr17:36791359-36791113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:241-494
               
               
               Cow position:chr17:33067332-33067584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:242-390
               
               
               Cow position:chr17:27922487-27922632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:242-397
               
               
               Cow position:chr17:41009506-41009352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:242-405
               
               
               Cow position:chr17:33321733-33321898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr17:2729683-2729852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:242-444
               
               
               Cow position:chr17:15355168-15354963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:242-454
               
               
               Cow position:chr17:32143323-32143102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-493
               
               
               Cow position:chr17:11362410-11362157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:242-494
               
               
               Cow position:chr17:8815421-8815166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):177, 53

               
               
               Conread position:242-495
               
               
               Cow position:chr17:4264460-4264197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:243-411
               
               
               Cow position:chr17:28982410-28982247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:244-399
               
               
               Cow position:chr17:43717108-43717260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:244-489
               
               
               Cow position:chr17:24163266-24163018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:245-398
               
               
               Cow position:chr17:13290942-13291097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:245-414
               
               
               Cow position:chr17:21777959-21777789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:245-444
               
               
               Cow position:chr17:17222575-17222372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr17:10630751-10630903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:246-494
               
               
               Cow position:chr17:12109038-12108782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 170

               
               
               Conread position:247-414
               
               
               Cow position:chr17:7037391-7037561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:247-417
               
               
               Cow position:chr17:12887581-12887419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:247-494
               
               
               Cow position:chr17:5514986-5514736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:247-494
               
               
               Cow position:chr17:18818791-18818544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 45

               
               
               Conread position:247-494
               
               
               Cow position:chr17:26574993-26575255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:247-494
               
               
               Cow position:chr17:28284807-28285055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:247-494
               
               
               Cow position:chr17:30529318-30529565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:248-392
               
               
               Cow position:chr17:20199125-20199265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):93, 75

               
               
               Conread position:248-399
               
               
               Cow position:chr17:38736659-38736516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:248-400
               
               
               Cow position:chr17:21910303-21910455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:248-406
               
               
               Cow position:chr17:25095714-25095552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr17:24767060-24767228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:248-423
               
               
               Cow position:chr17:35311747-35311587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr17:6005028-6004837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:248-442
               
               
               Cow position:chr17:8986373-8986572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr17:11224338-11224138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 151

               
               
               Conread position:248-442
               
               
               Cow position:chr17:27665888-27666072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):171, 32

               
               
               Conread position:248-489
               
               
               Cow position:chr17:24773904-24773679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 72

               
               
               Conread position:248-490
               
               
               Cow position:chr17:26789643-26789400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):120, 31

               
               
               Conread position:248-494
               
               
               Cow position:chr17:5349895-5350149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):171, 153

               
               
               Conread position:248-494
               
               
               Cow position:chr17:10431736-10432000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:249-436
               
               
               Cow position:chr17:28529082-28528898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:249-494
               
               
               Cow position:chr17:23100995-23101232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:249-494
               
               
               Cow position:chr17:29080764-29080519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:250-411
               
               
               Cow position:chr17:20881589-20881743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr17:8137628-8137465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:250-442
               
               
               Cow position:chr17:24862681-24862492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):166, 64

               
               
               Conread position:250-494
               
               
               Cow position:chr17:6329338-6329090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):169, 64

               
               
               Conread position:250-495
               
               
               Cow position:chr17:950201-949949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:251-397
               
               
               Cow position:chr17:21335326-21335483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:251-417
               
               
               Cow position:chr17:31754547-31754715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 60

               
               
               Conread position:252-407
               
               
               Cow position:chr17:24757747-24757597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:252-442
               
               
               Cow position:chr17:25594464-25594657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 68

               
               
               Conread position:252-485
               
               
               Cow position:chr17:5012844-5013092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:256-429
               
               
               Cow position:chr17:25348586-25348415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):163, 9

               
               
               Conread position:257-494
               
               
               Cow position:chr17:18473382-18473148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:259-396
               
               
               Cow position:chr17:38483579-38483716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 102

               
               
               Conread position:259-487
               
               
               Cow position:chr17:8823540-8823292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:263-496
               
               
               Cow position:chr17:3371835-3371608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:266-416
               
               
               Cow position:chr17:20270165-20270012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:270-414
               
               
               Cow position:chr17:9697474-9697619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:272-405
               
               
               Cow position:chr17:1282052-1282186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:274-387
               
               
               Cow position:chr17:31985738-31985851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-493
               
               
               Cow position:chr17:25097655-25097440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):156, 44

               
               
               Conread position:274-493
               
               
               Cow position:chr17:30665474-30665249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:276-494
               
               
               Cow position:chr17:18108886-18109109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:280-435
               
               
               Cow position:chr17:969081-968925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:280-490
               
               
               Cow position:chr17:22048591-22048811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:281-397
               
               
               Cow position:chr17:44851063-44851178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:281-494
               
               
               Cow position:chr17:18495324-18495544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 119

               
               
               Conread position:282-429
               
               
               Cow position:chr17:24790022-24789868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:284-390
               
               
               Cow position:chr17:5044141-5044245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:286-494
               
               
               Cow position:chr17:35338724-35338939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:292-390
               
               
               Cow position:chr17:15564613-15564515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr17:5743118-5743257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:302-442
               
               
               Cow position:chr17:9713167-9713308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr17:20874570-20874430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:302-442
               
               
               Cow position:chr17:29075908-29076049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:302-492
               
               
               Cow position:chr17:1410064-1410261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:302-493
               
               
               Cow position:chr17:9117819-9117624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-493
               
               
               Cow position:chr17:18592616-18592416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:302-494
               
               
               Cow position:chr17:11306385-11306196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:302-494
               
               
               Cow position:chr17:22016916-22017111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:302-494
               
               
               Cow position:chr17:24554172-24553983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:302-494
               
               
               Cow position:chr17:27202873-27203067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:302-496
               
               
               Cow position:chr17:15340577-15340779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 164

               
               
               Conread position:303-467
               
               
               Cow position:chr17:3097482-3097650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 161

               
               
               Conread position:303-494
               
               
               Cow position:chr17:8079486-8079293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr17:32273515-32273710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:304-494
               
               
               Cow position:chr17:23516772-23516966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:305-494
               
               
               Cow position:chr17:29157588-29157391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr17:9911927-9911733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 94

               
               
               Conread position:308-442
               
               
               Cow position:chr17:37430338-37430471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:312-494
               
               
               Cow position:chr17:27048320-27048134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:312-494
               
               
               Cow position:chr17:39736337-39736150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:315-442
               
               
               Cow position:chr17:8108196-8108320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:318-494
               
               
               Cow position:chr17:40406605-40406420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 163

               
               
               Conread position:324-442
               
               
               Cow position:chr17:11478922-11478803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-493
               
               
               Cow position:chr17:12591327-12591144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:324-493
               
               
               Cow position:chr17:21757988-21758161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr17:11156341-11156515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:327-494
               
               
               Cow position:chr17:33657919-33658094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:337-494
               
               
               Cow position:chr17:11368710-11368875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:198-386
               
               
               Cow position:chr18:47868799-47868622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:205-494
               
               
               Cow position:chr18:33159139-33158856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:206-373
               
               
               Cow position:chr18:11814496-11814334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:212-494
               
               
               Cow position:chr18:19193185-19193463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):210, 15

               
               
               Conread position:212-494
               
               
               Cow position:chr18:22789899-22790186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:212-494
               
               
               Cow position:chr18:41950401-41950119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:214-317
               
               
               Cow position:chr18:19676304-19676202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:214-420
               
               
               Cow position:chr18:23821640-23821849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:215-440
               
               
               Cow position:chr18:11857086-11856863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:216-494
               
               
               Cow position:chr18:2146409-2146685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):203, 23

               
               
               Conread position:219-399
               
               
               Cow position:chr18:51413764-51413595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:219-425
               
               
               Cow position:chr18:45573567-45573357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:220-492
               
               
               Cow position:chr18:11779832-11779558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:220-494
               
               
               Cow position:chr18:6310263-6309984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:220-494
               
               
               Cow position:chr18:18592650-18592378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:220-494
               
               
               Cow position:chr18:50382433-50382158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:221-342
               
               
               Cow position:chr18:48158805-48158688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:221-417
               
               
               Cow position:chr18:23898595-23898404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:221-440
               
               
               Cow position:chr18:27079048-27078830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 142

               
               
               Conread position:221-442
               
               
               Cow position:chr18:9846238-9846450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):195, 83

               
               
               Conread position:221-492
               
               
               Cow position:chr18:6005320-6005598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:222-361
               
               
               Cow position:chr18:21410866-21410728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):109, 93

               
               
               Conread position:222-372
               
               
               Cow position:chr18:15340317-15340463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 36

               
               
               Conread position:222-431
               
               
               Cow position:chr18:41724634-41724847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:222-442
               
               
               Cow position:chr18:4851305-4851519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:222-444
               
               
               Cow position:chr18:23941436-23941665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:222-490
               
               
               Cow position:chr18:51757275-51757002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:222-492
               
               
               Cow position:chr18:9974150-9974419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 92

               
               
               Conread position:222-494
               
               
               Cow position:chr18:45104252-45104542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:222-494
               
               
               Cow position:chr18:46452703-46452978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:222-496
               
               
               Cow position:chr18:9558146-9557884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):197, 61

               
               
               Conread position:223-380
               
               
               Cow position:chr18:56361206-56361359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:223-392
               
               
               Cow position:chr18:32170-32003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:223-398
               
               
               Cow position:chr18:50263750-50263918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:223-399
               
               
               Cow position:chr18:50276059-50276239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:223-417
               
               
               Cow position:chr18:45897906-45897718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:223-468
               
               
               Cow position:chr18:12113189-12113432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):196, 76

               
               
               Conread position:223-492
               
               
               Cow position:chr18:10891691-10891418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 51

               
               
               Conread position:223-494
               
               
               Cow position:chr18:38523832-38523574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):220, 68

               
               
               Conread position:223-496
               
               
               Cow position:chr18:11791096-11790822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:224-441
               
               
               Cow position:chr18:2773207-2773431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:224-441
               
               
               Cow position:chr18:2776710-2776934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:224-494
               
               
               Cow position:chr18:55120045-55119772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):135, 42

               
               
               Conread position:225-333
               
               
               Cow position:chr18:54928140-54928248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-351
               
               
               Cow position:chr18:35112130-35112253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:225-390
               
               
               Cow position:chr18:19831752-19831595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:225-392
               
               
               Cow position:chr18:55039780-55039628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:225-397
               
               
               Cow position:chr18:20998233-20998409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:225-408
               
               
               Cow position:chr18:32290878-32290707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:225-414
               
               
               Cow position:chr18:26262034-26262224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 123

               
               
               Conread position:225-417
               
               
               Cow position:chr18:39460394-39460206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:225-417
               
               
               Cow position:chr18:45186052-45185858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:225-431
               
               
               Cow position:chr18:11434930-11434724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:225-442
               
               
               Cow position:chr18:3212056-3211838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 5

               
               
               Conread position:225-442
               
               
               Cow position:chr18:7965408-7965192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):98, 5

               
               
               Conread position:225-494
               
               
               Cow position:chr18:22180603-22180882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:226-336
               
               
               Cow position:chr18:51301913-51302023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-393
               
               
               Cow position:chr18:34876948-34876780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):106, 162

               
               
               Conread position:226-431
               
               
               Cow position:chr18:51383223-51383426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):190, 15

               
               
               Conread position:226-442
               
               
               Cow position:chr18:51192572-51192780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):193, 40

               
               
               Conread position:226-490
               
               
               Cow position:chr18:22055683-22055969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:226-494
               
               
               Cow position:chr18:32883470-32883209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:227-319
               
               
               Cow position:chr18:53039024-53038932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:79
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-354
               
               
               Cow position:chr18:30295434-30295557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:227-364
               
               
               Cow position:chr18:18722247-18722115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:227-364
               
               
               Cow position:chr18:51398160-51398294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr18:42967280-42967133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:227-385
               
               
               Cow position:chr18:4857547-4857706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:227-389
               
               
               Cow position:chr18:4907319-4907161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr18:47680684-47680528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr18:47865241-47865085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr18:21676684-21676855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr18:37800161-37799990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:227-397
               
               
               Cow position:chr18:14871429-14871598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 134

               
               
               Conread position:227-397
               
               
               Cow position:chr18:36500907-36501072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):106, 77

               
               
               Conread position:227-399
               
               
               Cow position:chr18:16313551-16313383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr18:44044165-44044339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 143

               
               
               Conread position:227-399
               
               
               Cow position:chr18:51259321-51259148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:227-406
               
               
               Cow position:chr18:6818492-6818671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:227-407
               
               
               Cow position:chr18:21528825-21528643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-407
               
               
               Cow position:chr18:49280888-49281067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:227-411
               
               
               Cow position:chr18:16137103-16137288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:227-414
               
               
               Cow position:chr18:19230098-19229907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 139

               
               
               Conread position:227-417
               
               
               Cow position:chr18:11233596-11233400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:227-417
               
               
               Cow position:chr18:19765359-19765175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr18:47872210-47872019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:227-425
               
               
               Cow position:chr18:31556982-31557180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-430
               
               
               Cow position:chr18:29065217-29065411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:227-430
               
               
               Cow position:chr18:49602867-49603071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 134

               
               
               Conread position:227-431
               
               
               Cow position:chr18:35786228-35786027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):192, 74

               
               
               Conread position:227-442
               
               
               Cow position:chr18:20462532-20462735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr18:23169755-23169538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:227-442
               
               
               Cow position:chr18:50567079-50566861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-443
               
               
               Cow position:chr18:4152377-4152596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:227-449
               
               
               Cow position:chr18:14225563-14225346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:227-454
               
               
               Cow position:chr18:7956324-7956099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:227-456
               
               
               Cow position:chr18:53092839-53093073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:227-470
               
               
               Cow position:chr18:55782259-55782498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):192, 32

               
               
               Conread position:227-479
               
               
               Cow position:chr18:12117678-12117928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):160, 81

               
               
               Conread position:227-489
               
               
               Cow position:chr18:5632440-5632173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-490
               
               
               Cow position:chr18:12273832-12273564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:227-492
               
               
               Cow position:chr18:4626616-4626874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:227-492
               
               
               Cow position:chr18:23630440-23630703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):188, 76

               
               
               Conread position:227-493
               
               
               Cow position:chr18:33896239-33896526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:227-493
               
               
               Cow position:chr18:43796784-43797050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 72

               
               
               Conread position:227-494
               
               
               Cow position:chr18:6881181-6881447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr18:7650150-7649900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):192, 46

               
               
               Conread position:227-494
               
               
               Cow position:chr18:9010879-9010624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr18:10905023-10904750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr18:37023361-37023650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr18:47512168-47511908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):192, 23

               
               
               Conread position:227-494
               
               
               Cow position:chr18:49017658-49017405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):191, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr18:51178539-51178814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:227-496
               
               
               Cow position:chr18:11578231-11577985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):192, 19

               
               
               Conread position:227-496
               
               
               Cow position:chr18:15516997-15517276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:228-379
               
               
               Cow position:chr18:2553745-2553893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-407
               
               
               Cow position:chr18:34490455-34490276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):129, 95

               
               
               Conread position:228-414
               
               
               Cow position:chr18:21401124-21401312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:228-420
               
               
               Cow position:chr18:7945374-7945181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:228-421
               
               
               Cow position:chr18:42431918-42432105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):125, 89

               
               
               Conread position:228-442
               
               
               Cow position:chr18:47125238-47125440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):188, 84

               
               
               Conread position:228-490
               
               
               Cow position:chr18:2619032-2619306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:228-494
               
               
               Cow position:chr18:11691234-11691505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:228-494
               
               
               Cow position:chr18:12242450-12242177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:229-351
               
               
               Cow position:chr18:12026687-12026567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:229-353
               
               
               Cow position:chr18:55109437-55109560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:229-376
               
               
               Cow position:chr18:6102789-6102936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:229-389
               
               
               Cow position:chr18:29264192-29264341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:229-390
               
               
               Cow position:chr18:21562750-21562913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:229-399
               
               
               Cow position:chr18:19701859-19701680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:229-422
               
               
               Cow position:chr18:42978457-42978665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:229-442
               
               
               Cow position:chr18:3209892-3209686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):190, 92

               
               
               Conread position:229-443
               
               
               Cow position:chr18:54513291-54513075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:229-485
               
               
               Cow position:chr18:32410842-32411098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 123

               
               
               Conread position:229-494
               
               
               Cow position:chr18:5766583-5766315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:229-494
               
               
               Cow position:chr18:9066873-9066595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):180, 89

               
               
               Conread position:229-494
               
               
               Cow position:chr18:26939145-26938882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):190, 41

               
               
               Conread position:230-352
               
               
               Cow position:chr18:37758821-37758938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-360
               
               
               Cow position:chr18:38669651-38669785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr18:30247833-30247973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-374
               
               
               Cow position:chr18:25139733-25139589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-379
               
               
               Cow position:chr18:25757142-25757292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 94

               
               
               Conread position:230-383
               
               
               Cow position:chr18:7487407-7487252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-386
               
               
               Cow position:chr18:43057065-43056908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:230-391
               
               
               Cow position:chr18:20226294-20226144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:230-393
               
               
               Cow position:chr18:52406233-52406075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr18:10214019-10214185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:230-399
               
               
               Cow position:chr18:1549368-1549545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr18:50283652-50283815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):167, 16

               
               
               Conread position:230-405
               
               
               Cow position:chr18:20057340-20057174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:230-406
               
               
               Cow position:chr18:18320376-18320563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 69

               
               
               Conread position:230-407
               
               
               Cow position:chr18:35857752-35857928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-409
               
               
               Cow position:chr18:47175206-47175387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 146

               
               
               Conread position:230-410
               
               
               Cow position:chr18:39689962-39689780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):83, 95

               
               
               Conread position:230-411
               
               
               Cow position:chr18:16382033-16381850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr18:17195174-17195353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:230-414
               
               
               Cow position:chr18:23921522-23921713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr18:46048236-46048050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:230-414
               
               
               Cow position:chr18:56463556-56463741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):85, 147

               
               
               Conread position:230-416
               
               
               Cow position:chr18:21969629-21969818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr18:35950217-35950022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr18:7951287-7951101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:230-417
               
               
               Cow position:chr18:24946252-24946074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 88

               
               
               Conread position:230-417
               
               
               Cow position:chr18:25107120-25106931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr18:27637664-27637478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:230-417
               
               
               Cow position:chr18:33492519-33492346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr18:36734388-36734577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr18:44909224-44909039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:230-417
               
               
               Cow position:chr18:45899067-45898878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr18:46276127-46276316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:230-417
               
               
               Cow position:chr18:46880535-46880719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:230-417
               
               
               Cow position:chr18:52383079-52382890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr18:55549904-55549716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 179

               
               
               Conread position:230-418
               
               
               Cow position:chr18:14201068-14201258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-420
               
               
               Cow position:chr18:30225357-30225547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-420
               
               
               Cow position:chr18:39114946-39115135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:230-424
               
               
               Cow position:chr18:11330395-11330197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:230-426
               
               
               Cow position:chr18:50004534-50004726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-431
               
               
               Cow position:chr18:7952382-7952175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 123

               
               
               Conread position:230-431
               
               
               Cow position:chr18:19614079-19613883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-431
               
               
               Cow position:chr18:49161127-49161332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:230-437
               
               
               Cow position:chr18:34444565-34444768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):186, 84

               
               
               Conread position:230-441
               
               
               Cow position:chr18:52414139-52413927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:230-442
               
               
               Cow position:chr18:5072245-5072450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:230-442
               
               
               Cow position:chr18:10322968-10322766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):189, 71

               
               
               Conread position:230-442
               
               
               Cow position:chr18:12584672-12584879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):189, 60

               
               
               Conread position:230-442
               
               
               Cow position:chr18:23649098-23648882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr18:27388768-27388544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr18:44917926-44917717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:230-442
               
               
               Cow position:chr18:52251682-52251897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:230-443
               
               
               Cow position:chr18:2793804-2794012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):189, 92

               
               
               Conread position:230-444
               
               
               Cow position:chr18:35827206-35827415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:230-449
               
               
               Cow position:chr18:8208251-8208472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:230-465
               
               
               Cow position:chr18:46879988-46880230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:230-485
               
               
               Cow position:chr18:19868086-19868352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-488
               
               
               Cow position:chr18:39662953-39662688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:230-490
               
               
               Cow position:chr18:6609675-6609951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-492
               
               
               Cow position:chr18:17974795-17974547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):189, 13

               
               
               Conread position:230-492
               
               
               Cow position:chr18:20641329-20641584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):189, 77

               
               
               Conread position:230-493
               
               
               Cow position:chr18:15173176-15172924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:230-493
               
               
               Cow position:chr18:22120713-22120977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:230-493
               
               
               Cow position:chr18:53642582-53642849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr18:728193-727935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):168, 59

               
               
               Conread position:230-494
               
               
               Cow position:chr18:1399180-1399449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr18:1954408-1954688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:230-494
               
               
               Cow position:chr18:8170919-8171183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr18:8880328-8880060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:230-494
               
               
               Cow position:chr18:10977043-10977310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr18:19688200-19687923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:230-494
               
               
               Cow position:chr18:29958009-29958257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):189, 20

               
               
               Conread position:230-494
               
               
               Cow position:chr18:30359971-30360241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 240

               
               
               Conread position:230-494
               
               
               Cow position:chr18:35453101-35452827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr18:41257745-41258001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 152

               
               
               Conread position:230-494
               
               
               Cow position:chr18:52637355-52637617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr18:54572113-54572389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:230-494
               
               
               Cow position:chr18:55692990-55692715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:231-341
               
               
               Cow position:chr18:21608667-21608777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-351
               
               
               Cow position:chr18:52626339-52626222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:231-382
               
               
               Cow position:chr18:16417326-16417474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr18:38601713-38601880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:231-406
               
               
               Cow position:chr18:33883951-33883777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:231-414
               
               
               Cow position:chr18:19809512-19809693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-426
               
               
               Cow position:chr18:25598062-25598256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:231-427
               
               
               Cow position:chr18:24508062-24508253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:231-437
               
               
               Cow position:chr18:51395723-51395920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:231-442
               
               
               Cow position:chr18:11657830-11657617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 160

               
               
               Conread position:231-442
               
               
               Cow position:chr18:11867509-11867297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):146, 87

               
               
               Conread position:231-442
               
               
               Cow position:chr18:36768643-36768851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:231-442
               
               
               Cow position:chr18:45558314-45558107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):168, 85

               
               
               Conread position:231-442
               
               
               Cow position:chr18:50632274-50632482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):188, 70

               
               
               Conread position:231-443
               
               
               Cow position:chr18:3180581-3180370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-488
               
               
               Cow position:chr18:12059165-12058912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):170, 83

               
               
               Conread position:231-489
               
               
               Cow position:chr18:4884348-4884612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):99, 92

               
               
               Conread position:231-491
               
               
               Cow position:chr18:32251994-32252264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:231-493
               
               
               Cow position:chr18:50959660-50959389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:231-494
               
               
               Cow position:chr18:2591989-2592265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 177

               
               
               Conread position:231-494
               
               
               Cow position:chr18:3158412-3158699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr18:7414863-7415123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):145, 77

               
               
               Conread position:231-494
               
               
               Cow position:chr18:10954635-10954381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr18:12023468-12023732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr18:15613693-15613953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-494
               
               
               Cow position:chr18:28101805-28101534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:231-494
               
               
               Cow position:chr18:42292893-42293150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:231-494
               
               
               Cow position:chr18:43555342-43555622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 200

               
               
               Conread position:231-494
               
               
               Cow position:chr18:48713713-48713452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:231-494
               
               
               Cow position:chr18:55499241-55498972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):188, 88

               
               
               Conread position:232-316
               
               
               Cow position:chr18:51190338-51190422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-347
               
               
               Cow position:chr18:18956712-18956825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-377
               
               
               Cow position:chr18:18816101-18815954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:232-385
               
               
               Cow position:chr18:10117906-10117758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:232-398
               
               
               Cow position:chr18:2576523-2576695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr18:40028394-40028211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr18:49441013-49440837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):97, 82

               
               
               Conread position:232-410
               
               
               Cow position:chr18:49040435-49040623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 131

               
               
               Conread position:232-411
               
               
               Cow position:chr18:30341012-30341192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr18:21187469-21187296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:232-415
               
               
               Cow position:chr18:43400555-43400730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):168, 35

               
               
               Conread position:232-417
               
               
               Cow position:chr18:39097402-39097590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:232-424
               
               
               Cow position:chr18:641145-641343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):136, 86

               
               
               Conread position:232-429
               
               
               Cow position:chr18:35715436-35715638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:232-431
               
               
               Cow position:chr18:48407902-48407710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):187, 37

               
               
               Conread position:232-432
               
               
               Cow position:chr18:19961966-19962173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr18:18844181-18843974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):182, 83

               
               
               Conread position:232-442
               
               
               Cow position:chr18:31672348-31672552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-442
               
               
               Cow position:chr18:47824604-47824809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:232-464
               
               
               Cow position:chr18:3417336-3417101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 162

               
               
               Conread position:232-464
               
               
               Cow position:chr18:38937990-38937756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-468
               
               
               Cow position:chr18:37189122-37189364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:232-469
               
               
               Cow position:chr18:31082173-31082418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):70, 230

               
               
               Conread position:232-490
               
               
               Cow position:chr18:25006335-25006582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:232-490
               
               
               Cow position:chr18:51405747-51405999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-491
               
               
               Cow position:chr18:39875075-39875353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):73, 148

               
               
               Conread position:232-493
               
               
               Cow position:chr18:5578465-5578210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):187, 76

               
               
               Conread position:232-493
               
               
               Cow position:chr18:43283586-43283854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:232-494
               
               
               Cow position:chr18:3085337-3085612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):80, 245

               
               
               Conread position:232-494
               
               
               Cow position:chr18:30586066-30586320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):193, 75

               
               
               Conread position:232-494
               
               
               Cow position:chr18:31711407-31711665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:232-494
               
               
               Cow position:chr18:41024948-41025245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr18:42431444-42431710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:232-494
               
               
               Cow position:chr18:50095239-50095495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr18:54130172-54130431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:232-495
               
               
               Cow position:chr18:32243570-32243825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):187, 84

               
               
               Conread position:233-372
               
               
               Cow position:chr18:18520632-18520770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:233-391
               
               
               Cow position:chr18:56011209-56011369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:233-406
               
               
               Cow position:chr18:56183331-56183509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr18:16356325-16356499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):167, 30

               
               
               Conread position:233-417
               
               
               Cow position:chr18:35888919-35889113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:233-431
               
               
               Cow position:chr18:35581885-35582067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):186, 10

               
               
               Conread position:233-434
               
               
               Cow position:chr18:39860609-39860801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:233-438
               
               
               Cow position:chr18:911954-912139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:233-442
               
               
               Cow position:chr18:135491-135694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:233-449
               
               
               Cow position:chr18:29390041-29390244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):165, 35

               
               
               Conread position:233-469
               
               
               Cow position:chr18:4489732-4489976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-471
               
               
               Cow position:chr18:37187825-37188064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:233-490
               
               
               Cow position:chr18:1144023-1144279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:233-490
               
               
               Cow position:chr18:46048923-46048666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):54, 217

               
               
               Conread position:233-490
               
               
               Cow position:chr18:47417169-47416900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:233-493
               
               
               Cow position:chr18:7109300-7109032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 105

               
               
               Conread position:233-493
               
               
               Cow position:chr18:42479411-42479684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr18:4264227-4264488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):124, 67

               
               
               Conread position:233-494
               
               
               Cow position:chr18:9366091-9365819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr18:28657750-28658006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):186, 24

               
               
               Conread position:233-494
               
               
               Cow position:chr18:37303323-37303047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:233-496
               
               
               Cow position:chr18:9040535-9040810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-358
               
               
               Cow position:chr18:32960247-32960122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:234-385
               
               
               Cow position:chr18:33364378-33364230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):108, 83

               
               
               Conread position:234-397
               
               
               Cow position:chr18:10517275-10517108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:234-398
               
               
               Cow position:chr18:4718428-4718264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:234-406
               
               
               Cow position:chr18:1931291-1931461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):127, 69

               
               
               Conread position:234-414
               
               
               Cow position:chr18:4000518-4000335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr18:4485576-4485405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr18:10051914-10051733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:234-417
               
               
               Cow position:chr18:36450069-36449884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr18:43950996-43950812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:234-424
               
               
               Cow position:chr18:23380295-23380109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 49

               
               
               Conread position:234-427
               
               
               Cow position:chr18:41553197-41553396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 163

               
               
               Conread position:234-431
               
               
               Cow position:chr18:47801928-47802119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-446
               
               
               Cow position:chr18:29474906-29474699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):185, 64

               
               
               Conread position:234-469
               
               
               Cow position:chr18:16659260-16659502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:234-472
               
               
               Cow position:chr18:24719477-24719239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:234-493
               
               
               Cow position:chr18:55747856-55747590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):70, 134

               
               
               Conread position:234-494
               
               
               Cow position:chr18:1571071-1571334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:234-494
               
               
               Cow position:chr18:10065351-10065626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr18:18918795-18919054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):182, 86

               
               
               Conread position:234-494
               
               
               Cow position:chr18:20270843-20271117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:234-494
               
               
               Cow position:chr18:23623462-23623730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr18:38985859-38985594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):182, 72

               
               
               Conread position:235-372
               
               
               Cow position:chr18:1735431-1735568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:235-373
               
               
               Cow position:chr18:17756774-17756915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:235-389
               
               
               Cow position:chr18:35171516-35171362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:235-389
               
               
               Cow position:chr18:37690318-37690164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):123, 127

               
               
               Conread position:235-392
               
               
               Cow position:chr18:21723999-21724158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:235-395
               
               
               Cow position:chr18:17007317-17007472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:235-400
               
               
               Cow position:chr18:15351561-15351727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:235-414
               
               
               Cow position:chr18:52387051-52387231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):78, 66

               
               
               Conread position:235-417
               
               
               Cow position:chr18:2144737-2144557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:235-417
               
               
               Cow position:chr18:39811416-39811597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:235-417
               
               
               Cow position:chr18:49970484-49970667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:235-417
               
               
               Cow position:chr18:53954516-53954330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:235-419
               
               
               Cow position:chr18:9596344-9596167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-426
               
               
               Cow position:chr18:41703001-41702813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:235-430
               
               
               Cow position:chr18:21751547-21751347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-434
               
               
               Cow position:chr18:4530722-4530527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:235-439
               
               
               Cow position:chr18:8220006-8220208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:235-442
               
               
               Cow position:chr18:50359492-50359292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):184, 81

               
               
               Conread position:235-442
               
               
               Cow position:chr18:56155683-56155481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:235-444
               
               
               Cow position:chr18:38211326-38211119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-456
               
               
               Cow position:chr18:237947-238169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:235-492
               
               
               Cow position:chr18:32189351-32189607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):184, 8

               
               
               Conread position:235-493
               
               
               Cow position:chr18:23615708-23615979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:235-493
               
               
               Cow position:chr18:39623971-39623704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 129

               
               
               Conread position:235-494
               
               
               Cow position:chr18:14586312-14586562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:235-494
               
               
               Cow position:chr18:16545295-16545561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:235-494
               
               
               Cow position:chr18:19641141-19640883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr18:23163061-23162795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:235-494
               
               
               Cow position:chr18:29372037-29371771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:235-494
               
               
               Cow position:chr18:49038620-49038362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):184, 12

               
               
               Conread position:235-494
               
               
               Cow position:chr18:56181291-56181561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:236-391
               
               
               Cow position:chr18:34389215-34389371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:236-391
               
               
               Cow position:chr18:50384279-50384122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:236-490
               
               
               Cow position:chr18:47486212-47485959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:236-494
               
               
               Cow position:chr18:20126458-20126208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):183, 78

               
               
               Conread position:237-411
               
               
               Cow position:chr18:39710280-39710099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:237-494
               
               
               Cow position:chr18:18961667-18961934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 110

               
               
               Conread position:238-389
               
               
               Cow position:chr18:10757893-10758041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:238-397
               
               
               Cow position:chr18:44548583-44548740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr18:43014706-43014900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr18:48633941-48633690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:239-373
               
               
               Cow position:chr18:18496724-18496592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:239-386
               
               
               Cow position:chr18:48000665-48000809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:239-399
               
               
               Cow position:chr18:49126861-49127013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:239-404
               
               
               Cow position:chr18:3097862-3098033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:239-407
               
               
               Cow position:chr18:104219-104045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:239-410
               
               
               Cow position:chr18:39168693-39168525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-416
               
               
               Cow position:chr18:3066499-3066332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:239-442
               
               
               Cow position:chr18:47547819-47548026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:239-494
               
               
               Cow position:chr18:42747762-42747495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):10, 179

               
               
               Conread position:240-351
               
               
               Cow position:chr18:1151785-1151894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-389
               
               
               Cow position:chr18:30676490-30676645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):69, 124

               
               
               Conread position:240-389
               
               
               Cow position:chr18:33757176-33757031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:240-389
               
               
               Cow position:chr18:35235859-35236009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:240-396
               
               
               Cow position:chr18:4485758-4485606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr18:3709393-3709235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:240-400
               
               
               Cow position:chr18:21050927-21051080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-404
               
               
               Cow position:chr18:44205932-44206085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr18:12143789-12143952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr18:9818925-9818765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr18:21143806-21143970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):156, 59

               
               
               Conread position:240-410
               
               
               Cow position:chr18:32295681-32295513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:240-417
               
               
               Cow position:chr18:31159110-31159287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:240-424
               
               
               Cow position:chr18:35795058-35795244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:240-430
               
               
               Cow position:chr18:18664203-18664401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:240-442
               
               
               Cow position:chr18:5647970-5647773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):179, 75

               
               
               Conread position:240-442
               
               
               Cow position:chr18:6470254-6470055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-465
               
               
               Cow position:chr18:15809649-15809864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):179, 63

               
               
               Conread position:240-478
               
               
               Cow position:chr18:5189529-5189769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:240-483
               
               
               Cow position:chr18:21782847-21782606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:240-487
               
               
               Cow position:chr18:12270674-12270409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 171

               
               
               Conread position:240-487
               
               
               Cow position:chr18:29648942-29648690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-487
               
               
               Cow position:chr18:45903734-45903986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):179, 160

               
               
               Conread position:240-492
               
               
               Cow position:chr18:44262785-44262531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):166, 76

               
               
               Conread position:240-493
               
               
               Cow position:chr18:22568906-22569164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):115, 43

               
               
               Conread position:240-494
               
               
               Cow position:chr18:9029775-9029518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 207

               
               
               Conread position:240-494
               
               
               Cow position:chr18:9089853-9089600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):160, 40

               
               
               Conread position:240-494
               
               
               Cow position:chr18:17390828-17391080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 147

               
               
               Conread position:240-494
               
               
               Cow position:chr18:28930479-28930737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:240-494
               
               
               Cow position:chr18:40759383-40759109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr18:49100223-49100467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):180, 64

               
               
               Conread position:240-496
               
               
               Cow position:chr18:37002799-37002534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:241-399
               
               
               Cow position:chr18:39972687-39972535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:241-405
               
               
               Cow position:chr18:55722661-55722499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:241-412
               
               
               Cow position:chr18:44514251-44514078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:241-417
               
               
               Cow position:chr18:2108409-2108233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:241-422
               
               
               Cow position:chr18:23652952-23653136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:241-440
               
               
               Cow position:chr18:50974127-50974332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:241-442
               
               
               Cow position:chr18:4495729-4495926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):178, 40

               
               
               Conread position:241-442
               
               
               Cow position:chr18:4556003-4556206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 163

               
               
               Conread position:241-442
               
               
               Cow position:chr18:4757872-4758072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:241-442
               
               
               Cow position:chr18:14172052-14172247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:241-444
               
               
               Cow position:chr18:53053068-53053276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:241-492
               
               
               Cow position:chr18:49015277-49015030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):178, 49

               
               
               Conread position:241-494
               
               
               Cow position:chr18:247536-247779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr18:3132612-3132853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr18:34219745-34220019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr18:35367044-35367284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:241-494
               
               
               Cow position:chr18:35534989-35535248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:241-494
               
               
               Cow position:chr18:52402804-52403069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:242-392
               
               
               Cow position:chr18:10668495-10668344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:242-399
               
               
               Cow position:chr18:47096582-47096433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr18:22045251-22045417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):80, 144

               
               
               Conread position:242-414
               
               
               Cow position:chr18:697059-697228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:242-442
               
               
               Cow position:chr18:42427776-42427580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):100, 44

               
               
               Conread position:242-467
               
               
               Cow position:chr18:52649179-52649410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:242-490
               
               
               Cow position:chr18:7945800-7945554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:242-494
               
               
               Cow position:chr18:8949639-8949891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):177, 20

               
               
               Conread position:242-494
               
               
               Cow position:chr18:10576263-10576005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):174, 76

               
               
               Conread position:242-494
               
               
               Cow position:chr18:33300045-33299804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):177, 22

               
               
               Conread position:243-442
               
               
               Cow position:chr18:46072631-46072423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:243-494
               
               
               Cow position:chr18:3193868-3193607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:244-411
               
               
               Cow position:chr18:26586454-26586622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:244-431
               
               
               Cow position:chr18:28322811-28322628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):175, 62

               
               
               Conread position:244-442
               
               
               Cow position:chr18:11672211-11672003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:245-406
               
               
               Cow position:chr18:4715454-4715611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:245-417
               
               
               Cow position:chr18:29188552-29188372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-493
               
               
               Cow position:chr18:1392412-1392661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):63, 202

               
               
               Conread position:246-392
               
               
               Cow position:chr18:19143814-19143961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 114

               
               
               Conread position:246-399
               
               
               Cow position:chr18:19296031-19295889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:246-490
               
               
               Cow position:chr18:51643213-51643461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:246-494
               
               
               Cow position:chr18:42290178-42290422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:247-407
               
               
               Cow position:chr18:41253698-41253536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr18:24022770-24022604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:247-442
               
               
               Cow position:chr18:19796762-19796963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:247-442
               
               
               Cow position:chr18:24266248-24266447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:247-442
               
               
               Cow position:chr18:40047349-40047538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):172, 66

               
               
               Conread position:247-494
               
               
               Cow position:chr18:49841438-49841181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:248-399
               
               
               Cow position:chr18:38228554-38228411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr18:48112812-48112978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:248-453
               
               
               Cow position:chr18:22516382-22516586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):168, 75

               
               
               Conread position:248-490
               
               
               Cow position:chr18:26999043-26998788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:249-410
               
               
               Cow position:chr18:306563-306726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr18:47306752-47306901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:250-442
               
               
               Cow position:chr18:47565967-47565787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:250-493
               
               
               Cow position:chr18:37381939-37382189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:250-494
               
               
               Cow position:chr18:11184091-11183848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):169, 63

               
               
               Conread position:251-407
               
               
               Cow position:chr18:47419946-47419795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:251-427
               
               
               Cow position:chr18:43125228-43125061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):168, 63

               
               
               Conread position:251-490
               
               
               Cow position:chr18:51594666-51594897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):164, 56

               
               
               Conread position:253-489
               
               
               Cow position:chr18:24759510-24759748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:254-392
               
               
               Cow position:chr18:31727497-31727633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:255-442
               
               
               Cow position:chr18:49655828-49655645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):118, 53

               
               
               Conread position:255-494
               
               
               Cow position:chr18:29356486-29356724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:256-417
               
               
               Cow position:chr18:23446913-23447075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:256-417
               
               
               Cow position:chr18:51691319-51691476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:258-398
               
               
               Cow position:chr18:21664577-21664706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:259-492
               
               
               Cow position:chr18:34834639-34834398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:259-494
               
               
               Cow position:chr18:2863854-2864092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):160, 50

               
               
               Conread position:262-494
               
               
               Cow position:chr18:54973872-54974091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):157, 7

               
               
               Conread position:265-494
               
               
               Cow position:chr18:55000600-55000841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:266-445
               
               
               Cow position:chr18:4804131-4804313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 51

               
               
               Conread position:266-459
               
               
               Cow position:chr18:19158013-19157817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:266-494
               
               
               Cow position:chr18:20175058-20175289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:268-435
               
               
               Cow position:chr18:47920883-47920714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:268-494
               
               
               Cow position:chr18:2774002-2774233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:269-494
               
               
               Cow position:chr18:8300158-8299918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:271-442
               
               
               Cow position:chr18:11754264-11754090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:272-414
               
               
               Cow position:chr18:82101-81961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:273-441
               
               
               Cow position:chr18:27109162-27109331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:274-397
               
               
               Cow position:chr18:43145585-43145706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr18:56157098-56157223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr18:53787196-53787054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:276-442
               
               
               Cow position:chr18:48962065-48961894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:280-494
               
               
               Cow position:chr18:49324314-49324521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:283-490
               
               
               Cow position:chr18:46647044-46647242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):156, 37

               
               
               Conread position:290-493
               
               
               Cow position:chr18:21740701-21740906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:295-442
               
               
               Cow position:chr18:21768721-21768579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:298-469
               
               
               Cow position:chr18:47705338-47705163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:298-494
               
               
               Cow position:chr18:48242297-48242092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 175

               
               
               Conread position:301-494
               
               
               Cow position:chr18:22214588-22214384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:302-492
               
               
               Cow position:chr18:25647146-25647347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:302-494
               
               
               Cow position:chr18:7077055-7076859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:302-494
               
               
               Cow position:chr18:46727689-46727490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:302-494
               
               
               Cow position:chr18:51392542-51392738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):105, 133

               
               
               Conread position:303-446
               
               
               Cow position:chr18:2765350-2765208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 98

               
               
               Conread position:304-494
               
               
               Cow position:chr18:36230628-36230822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:305-442
               
               
               Cow position:chr18:16997352-16997214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-486
               
               
               Cow position:chr18:9176997-9176811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):138, 112

               
               
               Conread position:305-494
               
               
               Cow position:chr18:4534925-4535113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 141

               
               
               Conread position:305-494
               
               
               Cow position:chr18:28923751-28923935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:305-494
               
               
               Cow position:chr18:36201534-36201725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:305-494
               
               
               Cow position:chr18:45637318-45637500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 78

               
               
               Conread position:308-494
               
               
               Cow position:chr18:4539787-4539976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:310-445
               
               
               Cow position:chr18:45985533-45985668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:311-441
               
               
               Cow position:chr18:47410635-47410504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:315-493
               
               
               Cow position:chr18:38687168-38686993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 95

               
               
               Conread position:318-494
               
               
               Cow position:chr18:50082172-50082349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:318-494
               
               
               Cow position:chr18:56184020-56183842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:319-490
               
               
               Cow position:chr18:5711569-5711743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 100

               
               
               Conread position:324-493
               
               
               Cow position:chr18:19620020-19619855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:324-494
               
               
               Cow position:chr18:17660481-17660655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:325-494
               
               
               Cow position:chr18:11685060-11684883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:327-493
               
               
               Cow position:chr18:44801813-44801986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:327-494
               
               
               Cow position:chr18:45571088-45570915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:329-494
               
               
               Cow position:chr18:29760101-29759929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:329-494
               
               
               Cow position:chr18:51190525-51190692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:145-414
               
               
               Cow position:chr19:20378758-20379021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:194-442
               
               
               Cow position:chr19:10538327-10538569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:199-494
               
               
               Cow position:chr19:24005877-24005589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:208-337
               
               
               Cow position:chr19:45466139-45466009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:208-442
               
               
               Cow position:chr19:37559992-37560211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:212-442
               
               
               Cow position:chr19:13840566-13840347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):204, 29

               
               
               Conread position:213-337
               
               
               Cow position:chr19:30534425-30534306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:214-492
               
               
               Cow position:chr19:56004054-56003777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):205, 98

               
               
               Conread position:214-493
               
               
               Cow position:chr19:16567370-16567078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:216-431
               
               
               Cow position:chr19:11816514-11816730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:216-494
               
               
               Cow position:chr19:11758422-11758679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:217-494
               
               
               Cow position:chr19:23832391-23832673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:218-494
               
               
               Cow position:chr19:50162196-50161914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:219-407
               
               
               Cow position:chr19:7794856-7794671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:219-414
               
               
               Cow position:chr19:17068279-17068098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):181, 49

               
               
               Conread position:220-382
               
               
               Cow position:chr19:25677776-25677935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:220-412
               
               
               Cow position:chr19:6855121-6854934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):110, 98

               
               
               Conread position:220-444
               
               
               Cow position:chr19:23831552-23831331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:222-392
               
               
               Cow position:chr19:56010315-56010143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:222-397
               
               
               Cow position:chr19:18153447-18153272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:222-411
               
               
               Cow position:chr19:41695471-41695647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:222-416
               
               
               Cow position:chr19:41188037-41187848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:222-442
               
               
               Cow position:chr19:35246147-35245924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:222-489
               
               
               Cow position:chr19:17664850-17664565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 92

               
               
               Conread position:222-494
               
               
               Cow position:chr19:18054058-18054321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):197, 22

               
               
               Conread position:222-494
               
               
               Cow position:chr19:20661210-20661487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:222-494
               
               
               Cow position:chr19:39584153-39583865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 142

               
               
               Conread position:223-397
               
               
               Cow position:chr19:49683663-49683837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:223-405
               
               
               Cow position:chr19:2358279-2358091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):89, 147

               
               
               Conread position:223-422
               
               
               Cow position:chr19:17964848-17964659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:223-442
               
               
               Cow position:chr19:5115690-5115897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:223-492
               
               
               Cow position:chr19:33575720-33575449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):192, 85

               
               
               Conread position:223-494
               
               
               Cow position:chr19:5185057-5185320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:223-494
               
               
               Cow position:chr19:10186708-10186425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 181

               
               
               Conread position:223-494
               
               
               Cow position:chr19:42767901-42768175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:224-341
               
               
               Cow position:chr19:4264031-4264145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:224-362
               
               
               Cow position:chr19:30148282-30148420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:224-378
               
               
               Cow position:chr19:21278665-21278517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:224-399
               
               
               Cow position:chr19:32938059-32937888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:224-406
               
               
               Cow position:chr19:14596896-14596708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:224-442
               
               
               Cow position:chr19:12279926-12279712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):195, 38

               
               
               Conread position:224-442
               
               
               Cow position:chr19:38732339-38732121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:224-494
               
               
               Cow position:chr19:22872749-22873029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:225-366
               
               
               Cow position:chr19:13439674-13439528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:225-376
               
               
               Cow position:chr19:16686783-16686935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 53

               
               
               Conread position:225-396
               
               
               Cow position:chr19:12497205-12497038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 134

               
               
               Conread position:225-413
               
               
               Cow position:chr19:49409502-49409681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:225-414
               
               
               Cow position:chr19:3857711-3857895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:225-417
               
               
               Cow position:chr19:41718763-41718956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):93, 113

               
               
               Conread position:225-442
               
               
               Cow position:chr19:17355058-17354840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:225-494
               
               
               Cow position:chr19:47453630-47453354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:226-388
               
               
               Cow position:chr19:53086810-53086645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:226-397
               
               
               Cow position:chr19:52381722-52381550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:226-418
               
               
               Cow position:chr19:23416680-23416875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:226-442
               
               
               Cow position:chr19:27965947-27966164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):83, 121

               
               
               Conread position:226-494
               
               
               Cow position:chr19:23786366-23786117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:227-315
               
               
               Cow position:chr19:21044575-21044487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-351
               
               
               Cow position:chr19:35152776-35152653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr19:50975620-50975775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:227-396
               
               
               Cow position:chr19:24068084-24068255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:227-399
               
               
               Cow position:chr19:30541369-30541538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:227-399
               
               
               Cow position:chr19:43058734-43058553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:227-403
               
               
               Cow position:chr19:12264153-12263983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:227-404
               
               
               Cow position:chr19:14252012-14252186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):143, 66

               
               
               Conread position:227-405
               
               
               Cow position:chr19:22414070-22414246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr19:12160345-12160513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:227-406
               
               
               Cow position:chr19:33610087-33609908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr19:43896498-43896326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr19:46822906-46822723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr19:7864252-7864068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr19:52621649-52621846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:227-415
               
               
               Cow position:chr19:30927996-30927807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:227-415
               
               
               Cow position:chr19:51307346-51307156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr19:9390945-9391143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 127

               
               
               Conread position:227-417
               
               
               Cow position:chr19:15987794-15987989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr19:39361350-39361154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):92, 144

               
               
               Conread position:227-417
               
               
               Cow position:chr19:41946918-41946724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr19:53371697-53371890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:227-418
               
               
               Cow position:chr19:33233780-33233590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:227-420
               
               
               Cow position:chr19:54004588-54004793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:227-424
               
               
               Cow position:chr19:1897763-1897952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):192, 57

               
               
               Conread position:227-425
               
               
               Cow position:chr19:1978372-1978180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):192, 75

               
               
               Conread position:227-430
               
               
               Cow position:chr19:23559582-23559379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:227-437
               
               
               Cow position:chr19:39587058-39587259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):192, 52

               
               
               Conread position:227-439
               
               
               Cow position:chr19:10574069-10574284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:227-439
               
               
               Cow position:chr19:36845442-36845235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:227-442
               
               
               Cow position:chr19:21176549-21176759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-442
               
               
               Cow position:chr19:23756554-23756760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:227-442
               
               
               Cow position:chr19:26167718-26167930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-442
               
               
               Cow position:chr19:41497442-41497662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:227-442
               
               
               Cow position:chr19:52185560-52185784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-443
               
               
               Cow position:chr19:39622588-39622807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-443
               
               
               Cow position:chr19:44572285-44572064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 181

               
               
               Conread position:227-444
               
               
               Cow position:chr19:55957370-55957588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 137

               
               
               Conread position:227-445
               
               
               Cow position:chr19:39981936-39981715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 145

               
               
               Conread position:227-456
               
               
               Cow position:chr19:26269029-26269269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:227-470
               
               
               Cow position:chr19:50562880-50562637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 187

               
               
               Conread position:227-472
               
               
               Cow position:chr19:387330-387090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:227-472
               
               
               Cow position:chr19:42695186-42694945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-480
               
               
               Cow position:chr19:52456557-52456823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:227-490
               
               
               Cow position:chr19:8869775-8869508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:227-490
               
               
               Cow position:chr19:30471160-30471424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:227-490
               
               
               Cow position:chr19:39758718-39758449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:227-490
               
               
               Cow position:chr19:40324019-40323758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-490
               
               
               Cow position:chr19:55247830-55247565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:227-491
               
               
               Cow position:chr19:22043161-22043424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-492
               
               
               Cow position:chr19:24062471-24062210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):192, 93

               
               
               Conread position:227-492
               
               
               Cow position:chr19:46094430-46094713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr19:254601-254875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:227-494
               
               
               Cow position:chr19:750387-750134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):192, 78

               
               
               Conread position:227-494
               
               
               Cow position:chr19:8864940-8864672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:227-494
               
               
               Cow position:chr19:10755498-10755233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 76

               
               
               Conread position:227-494
               
               
               Cow position:chr19:10970911-10971171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):149, 78

               
               
               Conread position:227-494
               
               
               Cow position:chr19:11194567-11194839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:227-494
               
               
               Cow position:chr19:12052650-12052923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):102, 159

               
               
               Conread position:227-494
               
               
               Cow position:chr19:12067941-12067668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):102, 159

               
               
               Conread position:227-494
               
               
               Cow position:chr19:12602001-12601736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr19:17796103-17795821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:227-494
               
               
               Cow position:chr19:22765809-22765545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-494
               
               
               Cow position:chr19:23889286-23889557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:227-494
               
               
               Cow position:chr19:26057354-26057629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):159, 63

               
               
               Conread position:227-494
               
               
               Cow position:chr19:33912429-33912702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:227-494
               
               
               Cow position:chr19:38411066-38410793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:227-494
               
               
               Cow position:chr19:38500357-38500088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:227-494
               
               
               Cow position:chr19:44838743-44838994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):189, 93

               
               
               Conread position:227-494
               
               
               Cow position:chr19:47859117-47859390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:228-355
               
               
               Cow position:chr19:41862925-41863053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:228-370
               
               
               Cow position:chr19:9835582-9835730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:228-374
               
               
               Cow position:chr19:15969870-15969722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:228-397
               
               
               Cow position:chr19:10172527-10172365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:228-408
               
               
               Cow position:chr19:15244260-15244094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:228-417
               
               
               Cow position:chr19:39698483-39698294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):113, 117

               
               
               Conread position:228-442
               
               
               Cow position:chr19:8128506-8128287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:228-444
               
               
               Cow position:chr19:2068460-2068247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:228-485
               
               
               Cow position:chr19:33988262-33987997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:228-494
               
               
               Cow position:chr19:24759690-24759960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:228-494
               
               
               Cow position:chr19:41946378-41946110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):191, 79

               
               
               Conread position:228-494
               
               
               Cow position:chr19:53542693-53542966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:228-494
               
               
               Cow position:chr19:56149867-56150144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:229-338
               
               
               Cow position:chr19:53479019-53478909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:229-376
               
               
               Cow position:chr19:8862514-8862651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:229-444
               
               
               Cow position:chr19:25570787-25570578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 88

               
               
               Conread position:229-494
               
               
               Cow position:chr19:3497752-3498029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:229-494
               
               
               Cow position:chr19:14631846-14632111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:230-313
               
               
               Cow position:chr19:25825907-25825824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-333
               
               
               Cow position:chr19:33206435-33206333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:230-349
               
               
               Cow position:chr19:6478106-6477984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:230-373
               
               
               Cow position:chr19:4328679-4328822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:230-382
               
               
               Cow position:chr19:10908819-10908670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-384
               
               
               Cow position:chr19:7594962-7595111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr19:31319352-31319201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr19:8603535-8603371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr19:43292527-43292369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:230-389
               
               
               Cow position:chr19:55385990-55385829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-390
               
               
               Cow position:chr19:22956839-22956674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:230-392
               
               
               Cow position:chr19:6914936-6914773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:230-397
               
               
               Cow position:chr19:54103096-54102928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:230-398
               
               
               Cow position:chr19:39378104-39378264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 43

               
               
               Conread position:230-398
               
               
               Cow position:chr19:51031387-51031556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:230-399
               
               
               Cow position:chr19:27968500-27968670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:141
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):88, 62

               
               
               Conread position:230-399
               
               
               Cow position:chr19:28918604-28918436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 84

               
               
               Conread position:230-399
               
               
               Cow position:chr19:30384903-30385067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr19:30917748-30917918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):82, 70

               
               
               Conread position:230-406
               
               
               Cow position:chr19:39585910-39586091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:230-409
               
               
               Cow position:chr19:14823446-14823272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:230-410
               
               
               Cow position:chr19:14588599-14588420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:230-410
               
               
               Cow position:chr19:33691333-33691146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:230-414
               
               
               Cow position:chr19:5261534-5261344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:230-415
               
               
               Cow position:chr19:12760906-12761093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr19:20700629-20700442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:230-416
               
               
               Cow position:chr19:26176011-26176199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 78

               
               
               Conread position:230-417
               
               
               Cow position:chr19:1355800-1355611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:230-417
               
               
               Cow position:chr19:2137634-2137817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr19:4297879-4297695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:230-417
               
               
               Cow position:chr19:12801351-12801539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 126

               
               
               Conread position:230-417
               
               
               Cow position:chr19:15075997-15076192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr19:23085052-23084863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr19:31729460-31729271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr19:39795383-39795198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr19:53189656-53189847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-418
               
               
               Cow position:chr19:12714296-12714107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:230-428
               
               
               Cow position:chr19:4586355-4586552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):127, 90

               
               
               Conread position:230-429
               
               
               Cow position:chr19:55438903-55438699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:230-430
               
               
               Cow position:chr19:2784373-2784577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:230-431
               
               
               Cow position:chr19:13996231-13996436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:230-431
               
               
               Cow position:chr19:37501851-37502040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-434
               
               
               Cow position:chr19:52356446-52356242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-440
               
               
               Cow position:chr19:37466867-37467077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 82

               
               
               Conread position:230-442
               
               
               Cow position:chr19:10985276-10985080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:230-442
               
               
               Cow position:chr19:38021637-38021426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:230-442
               
               
               Cow position:chr19:39254254-39254463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:230-442
               
               
               Cow position:chr19:52750565-52750776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):189, 41

               
               
               Conread position:230-443
               
               
               Cow position:chr19:432931-433148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:230-467
               
               
               Cow position:chr19:17297357-17297122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 83

               
               
               Conread position:230-483
               
               
               Cow position:chr19:44039-43783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 127

               
               
               Conread position:230-484
               
               
               Cow position:chr19:33637202-33636949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-485
               
               
               Cow position:chr19:13121092-13121344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):186, 84

               
               
               Conread position:230-488
               
               
               Cow position:chr19:52223576-52223310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 172

               
               
               Conread position:230-490
               
               
               Cow position:chr19:2220875-2221150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-492
               
               
               Cow position:chr19:51970062-51970319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):191, 84

               
               
               Conread position:230-493
               
               
               Cow position:chr19:6278382-6278108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr19:7637041-7637313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 93

               
               
               Conread position:230-493
               
               
               Cow position:chr19:7668892-7668624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:230-493
               
               
               Cow position:chr19:13267012-13267265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):186, 90

               
               
               Conread position:230-493
               
               
               Cow position:chr19:34166562-34166294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 51

               
               
               Conread position:230-493
               
               
               Cow position:chr19:55160984-55160716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr19:729554-729820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr19:2589709-2589433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr19:7158521-7158797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr19:8965465-8965186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 178

               
               
               Conread position:230-494
               
               
               Cow position:chr19:11559841-11560119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 248

               
               
               Conread position:230-494
               
               
               Cow position:chr19:15719434-15719694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:230-494
               
               
               Cow position:chr19:17776372-17776106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):189, 61

               
               
               Conread position:230-494
               
               
               Cow position:chr19:21836042-21836302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr19:23304295-23304566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):181, 191

               
               
               Conread position:230-494
               
               
               Cow position:chr19:27940573-27940299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr19:28447634-28447364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:230-494
               
               
               Cow position:chr19:28810122-28810385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):148, 74

               
               
               Conread position:230-494
               
               
               Cow position:chr19:33748046-33747770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:230-494
               
               
               Cow position:chr19:34420603-34420337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:230-494
               
               
               Cow position:chr19:35321943-35322212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):170, 49

               
               
               Conread position:230-494
               
               
               Cow position:chr19:40126971-40127242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 261

               
               
               Conread position:230-494
               
               
               Cow position:chr19:53776375-53776648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 120

               
               
               Conread position:230-496
               
               
               Cow position:chr19:55951970-55952232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:231-313
               
               
               Cow position:chr19:52480416-52480334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:74
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-385
               
               
               Cow position:chr19:54105650-54105493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:231-393
               
               
               Cow position:chr19:51185926-51185763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:231-397
               
               
               Cow position:chr19:12240299-12240136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:231-397
               
               
               Cow position:chr19:38948086-38948263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 157

               
               
               Conread position:231-399
               
               
               Cow position:chr19:10385373-10385540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:231-404
               
               
               Cow position:chr19:20694056-20693891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr19:12943813-12943652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr19:31768440-31768611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:231-406
               
               
               Cow position:chr19:46919325-46919143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:231-413
               
               
               Cow position:chr19:46180667-46180832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr19:7558739-7558554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-417
               
               
               Cow position:chr19:44757282-44757472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 177

               
               
               Conread position:231-422
               
               
               Cow position:chr19:10528091-10528282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 184

               
               
               Conread position:231-424
               
               
               Cow position:chr19:1553902-1553708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:231-427
               
               
               Cow position:chr19:52694498-52694309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:231-431
               
               
               Cow position:chr19:28137340-28137149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:231-439
               
               
               Cow position:chr19:38664121-38664335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 186

               
               
               Conread position:231-442
               
               
               Cow position:chr19:30007378-30007174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:231-442
               
               
               Cow position:chr19:34608004-34608215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):12, 171

               
               
               Conread position:231-442
               
               
               Cow position:chr19:52187677-52187469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr19:53378893-53378684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:231-443
               
               
               Cow position:chr19:7147863-7148082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:231-476
               
               
               Cow position:chr19:23088174-23087926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):188, 89

               
               
               Conread position:231-492
               
               
               Cow position:chr19:39576381-39576644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 80

               
               
               Conread position:231-494
               
               
               Cow position:chr19:16621165-16621428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr19:29368588-29368323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr19:29626093-29625828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr19:35107709-35107452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):188, 47

               
               
               Conread position:231-494
               
               
               Cow position:chr19:47671927-47671674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:231-496
               
               
               Cow position:chr19:49221429-49221690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 86

               
               
               Conread position:232-339
               
               
               Cow position:chr19:13729693-13729797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:232-339
               
               
               Cow position:chr19:27664600-27664492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:232-369
               
               
               Cow position:chr19:49959061-49958926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:232-373
               
               
               Cow position:chr19:6265658-6265524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:232-377
               
               
               Cow position:chr19:53690950-53691088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:232-385
               
               
               Cow position:chr19:31268805-31268662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:232-385
               
               
               Cow position:chr19:31269027-31268884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:232-392
               
               
               Cow position:chr19:49290266-49290424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr19:25572964-25572799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 35

               
               
               Conread position:232-399
               
               
               Cow position:chr19:20517616-20517462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:232-404
               
               
               Cow position:chr19:17260101-17259928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:232-412
               
               
               Cow position:chr19:36542687-36542863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr19:51750976-51751154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr19:24220314-24220492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr19:5406693-5406482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):135, 70

               
               
               Conread position:232-442
               
               
               Cow position:chr19:6344274-6344056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):71, 147

               
               
               Conread position:232-442
               
               
               Cow position:chr19:24956051-24956255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:232-468
               
               
               Cow position:chr19:15887124-15887367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):86, 60

               
               
               Conread position:232-469
               
               
               Cow position:chr19:32437712-32437946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):90, 68

               
               
               Conread position:232-490
               
               
               Cow position:chr19:10238928-10238664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):184, 79

               
               
               Conread position:232-492
               
               
               Cow position:chr19:18129752-18129479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 164

               
               
               Conread position:232-494
               
               
               Cow position:chr19:15853118-15852866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr19:17972077-17972336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):193, 15

               
               
               Conread position:232-494
               
               
               Cow position:chr19:23784232-23784492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr19:33903234-33903498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr19:36060146-36059855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:232-494
               
               
               Cow position:chr19:39648898-39649151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):187, 47

               
               
               Conread position:232-494
               
               
               Cow position:chr19:47772742-47772998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:232-494
               
               
               Cow position:chr19:48723225-48722954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:232-496
               
               
               Cow position:chr19:7053154-7053417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):187, 34

               
               
               Conread position:233-361
               
               
               Cow position:chr19:48729041-48729169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-385
               
               
               Cow position:chr19:39672810-39672963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 115

               
               
               Conread position:233-388
               
               
               Cow position:chr19:36191443-36191291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:233-392
               
               
               Cow position:chr19:6745574-6745407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):63, 136

               
               
               Conread position:233-394
               
               
               Cow position:chr19:19174706-19174549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:233-398
               
               
               Cow position:chr19:22167015-22167191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:233-399
               
               
               Cow position:chr19:4485957-4486124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:233-399
               
               
               Cow position:chr19:12686020-12685856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr19:24933340-24933497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr19:6417799-6417628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr19:2793468-2793644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr19:6093665-6093492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr19:14581549-14581371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:233-430
               
               
               Cow position:chr19:34654419-34654616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:233-442
               
               
               Cow position:chr19:54943158-54942951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:233-485
               
               
               Cow position:chr19:3811831-3812083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 78

               
               
               Conread position:233-494
               
               
               Cow position:chr19:11191430-11191692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:233-494
               
               
               Cow position:chr19:16096362-16096632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:233-494
               
               
               Cow position:chr19:39384856-39385114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):186, 39

               
               
               Conread position:233-494
               
               
               Cow position:chr19:52158733-52158459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:233-496
               
               
               Cow position:chr19:11376230-11376481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:233-496
               
               
               Cow position:chr19:55358231-55357978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):183, 86

               
               
               Conread position:234-315
               
               
               Cow position:chr19:14169251-14169332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:73
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-388
               
               
               Cow position:chr19:37109418-37109566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:234-390
               
               
               Cow position:chr19:12130802-12130959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr19:11211085-11211263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:234-416
               
               
               Cow position:chr19:18039264-18039445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:234-417
               
               
               Cow position:chr19:1614964-1614781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-438
               
               
               Cow position:chr19:25835147-25835341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):185, 65

               
               
               Conread position:234-442
               
               
               Cow position:chr19:1650696-1650491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):186, 86

               
               
               Conread position:234-442
               
               
               Cow position:chr19:4459252-4459458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):185, 83

               
               
               Conread position:234-442
               
               
               Cow position:chr19:12698507-12698302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:234-442
               
               
               Cow position:chr19:14253825-14253614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-444
               
               
               Cow position:chr19:42564336-42564125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:234-455
               
               
               Cow position:chr19:38717143-38717379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-467
               
               
               Cow position:chr19:56088260-56088476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):185, 34

               
               
               Conread position:234-484
               
               
               Cow position:chr19:28037728-28037973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):182, 9

               
               
               Conread position:234-490
               
               
               Cow position:chr19:3245865-3246119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:234-490
               
               
               Cow position:chr19:18504976-18505238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:234-494
               
               
               Cow position:chr19:268538-268278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):127, 65

               
               
               Conread position:234-494
               
               
               Cow position:chr19:2577750-2577488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):164, 198

               
               
               Conread position:234-494
               
               
               Cow position:chr19:3217193-3216941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):185, 20

               
               
               Conread position:234-494
               
               
               Cow position:chr19:5912767-5913032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr19:11110539-11110808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 167

               
               
               Conread position:234-494
               
               
               Cow position:chr19:24453320-24453585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:234-494
               
               
               Cow position:chr19:42904182-42903932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):185, 33

               
               
               Conread position:235-355
               
               
               Cow position:chr19:38637595-38637717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-380
               
               
               Cow position:chr19:25582491-25582350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-387
               
               
               Cow position:chr19:42217123-42217278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:235-390
               
               
               Cow position:chr19:19738192-19738035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:235-397
               
               
               Cow position:chr19:4602507-4602666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):95, 56

               
               
               Conread position:235-397
               
               
               Cow position:chr19:42544719-42544556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 90

               
               
               Conread position:235-406
               
               
               Cow position:chr19:1791505-1791677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 162

               
               
               Conread position:235-407
               
               
               Cow position:chr19:14421739-14421918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:235-411
               
               
               Cow position:chr19:41347557-41347389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr19:6020890-6021071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 128

               
               
               Conread position:235-414
               
               
               Cow position:chr19:55742093-55742273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:235-416
               
               
               Cow position:chr19:20547538-20547722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:235-417
               
               
               Cow position:chr19:36978460-36978275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:235-417
               
               
               Cow position:chr19:41089426-41089612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:235-423
               
               
               Cow position:chr19:34641453-34641253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:235-426
               
               
               Cow position:chr19:5521969-5522156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr19:10081277-10081057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr19:24693193-24692990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):184, 36

               
               
               Conread position:235-442
               
               
               Cow position:chr19:37067322-37067122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):184, 71

               
               
               Conread position:235-442
               
               
               Cow position:chr19:37406105-37405899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:235-442
               
               
               Cow position:chr19:43431133-43431345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):76, 130

               
               
               Conread position:235-442
               
               
               Cow position:chr19:55395096-55394883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:235-469
               
               
               Cow position:chr19:51620988-51621224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:235-490
               
               
               Cow position:chr19:25382493-25382758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr19:3870786-3870528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):184, 15

               
               
               Conread position:235-494
               
               
               Cow position:chr19:6309733-6309993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:235-494
               
               
               Cow position:chr19:12747588-12747851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr19:25673329-25673595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:235-494
               
               
               Cow position:chr19:26754227-26753961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:235-494
               
               
               Cow position:chr19:33033255-33033517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):181, 71

               
               
               Conread position:235-494
               
               
               Cow position:chr19:36097413-36097147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:235-494
               
               
               Cow position:chr19:47184891-47185158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:235-494
               
               
               Cow position:chr19:48960582-48960320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):184, 73

               
               
               Conread position:235-494
               
               
               Cow position:chr19:55583725-55583452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:235-496
               
               
               Cow position:chr19:13933634-13933360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:236-387
               
               
               Cow position:chr19:22199905-22199756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 131

               
               
               Conread position:236-408
               
               
               Cow position:chr19:11083011-11082842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:236-494
               
               
               Cow position:chr19:29627194-29627455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 215

               
               
               Conread position:236-494
               
               
               Cow position:chr19:30422902-30423184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:238-397
               
               
               Cow position:chr19:14928137-14928303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 61

               
               
               Conread position:238-399
               
               
               Cow position:chr19:51637231-51637066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:238-410
               
               
               Cow position:chr19:12202463-12202626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:238-411
               
               
               Cow position:chr19:38597253-38597084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr19:25927224-25927401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):159, 82

               
               
               Conread position:238-424
               
               
               Cow position:chr19:42515530-42515348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):181, 29

               
               
               Conread position:238-427
               
               
               Cow position:chr19:36139040-36138852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 76

               
               
               Conread position:238-442
               
               
               Cow position:chr19:6079164-6079376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:238-465
               
               
               Cow position:chr19:12115153-12114922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:238-490
               
               
               Cow position:chr19:43373234-43372972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:238-493
               
               
               Cow position:chr19:48744083-48744342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:238-494
               
               
               Cow position:chr19:15067823-15068080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:238-494
               
               
               Cow position:chr19:34288201-34287944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:239-417
               
               
               Cow position:chr19:35623578-35623402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):71, 138

               
               
               Conread position:239-442
               
               
               Cow position:chr19:20437453-20437248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 177

               
               
               Conread position:239-490
               
               
               Cow position:chr19:15091960-15092207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):177, 35

               
               
               Conread position:240-370
               
               
               Cow position:chr19:22838445-22838313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:240-386
               
               
               Cow position:chr19:41388944-41388801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr19:14545501-14545347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:240-397
               
               
               Cow position:chr19:51294101-51294258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:240-399
               
               
               Cow position:chr19:22836112-22836262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:240-399
               
               
               Cow position:chr19:35072867-35073027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr19:28699767-28699933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 83

               
               
               Conread position:240-411
               
               
               Cow position:chr19:25916090-25915927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-416
               
               
               Cow position:chr19:22871072-22871248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:240-416
               
               
               Cow position:chr19:27037748-27037918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:240-417
               
               
               Cow position:chr19:20622841-20622662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:240-417
               
               
               Cow position:chr19:31763680-31763499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:240-424
               
               
               Cow position:chr19:32505924-32506117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-425
               
               
               Cow position:chr19:12945120-12945304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:240-431
               
               
               Cow position:chr19:25726701-25726888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:240-442
               
               
               Cow position:chr19:8185389-8185185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr19:10930242-10930434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr19:35921035-35920834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:240-442
               
               
               Cow position:chr19:52728795-52728594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:240-445
               
               
               Cow position:chr19:25832016-25832220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:240-469
               
               
               Cow position:chr19:12103197-12103421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):117, 92

               
               
               Conread position:240-487
               
               
               Cow position:chr19:34757808-34758068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):67, 240

               
               
               Conread position:240-490
               
               
               Cow position:chr19:25041061-25041308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:240-490
               
               
               Cow position:chr19:30227706-30227449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:240-490
               
               
               Cow position:chr19:38111652-38111400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:240-493
               
               
               Cow position:chr19:43413963-43413703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 73

               
               
               Conread position:240-494
               
               
               Cow position:chr19:3621613-3621355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr19:10734978-10735228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:240-494
               
               
               Cow position:chr19:21199334-21199061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):78, 251

               
               
               Conread position:240-494
               
               
               Cow position:chr19:23378861-23378611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:240-494
               
               
               Cow position:chr19:24137449-24137186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr19:24145205-24144945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr19:24358076-24358311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr19:30232894-30232645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr19:38339791-38340055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:240-494
               
               
               Cow position:chr19:39664391-39664655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:240-494
               
               
               Cow position:chr19:39751655-39751403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):149, 74

               
               
               Conread position:240-496
               
               
               Cow position:chr19:11646748-11646494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 51

               
               
               Conread position:241-361
               
               
               Cow position:chr19:10177760-10177642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:241-375
               
               
               Cow position:chr19:37646578-37646708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:241-407
               
               
               Cow position:chr19:47727239-47727399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:241-422
               
               
               Cow position:chr19:42776617-42776435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:241-444
               
               
               Cow position:chr19:19804338-19804548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:241-472
               
               
               Cow position:chr19:39612988-39613216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:241-483
               
               
               Cow position:chr19:21224938-21224692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):74, 138

               
               
               Conread position:241-490
               
               
               Cow position:chr19:4987583-4987838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):178, 159

               
               
               Conread position:241-490
               
               
               Cow position:chr19:40051213-40051463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:241-494
               
               
               Cow position:chr19:13130047-13129797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):178, 48

               
               
               Conread position:241-494
               
               
               Cow position:chr19:41024404-41024147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):178, 79

               
               
               Conread position:241-494
               
               
               Cow position:chr19:46455024-46454770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:241-494
               
               
               Cow position:chr19:53623752-53623485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:241-495
               
               
               Cow position:chr19:43035426-43035166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 122

               
               
               Conread position:242-383
               
               
               Cow position:chr19:56331433-56331296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr19:10554122-10554280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr19:14613253-14613104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr19:17203540-17203372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:242-413
               
               
               Cow position:chr19:36177187-36177028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:242-413
               
               
               Cow position:chr19:53036702-53036864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:242-414
               
               
               Cow position:chr19:29139387-29139213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr19:25854697-25854874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:242-424
               
               
               Cow position:chr19:9572987-9573160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr19:32539497-32539688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):177, 26

               
               
               Conread position:242-492
               
               
               Cow position:chr19:26975889-26976135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:244-413
               
               
               Cow position:chr19:21790913-21790746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:244-442
               
               
               Cow position:chr19:6854106-6854297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:244-494
               
               
               Cow position:chr19:1968141-1968381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):158, 62

               
               
               Conread position:245-413
               
               
               Cow position:chr19:46160196-46160035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:245-417
               
               
               Cow position:chr19:1900547-1900721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:245-493
               
               
               Cow position:chr19:35870966-35870719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 57

               
               
               Conread position:245-494
               
               
               Cow position:chr19:6687818-6688073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:245-494
               
               
               Cow position:chr19:25526458-25526204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:245-494
               
               
               Cow position:chr19:28924939-28924683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:245-494
               
               
               Cow position:chr19:43190108-43189850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):84, 196

               
               
               Conread position:246-494
               
               
               Cow position:chr19:35762077-35762328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):166, 68

               
               
               Conread position:246-494
               
               
               Cow position:chr19:55590413-55590154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:247-389
               
               
               Cow position:chr19:33832106-33831960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:247-438
               
               
               Cow position:chr19:50850012-50849825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 69

               
               
               Conread position:247-490
               
               
               Cow position:chr19:20935930-20935682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:247-492
               
               
               Cow position:chr19:23394962-23394711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):172, 92

               
               
               Conread position:247-494
               
               
               Cow position:chr19:10213845-10213594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 61

               
               
               Conread position:248-360
               
               
               Cow position:chr19:2317826-2317714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-398
               
               
               Cow position:chr19:12469638-12469783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:248-399
               
               
               Cow position:chr19:24224510-24224365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr19:18984331-18984158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr19:18515863-18515693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:248-426
               
               
               Cow position:chr19:19916247-19916422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:248-442
               
               
               Cow position:chr19:2965727-2965524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 137

               
               
               Conread position:248-442
               
               
               Cow position:chr19:21817142-21816949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:248-442
               
               
               Cow position:chr19:26022284-26022480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:248-484
               
               
               Cow position:chr19:42517078-42517323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:248-492
               
               
               Cow position:chr19:21378290-21378545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr19:13488330-13488581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:248-494
               
               
               Cow position:chr19:14472602-14472852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:248-494
               
               
               Cow position:chr19:25410678-25410919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):163, 61

               
               
               Conread position:249-494
               
               
               Cow position:chr19:41585147-41584899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 204

               
               
               Conread position:249-494
               
               
               Cow position:chr19:55688519-55688777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:250-417
               
               
               Cow position:chr19:20543798-20543956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr19:35444330-35444499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr19:42868192-42868021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:250-491
               
               
               Cow position:chr19:33913704-33913451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:250-494
               
               
               Cow position:chr19:10929620-10929365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:250-494
               
               
               Cow position:chr19:25763279-25763037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):169, 22

               
               
               Conread position:250-494
               
               
               Cow position:chr19:31652735-31652485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:252-385
               
               
               Cow position:chr19:18050990-18051123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:252-414
               
               
               Cow position:chr19:39103841-39104001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:252-441
               
               
               Cow position:chr19:19460608-19460424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:253-414
               
               
               Cow position:chr19:26870029-26869874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:255-442
               
               
               Cow position:chr19:39057417-39057224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:256-464
               
               
               Cow position:chr19:7741433-7741646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:261-494
               
               
               Cow position:chr19:1664020-1664269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:261-494
               
               
               Cow position:chr19:54121428-54121201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):182, 54

               
               
               Conread position:263-492
               
               
               Cow position:chr19:27612017-27612247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:266-494
               
               
               Cow position:chr19:10545548-10545782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 51

               
               
               Conread position:267-404
               
               
               Cow position:chr19:10698553-10698418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:267-494
               
               
               Cow position:chr19:32457801-32457568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 90

               
               
               Conread position:268-490
               
               
               Cow position:chr19:44143783-44144003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:272-389
               
               
               Cow position:chr19:18034980-18035098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:273-399
               
               
               Cow position:chr19:43560746-43560619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:273-406
               
               
               Cow position:chr19:53925302-53925161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:274-411
               
               
               Cow position:chr19:16870620-16870761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:274-442
               
               
               Cow position:chr19:47987007-47986841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):145, 49

               
               
               Conread position:280-426
               
               
               Cow position:chr19:34819041-34819188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:281-468
               
               
               Cow position:chr19:15362554-15362742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:285-443
               
               
               Cow position:chr19:52568330-52568494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:285-494
               
               
               Cow position:chr19:16104944-16105158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:289-432
               
               
               Cow position:chr19:24637363-24637224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:299-496
               
               
               Cow position:chr19:8375177-8375383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 6

               
               
               Conread position:301-424
               
               
               Cow position:chr19:6508980-6509103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:301-494
               
               
               Cow position:chr19:8332423-8332219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:302-427
               
               
               Cow position:chr19:46300545-46300420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr19:35742279-35742085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:303-446
               
               
               Cow position:chr19:30241818-30241676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:303-494
               
               
               Cow position:chr19:4800865-4800667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr19:25035601-25035406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 156

               
               
               Conread position:303-494
               
               
               Cow position:chr19:33237296-33237101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr19:39485439-39485243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:304-442
               
               
               Cow position:chr19:39781641-39781502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:306-494
               
               
               Cow position:chr19:14593172-14592978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:307-461
               
               
               Cow position:chr19:24253179-24253339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:308-431
               
               
               Cow position:chr19:33931740-33931865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:308-494
               
               
               Cow position:chr19:22134035-22134220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):111, 92

               
               
               Conread position:309-494
               
               
               Cow position:chr19:9541787-9541969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:310-455
               
               
               Cow position:chr19:30552131-30551987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:310-494
               
               
               Cow position:chr19:18786209-18786399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:310-494
               
               
               Cow position:chr19:19919347-19919537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:312-494
               
               
               Cow position:chr19:34619916-34620106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 63

               
               
               Conread position:315-442
               
               
               Cow position:chr19:34459361-34459489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:323-494
               
               
               Cow position:chr19:20670804-20670971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:324-469
               
               
               Cow position:chr19:6154491-6154638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:324-494
               
               
               Cow position:chr19:5656023-5656191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:324-494
               
               
               Cow position:chr19:20984672-20984849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-496
               
               
               Cow position:chr19:4503321-4503142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:334-494
               
               
               Cow position:chr19:13757342-13757173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:203-494
               
               
               Cow position:chr2:77970837-77970553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:204-443
               
               
               Cow position:chr2:80848312-80848076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:205-385
               
               
               Cow position:chr2:23494030-23493852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:208-494
               
               
               Cow position:chr2:64323467-64323179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:214-493
               
               
               Cow position:chr2:19137669-19137956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 93

               
               
               Conread position:216-427
               
               
               Cow position:chr2:20919337-20919553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:217-417
               
               
               Cow position:chr2:26574976-26574780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:217-442
               
               
               Cow position:chr2:64773620-64773379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:217-494
               
               
               Cow position:chr2:1709185-1708908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):208, 24

               
               
               Conread position:218-382
               
               
               Cow position:chr2:77140365-77140525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:218-494
               
               
               Cow position:chr2:68239420-68239170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:218-494
               
               
               Cow position:chr2:71437159-71437443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:219-382
               
               
               Cow position:chr2:55112807-55112963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:219-417
               
               
               Cow position:chr2:5300815-5300616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:219-494
               
               
               Cow position:chr2:41382209-41381938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:220-387
               
               
               Cow position:chr2:82304163-82304001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:220-414
               
               
               Cow position:chr2:54931628-54931816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:220-454
               
               
               Cow position:chr2:1476626-1476390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:220-494
               
               
               Cow position:chr2:79744-80024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:220-494
               
               
               Cow position:chr2:44051525-44051246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:221-397
               
               
               Cow position:chr2:12952257-12952079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:221-465
               
               
               Cow position:chr2:56568387-56568633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:222-316
               
               
               Cow position:chr2:39263936-39263841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:222-397
               
               
               Cow position:chr2:22759760-22759938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 133

               
               
               Conread position:222-429
               
               
               Cow position:chr2:38683280-38683490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:222-430
               
               
               Cow position:chr2:47784814-47784613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr2:13580451-13580230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:222-442
               
               
               Cow position:chr2:15219323-15219107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:222-469
               
               
               Cow position:chr2:12682443-12682699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:222-469
               
               
               Cow position:chr2:37121469-37121233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 49

               
               
               Conread position:222-492
               
               
               Cow position:chr2:58687148-58686875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 230

               
               
               Conread position:222-494
               
               
               Cow position:chr2:44191711-44191414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:222-494
               
               
               Cow position:chr2:46262653-46262375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:223-372
               
               
               Cow position:chr2:67781298-67781144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:223-391
               
               
               Cow position:chr2:37920552-37920714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:223-392
               
               
               Cow position:chr2:73981842-73981677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:223-414
               
               
               Cow position:chr2:41651181-41651375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:223-417
               
               
               Cow position:chr2:69142718-69142533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):163, 96

               
               
               Conread position:223-417
               
               
               Cow position:chr2:76110603-76110416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:223-442
               
               
               Cow position:chr2:39229019-39228810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:223-442
               
               
               Cow position:chr2:44931045-44931266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:223-444
               
               
               Cow position:chr2:18615054-18615264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):196, 95

               
               
               Conread position:223-490
               
               
               Cow position:chr2:28726675-28726412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:223-490
               
               
               Cow position:chr2:36963736-36963464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:223-490
               
               
               Cow position:chr2:39663591-39663314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:223-494
               
               
               Cow position:chr2:45642280-45642554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):150, 45

               
               
               Conread position:223-494
               
               
               Cow position:chr2:53650228-53649958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 44

               
               
               Conread position:223-496
               
               
               Cow position:chr2:26438516-26438791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:224-399
               
               
               Cow position:chr2:39483698-39483521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:224-406
               
               
               Cow position:chr2:43139442-43139625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):5, 172

               
               
               Conread position:224-407
               
               
               Cow position:chr2:7909026-7908847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:224-442
               
               
               Cow position:chr2:40373193-40373404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:224-490
               
               
               Cow position:chr2:24594073-24593811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):185, 91

               
               
               Conread position:224-494
               
               
               Cow position:chr2:8843607-8843891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:224-494
               
               
               Cow position:chr2:15567993-15568247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):197, 93

               
               
               Conread position:224-496
               
               
               Cow position:chr2:26500727-26501002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):195, 94

               
               
               Conread position:225-350
               
               
               Cow position:chr2:82605254-82605130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:225-388
               
               
               Cow position:chr2:58070206-58070041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 138

               
               
               Conread position:225-389
               
               
               Cow position:chr2:27178858-27178692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:225-399
               
               
               Cow position:chr2:53567695-53567526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:225-399
               
               
               Cow position:chr2:64306977-64306814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:225-406
               
               
               Cow position:chr2:16481002-16481182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:225-407
               
               
               Cow position:chr2:16109535-16109709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:225-417
               
               
               Cow position:chr2:44063567-44063756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:225-417
               
               
               Cow position:chr2:67047631-67047439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:225-417
               
               
               Cow position:chr2:73924027-73923832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:225-425
               
               
               Cow position:chr2:39514249-39514049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:225-442
               
               
               Cow position:chr2:25922622-25922404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:225-492
               
               
               Cow position:chr2:69350357-69350630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 90

               
               
               Conread position:225-494
               
               
               Cow position:chr2:14634393-14634123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:225-494
               
               
               Cow position:chr2:60462619-60462884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 79

               
               
               Conread position:225-494
               
               
               Cow position:chr2:60467998-60468263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 79

               
               
               Conread position:225-494
               
               
               Cow position:chr2:68970958-68970675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 276

               
               
               Conread position:226-397
               
               
               Cow position:chr2:72126957-72126779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:226-462
               
               
               Cow position:chr2:46053683-46053444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:226-490
               
               
               Cow position:chr2:38362170-38362428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):193, 41

               
               
               Conread position:227-368
               
               
               Cow position:chr2:39456319-39456180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:227-376
               
               
               Cow position:chr2:33603593-33603447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr2:24271422-24271276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr2:43577570-43577720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr2:39187578-39187426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr2:46239985-46240131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr2:11617543-11617362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr2:50106319-50106152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 138

               
               
               Conread position:227-392
               
               
               Cow position:chr2:73650618-73650451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:227-396
               
               
               Cow position:chr2:58336014-58336181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr2:70771670-70771845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:227-399
               
               
               Cow position:chr2:78116151-78116325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:227-400
               
               
               Cow position:chr2:67745821-67745655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):126, 39

               
               
               Conread position:227-403
               
               
               Cow position:chr2:19842994-19842822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-403
               
               
               Cow position:chr2:52484756-52484928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):172, 43

               
               
               Conread position:227-406
               
               
               Cow position:chr2:38662487-38662666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:227-406
               
               
               Cow position:chr2:51825182-51824999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:227-407
               
               
               Cow position:chr2:75462531-75462358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:227-413
               
               
               Cow position:chr2:63568918-63568734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr2:15734628-15734439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:227-414
               
               
               Cow position:chr2:39642955-39642773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:227-414
               
               
               Cow position:chr2:42897877-42897688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr2:12186837-12186650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:227-417
               
               
               Cow position:chr2:21950180-21949995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:227-417
               
               
               Cow position:chr2:26361967-26361774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:227-417
               
               
               Cow position:chr2:26694819-26694627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):84, 132

               
               
               Conread position:227-417
               
               
               Cow position:chr2:42975489-42975666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr2:46110836-46111035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr2:57776561-57776365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:227-420
               
               
               Cow position:chr2:53653061-53652868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:227-424
               
               
               Cow position:chr2:75637522-75637724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:227-431
               
               
               Cow position:chr2:47879444-47879246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:227-438
               
               
               Cow position:chr2:81481054-81480848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-439
               
               
               Cow position:chr2:60910392-60910187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):189, 52

               
               
               Conread position:227-440
               
               
               Cow position:chr2:7453148-7453353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:227-440
               
               
               Cow position:chr2:50905493-50905714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr2:2827952-2827737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:227-442
               
               
               Cow position:chr2:16889848-16890059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:227-442
               
               
               Cow position:chr2:29394797-29395015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr2:52596527-52596731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:227-442
               
               
               Cow position:chr2:69109136-69109355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr2:72315603-72315818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-442
               
               
               Cow position:chr2:77941466-77941674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:227-450
               
               
               Cow position:chr2:16686746-16686532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):192, 71

               
               
               Conread position:227-456
               
               
               Cow position:chr2:29801936-29802158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):185, 43

               
               
               Conread position:227-458
               
               
               Cow position:chr2:32488462-32488687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:227-461
               
               
               Cow position:chr2:19320207-19319970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:227-468
               
               
               Cow position:chr2:7194417-7194172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:227-472
               
               
               Cow position:chr2:15674739-15674508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:227-478
               
               
               Cow position:chr2:39067704-39067455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):163, 89

               
               
               Conread position:227-485
               
               
               Cow position:chr2:2486053-2485788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 141

               
               
               Conread position:227-489
               
               
               Cow position:chr2:46052710-46052439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:227-490
               
               
               Cow position:chr2:16505258-16505535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:227-490
               
               
               Cow position:chr2:40257207-40257475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:227-490
               
               
               Cow position:chr2:79837514-79837776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:227-492
               
               
               Cow position:chr2:43624331-43624599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 89

               
               
               Conread position:227-493
               
               
               Cow position:chr2:42183574-42183306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):192, 72

               
               
               Conread position:227-494
               
               
               Cow position:chr2:1304159-1303885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 39

               
               
               Conread position:227-494
               
               
               Cow position:chr2:8821452-8821168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr2:17805559-17805829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:227-494
               
               
               Cow position:chr2:22042763-22042471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):95, 199

               
               
               Conread position:227-494
               
               
               Cow position:chr2:28301410-28301140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr2:28820580-28820299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr2:29160118-29159845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:227-494
               
               
               Cow position:chr2:44505781-44506059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr2:45498994-45499266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:227-494
               
               
               Cow position:chr2:46033543-46033268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:227-494
               
               
               Cow position:chr2:47403420-47403140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:227-494
               
               
               Cow position:chr2:70704462-70704191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr2:82580727-82580995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):186, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr2:86191291-86191559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 167

               
               
               Conread position:227-496
               
               
               Cow position:chr2:7573305-7573571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:227-496
               
               
               Cow position:chr2:9063476-9063206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):192, 90

               
               
               Conread position:228-381
               
               
               Cow position:chr2:80877841-80877674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:228-390
               
               
               Cow position:chr2:73544698-73544851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr2:70824030-70824194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:228-440
               
               
               Cow position:chr2:37619702-37619919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:228-441
               
               
               Cow position:chr2:41145527-41145310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:228-442
               
               
               Cow position:chr2:76762431-76762210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:228-466
               
               
               Cow position:chr2:12949956-12950194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:228-467
               
               
               Cow position:chr2:1335483-1335724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:228-468
               
               
               Cow position:chr2:34749784-34750013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):191, 32

               
               
               Conread position:228-480
               
               
               Cow position:chr2:71624190-71624438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):176, 113

               
               
               Conread position:228-492
               
               
               Cow position:chr2:46331274-46330998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:228-493
               
               
               Cow position:chr2:994164-994428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):191, 39

               
               
               Conread position:228-494
               
               
               Cow position:chr2:13684896-13684633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):161, 12

               
               
               Conread position:228-494
               
               
               Cow position:chr2:15250375-15250115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):191, 74

               
               
               Conread position:228-494
               
               
               Cow position:chr2:43444818-43444532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 259

               
               
               Conread position:229-364
               
               
               Cow position:chr2:55660930-55660799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:229-397
               
               
               Cow position:chr2:33560467-33560636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:229-397
               
               
               Cow position:chr2:47111834-47111670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:229-406
               
               
               Cow position:chr2:21380197-21380371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:229-406
               
               
               Cow position:chr2:40691739-40691558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:229-414
               
               
               Cow position:chr2:44103459-44103644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:229-417
               
               
               Cow position:chr2:39350282-39350469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:229-444
               
               
               Cow position:chr2:10628325-10628543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 135

               
               
               Conread position:229-460
               
               
               Cow position:chr2:45510343-45510584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 199

               
               
               Conread position:229-490
               
               
               Cow position:chr2:42801242-42800984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 91

               
               
               Conread position:229-493
               
               
               Cow position:chr2:65928635-65928901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:229-494
               
               
               Cow position:chr2:55632978-55632714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:229-496
               
               
               Cow position:chr2:19494421-19494145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:230-354
               
               
               Cow position:chr2:39864632-39864506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-361
               
               
               Cow position:chr2:22496108-22496232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr2:19530976-19530831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-381
               
               
               Cow position:chr2:50446188-50446035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-381
               
               
               Cow position:chr2:80237197-80237350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr2:47230592-47230446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-386
               
               
               Cow position:chr2:69828595-69828761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:230-390
               
               
               Cow position:chr2:84750913-84750756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-393
               
               
               Cow position:chr2:22371569-22371408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:230-397
               
               
               Cow position:chr2:3773120-3773287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:230-398
               
               
               Cow position:chr2:56771299-56771468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:230-399
               
               
               Cow position:chr2:44313510-44313681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr2:61681702-61681534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:230-399
               
               
               Cow position:chr2:65603433-65603598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):140, 84

               
               
               Conread position:230-399
               
               
               Cow position:chr2:74070533-74070370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:230-402
               
               
               Cow position:chr2:60181823-60181996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 163

               
               
               Conread position:230-404
               
               
               Cow position:chr2:13722089-13721926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:230-404
               
               
               Cow position:chr2:28873097-28872925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:230-405
               
               
               Cow position:chr2:17942806-17942989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:230-406
               
               
               Cow position:chr2:1888470-1888637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr2:39384464-39384630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:230-413
               
               
               Cow position:chr2:11435488-11435310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:230-413
               
               
               Cow position:chr2:19518946-19518777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr2:38619231-38619413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:230-414
               
               
               Cow position:chr2:46942148-46942329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:230-415
               
               
               Cow position:chr2:36124639-36124455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-416
               
               
               Cow position:chr2:21073918-21074106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr2:39371616-39371438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr2:7478727-7478921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:230-417
               
               
               Cow position:chr2:11000860-11001050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr2:13317790-13317602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:230-417
               
               
               Cow position:chr2:16594810-16594621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr2:29479874-29480063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr2:38234284-38234096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr2:42978771-42978960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:230-417
               
               
               Cow position:chr2:43131304-43131115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr2:61473880-61474079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr2:65587362-65587176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:230-417
               
               
               Cow position:chr2:73636964-73637152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:230-417
               
               
               Cow position:chr2:81984274-81984085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:230-417
               
               
               Cow position:chr2:86469798-86469609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-418
               
               
               Cow position:chr2:12866159-12866354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:230-420
               
               
               Cow position:chr2:29508076-29508268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:230-424
               
               
               Cow position:chr2:23301934-23301744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:230-424
               
               
               Cow position:chr2:39363215-39363014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:230-424
               
               
               Cow position:chr2:78379215-78379407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:230-424
               
               
               Cow position:chr2:81913205-81913013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:230-425
               
               
               Cow position:chr2:18243740-18243549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):189, 33

               
               
               Conread position:230-425
               
               
               Cow position:chr2:30954387-30954583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:230-425
               
               
               Cow position:chr2:46138289-46138491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:230-430
               
               
               Cow position:chr2:2437404-2437597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:230-430
               
               
               Cow position:chr2:23713080-23712879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:230-432
               
               
               Cow position:chr2:40484298-40484505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:230-438
               
               
               Cow position:chr2:15348602-15348391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:230-441
               
               
               Cow position:chr2:18233228-18233014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-441
               
               
               Cow position:chr2:41008088-41008297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):189, 170

               
               
               Conread position:230-442
               
               
               Cow position:chr2:3739636-3739851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:4921727-4921937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:230-442
               
               
               Cow position:chr2:8139125-8138915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:230-442
               
               
               Cow position:chr2:9543517-9543308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:14826485-14826270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:230-442
               
               
               Cow position:chr2:14848054-14847860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:16488193-16487981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:230-442
               
               
               Cow position:chr2:19211855-19212061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:230-442
               
               
               Cow position:chr2:32988776-32988559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:33471791-33471994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):169, 76

               
               
               Conread position:230-442
               
               
               Cow position:chr2:38837308-38837523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:39334452-39334667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:39566490-39566700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:230-442
               
               
               Cow position:chr2:44168271-44168062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:230-442
               
               
               Cow position:chr2:52345756-52345970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 76

               
               
               Conread position:230-442
               
               
               Cow position:chr2:61420952-61421174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr2:77211980-77212185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:230-444
               
               
               Cow position:chr2:30012555-30012771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:230-444
               
               
               Cow position:chr2:31355905-31355689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:230-451
               
               
               Cow position:chr2:9767225-9767445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 185

               
               
               Conread position:230-454
               
               
               Cow position:chr2:14709921-14710139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-464
               
               
               Cow position:chr2:41087900-41088125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:230-464
               
               
               Cow position:chr2:54883672-54883440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:230-466
               
               
               Cow position:chr2:32048685-32048447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:230-487
               
               
               Cow position:chr2:63050969-63051221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 191

               
               
               Conread position:230-489
               
               
               Cow position:chr2:66237405-66237140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):82, 218

               
               
               Conread position:230-490
               
               
               Cow position:chr2:6039221-6038948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-490
               
               
               Cow position:chr2:45597184-45596920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-490
               
               
               Cow position:chr2:46746140-46745862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-490
               
               
               Cow position:chr2:68292977-68292708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-491
               
               
               Cow position:chr2:19502267-19502542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 137

               
               
               Conread position:230-492
               
               
               Cow position:chr2:34695422-34695179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):227, 49

               
               
               Conread position:230-492
               
               
               Cow position:chr2:38646943-38647220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):92, 178

               
               
               Conread position:230-493
               
               
               Cow position:chr2:37791287-37791559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr2:44022597-44022871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:230-493
               
               
               Cow position:chr2:59396845-59397118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):82, 156

               
               
               Conread position:230-494
               
               
               Cow position:chr2:992358-992090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:230-494
               
               
               Cow position:chr2:6231682-6231955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:230-494
               
               
               Cow position:chr2:12686584-12686855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:230-494
               
               
               Cow position:chr2:13354886-13354612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:230-494
               
               
               Cow position:chr2:17841783-17842047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:230-494
               
               
               Cow position:chr2:21382643-21382917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):92, 181

               
               
               Conread position:230-494
               
               
               Cow position:chr2:26170953-26170682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:230-494
               
               
               Cow position:chr2:29122090-29121817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):74, 152

               
               
               Conread position:230-494
               
               
               Cow position:chr2:29735032-29734759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr2:30351498-30351770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr2:37009612-37009350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):100, 81

               
               
               Conread position:230-494
               
               
               Cow position:chr2:40597778-40597510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 202

               
               
               Conread position:230-494
               
               
               Cow position:chr2:46119562-46119824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:230-494
               
               
               Cow position:chr2:46120439-46120706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr2:46204721-46204453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr2:46227671-46227394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:230-494
               
               
               Cow position:chr2:46614607-46614339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):127, 19

               
               
               Conread position:230-494
               
               
               Cow position:chr2:47443477-47443196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:230-494
               
               
               Cow position:chr2:51855533-51855801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr2:60315146-60315408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):216, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr2:67927586-67927859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr2:72309791-72310069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr2:75600916-75600660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr2:80116303-80116034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 113

               
               
               Conread position:230-494
               
               
               Cow position:chr2:83211305-83211032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-496
               
               
               Cow position:chr2:1073727-1073463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:231-345
               
               
               Cow position:chr2:47453607-47453721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-347
               
               
               Cow position:chr2:75407430-75407315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:231-364
               
               
               Cow position:chr2:56021520-56021384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:231-369
               
               
               Cow position:chr2:30394079-30394223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-380
               
               
               Cow position:chr2:39274988-39274836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:231-382
               
               
               Cow position:chr2:69003249-69003103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:231-385
               
               
               Cow position:chr2:1205510-1205356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-386
               
               
               Cow position:chr2:31410569-31410418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-395
               
               
               Cow position:chr2:83273470-83273631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:231-410
               
               
               Cow position:chr2:51277756-51277929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):166, 36

               
               
               Conread position:231-411
               
               
               Cow position:chr2:2754806-2754988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:231-412
               
               
               Cow position:chr2:78256495-78256315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:231-412
               
               
               Cow position:chr2:85392038-85392214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:231-413
               
               
               Cow position:chr2:12889622-12889808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):67, 176

               
               
               Conread position:231-414
               
               
               Cow position:chr2:39068484-39068311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:231-414
               
               
               Cow position:chr2:69092950-69093126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:231-414
               
               
               Cow position:chr2:79663318-79663134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:231-417
               
               
               Cow position:chr2:51099769-51099955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:231-417
               
               
               Cow position:chr2:56837447-56837636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr2:70449226-70449046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:231-417
               
               
               Cow position:chr2:73359907-73360093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:231-425
               
               
               Cow position:chr2:30203019-30203210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:231-431
               
               
               Cow position:chr2:5604725-5604530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):188, 26

               
               
               Conread position:231-439
               
               
               Cow position:chr2:9476231-9476439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):169, 43

               
               
               Conread position:231-442
               
               
               Cow position:chr2:15298739-15298533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):188, 72

               
               
               Conread position:231-442
               
               
               Cow position:chr2:15597278-15597481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:231-442
               
               
               Cow position:chr2:16847389-16847178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 171

               
               
               Conread position:231-442
               
               
               Cow position:chr2:17940083-17940292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:231-442
               
               
               Cow position:chr2:46019411-46019630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:231-442
               
               
               Cow position:chr2:50913810-50914018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr2:69419385-69419591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):188, 42

               
               
               Conread position:231-442
               
               
               Cow position:chr2:80275088-80275299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):188, 182

               
               
               Conread position:231-446
               
               
               Cow position:chr2:46312640-46312430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):185, 39

               
               
               Conread position:231-457
               
               
               Cow position:chr2:46222804-46223017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):219, 84

               
               
               Conread position:231-466
               
               
               Cow position:chr2:8576204-8575969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):190, 83

               
               
               Conread position:231-467
               
               
               Cow position:chr2:76861246-76861485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):81, 218

               
               
               Conread position:231-469
               
               
               Cow position:chr2:14349983-14349736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:231-469
               
               
               Cow position:chr2:61815602-61815832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):212, 37

               
               
               Conread position:231-483
               
               
               Cow position:chr2:66479995-66480241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-489
               
               
               Cow position:chr2:44065769-44065519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):212, 85

               
               
               Conread position:231-489
               
               
               Cow position:chr2:45478397-45478652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-490
               
               
               Cow position:chr2:36077565-36077292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 121

               
               
               Conread position:231-490
               
               
               Cow position:chr2:59992044-59992301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-492
               
               
               Cow position:chr2:57733632-57733367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:231-493
               
               
               Cow position:chr2:45484757-45485029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:231-493
               
               
               Cow position:chr2:47753388-47753673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 148

               
               
               Conread position:231-493
               
               
               Cow position:chr2:67595812-67596085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:231-494
               
               
               Cow position:chr2:387571-387838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):166, 75

               
               
               Conread position:231-494
               
               
               Cow position:chr2:777479-777751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 63

               
               
               Conread position:231-494
               
               
               Cow position:chr2:13002001-13001738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 70

               
               
               Conread position:231-494
               
               
               Cow position:chr2:17328949-17328685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):188, 32

               
               
               Conread position:231-494
               
               
               Cow position:chr2:30642455-30642726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:231-494
               
               
               Cow position:chr2:31784131-31783873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 12

               
               
               Conread position:231-494
               
               
               Cow position:chr2:39590460-39590188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:231-494
               
               
               Cow position:chr2:46164297-46164553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr2:56350707-56350983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:231-494
               
               
               Cow position:chr2:60091231-60091492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 71

               
               
               Conread position:231-494
               
               
               Cow position:chr2:71621843-71622113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:231-496
               
               
               Cow position:chr2:76968959-76969243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 140

               
               
               Conread position:232-316
               
               
               Cow position:chr2:81758289-81758205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-338
               
               
               Cow position:chr2:65433771-65433667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr2:29806298-29806178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-358
               
               
               Cow position:chr2:33503329-33503457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:232-376
               
               
               Cow position:chr2:46245258-46245400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-388
               
               
               Cow position:chr2:47123351-47123510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:232-389
               
               
               Cow position:chr2:81893966-81894130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 121

               
               
               Conread position:232-393
               
               
               Cow position:chr2:16412411-16412568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr2:64465576-64465736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:232-398
               
               
               Cow position:chr2:46152641-46152816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr2:38913686-38913516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):150, 85

               
               
               Conread position:232-407
               
               
               Cow position:chr2:24669573-24669394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr2:47195170-47194991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr2:9062884-9062701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:232-414
               
               
               Cow position:chr2:38162596-38162776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:232-414
               
               
               Cow position:chr2:48784856-48785042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:232-417
               
               
               Cow position:chr2:47019047-47018865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:232-419
               
               
               Cow position:chr2:19025394-19025213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-423
               
               
               Cow position:chr2:6952669-6952481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):184, 55

               
               
               Conread position:232-428
               
               
               Cow position:chr2:10710106-10710305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:232-440
               
               
               Cow position:chr2:27337574-27337779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr2:27173557-27173363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-442
               
               
               Cow position:chr2:28330547-28330753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:232-442
               
               
               Cow position:chr2:41007339-41007547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):135, 41

               
               
               Conread position:232-442
               
               
               Cow position:chr2:46317076-46316866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:232-442
               
               
               Cow position:chr2:63331615-63331810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:232-442
               
               
               Cow position:chr2:70908129-70908331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-442
               
               
               Cow position:chr2:85460126-85459925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 35

               
               
               Conread position:232-444
               
               
               Cow position:chr2:33250884-33251097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 130

               
               
               Conread position:232-469
               
               
               Cow position:chr2:58074142-58074381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:232-490
               
               
               Cow position:chr2:46162156-46161894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 59

               
               
               Conread position:232-492
               
               
               Cow position:chr2:50449706-50449968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 88

               
               
               Conread position:232-494
               
               
               Cow position:chr2:827416-827678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr2:2673734-2673462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):183, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr2:7533577-7533833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr2:18997920-18997661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr2:24393488-24393755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 122

               
               
               Conread position:232-494
               
               
               Cow position:chr2:32115266-32115013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-494
               
               
               Cow position:chr2:41462220-41462491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:232-494
               
               
               Cow position:chr2:42255632-42255372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:232-494
               
               
               Cow position:chr2:43591170-43591421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):165, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr2:46188893-46189162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr2:54654410-54654680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:232-494
               
               
               Cow position:chr2:58153907-58153635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):168, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr2:74249019-74249287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-496
               
               
               Cow position:chr2:38965813-38965551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-496
               
               
               Cow position:chr2:63250209-63250465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:233-338
               
               
               Cow position:chr2:77040423-77040321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-382
               
               
               Cow position:chr2:47152342-47152496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 44

               
               
               Conread position:233-397
               
               
               Cow position:chr2:14218857-14218691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:233-407
               
               
               Cow position:chr2:37058966-37059139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:233-411
               
               
               Cow position:chr2:46015771-46015945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr2:1364394-1364576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:233-415
               
               
               Cow position:chr2:12139341-12139527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr2:6311453-6311279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr2:32840418-32840592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):153, 34

               
               
               Conread position:233-417
               
               
               Cow position:chr2:50354135-50353963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:233-424
               
               
               Cow position:chr2:56102130-56102319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:233-427
               
               
               Cow position:chr2:18621615-18621426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:233-428
               
               
               Cow position:chr2:37652456-37652256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:233-429
               
               
               Cow position:chr2:36117449-36117256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:233-431
               
               
               Cow position:chr2:13695035-13695236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 56

               
               
               Conread position:233-440
               
               
               Cow position:chr2:16428197-16428400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:233-441
               
               
               Cow position:chr2:43990973-43990767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:233-442
               
               
               Cow position:chr2:40728562-40728344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr2:60260783-60260998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 50

               
               
               Conread position:233-442
               
               
               Cow position:chr2:61561830-61562033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:233-469
               
               
               Cow position:chr2:65036091-65036312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:233-470
               
               
               Cow position:chr2:20947571-20947334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:233-488
               
               
               Cow position:chr2:62743807-62744067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):186, 84

               
               
               Conread position:233-492
               
               
               Cow position:chr2:43995133-43994870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):159, 34

               
               
               Conread position:233-492
               
               
               Cow position:chr2:61097099-61096840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):212, 75

               
               
               Conread position:233-494
               
               
               Cow position:chr2:6744001-6744251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:233-494
               
               
               Cow position:chr2:16839840-16839569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:233-494
               
               
               Cow position:chr2:17966839-17967093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):186, 46

               
               
               Conread position:233-494
               
               
               Cow position:chr2:41148076-41147803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr2:46057809-46058074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):170, 81

               
               
               Conread position:234-354
               
               
               Cow position:chr2:17805428-17805552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:234-354
               
               
               Cow position:chr2:65351399-65351510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-364
               
               
               Cow position:chr2:2098109-2098240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:234-378
               
               
               Cow position:chr2:45799725-45799871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:234-386
               
               
               Cow position:chr2:67621542-67621392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:234-388
               
               
               Cow position:chr2:1036185-1036340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-389
               
               
               Cow position:chr2:74012866-74013023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr2:79687338-79687486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr2:30127088-30127252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:234-399
               
               
               Cow position:chr2:39059280-39059121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:234-404
               
               
               Cow position:chr2:64562735-64562906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:234-410
               
               
               Cow position:chr2:45565903-45565731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:234-410
               
               
               Cow position:chr2:47784988-47784811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:234-411
               
               
               Cow position:chr2:34591157-34591326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr2:10842551-10842722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):164, 27

               
               
               Conread position:234-414
               
               
               Cow position:chr2:22370746-22370923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr2:485777-485596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr2:3931528-3931704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:234-417
               
               
               Cow position:chr2:26454449-26454634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr2:50013559-50013378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:234-417
               
               
               Cow position:chr2:55004485-55004307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:234-417
               
               
               Cow position:chr2:55662095-55662282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:234-417
               
               
               Cow position:chr2:66561836-66562021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-430
               
               
               Cow position:chr2:41422991-41422804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:234-440
               
               
               Cow position:chr2:42608267-42608062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):185, 85

               
               
               Conread position:234-440
               
               
               Cow position:chr2:71486977-71486774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:234-442
               
               
               Cow position:chr2:10505410-10505619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:234-442
               
               
               Cow position:chr2:24530565-24530362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 73

               
               
               Conread position:234-442
               
               
               Cow position:chr2:37097700-37097903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:234-442
               
               
               Cow position:chr2:46139528-46139313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr2:53500844-53501041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):182, 73

               
               
               Conread position:234-443
               
               
               Cow position:chr2:39095559-39095349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 110

               
               
               Conread position:234-454
               
               
               Cow position:chr2:44198082-44197855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-466
               
               
               Cow position:chr2:41019015-41019240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):177, 58

               
               
               Conread position:234-480
               
               
               Cow position:chr2:41915226-41915465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 79

               
               
               Conread position:234-484
               
               
               Cow position:chr2:59592565-59592808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 81

               
               
               Conread position:234-485
               
               
               Cow position:chr2:55496092-55496344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:234-489
               
               
               Cow position:chr2:66149517-66149271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):185, 49

               
               
               Conread position:234-490
               
               
               Cow position:chr2:16514057-16513800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:234-492
               
               
               Cow position:chr2:11599623-11599374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 74

               
               
               Conread position:234-492
               
               
               Cow position:chr2:13001117-13000859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 187

               
               
               Conread position:234-492
               
               
               Cow position:chr2:21003370-21003109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:234-492
               
               
               Cow position:chr2:47148096-47147844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):165, 25

               
               
               Conread position:234-494
               
               
               Cow position:chr2:16481656-16481925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr2:22677397-22677128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr2:54700659-54700388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:235-345
               
               
               Cow position:chr2:1358558-1358666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:235-373
               
               
               Cow position:chr2:72003748-72003889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 76

               
               
               Conread position:235-380
               
               
               Cow position:chr2:1777670-1777818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:235-380
               
               
               Cow position:chr2:21916532-21916679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:235-385
               
               
               Cow position:chr2:74198126-74198279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-390
               
               
               Cow position:chr2:13544189-13544041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 89

               
               
               Conread position:235-390
               
               
               Cow position:chr2:79245602-79245446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 48

               
               
               Conread position:235-392
               
               
               Cow position:chr2:16751675-16751834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:235-397
               
               
               Cow position:chr2:27599301-27599459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:235-397
               
               
               Cow position:chr2:84343947-84344111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:235-400
               
               
               Cow position:chr2:72359431-72359598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:235-405
               
               
               Cow position:chr2:66629400-66629220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:235-414
               
               
               Cow position:chr2:8083799-8083619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:235-414
               
               
               Cow position:chr2:9936454-9936633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:235-414
               
               
               Cow position:chr2:21171803-21171627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:235-416
               
               
               Cow position:chr2:26302476-26302665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:235-417
               
               
               Cow position:chr2:15400747-15400928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):121, 109

               
               
               Conread position:235-417
               
               
               Cow position:chr2:16668135-16667957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:235-417
               
               
               Cow position:chr2:35935090-35934900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:235-417
               
               
               Cow position:chr2:49467829-49467649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:235-423
               
               
               Cow position:chr2:2031808-2031996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 179

               
               
               Conread position:235-424
               
               
               Cow position:chr2:6304086-6304277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-425
               
               
               Cow position:chr2:3127872-3128064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 67

               
               
               Conread position:235-426
               
               
               Cow position:chr2:30384064-30384259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:235-438
               
               
               Cow position:chr2:14884441-14884239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:235-439
               
               
               Cow position:chr2:65554601-65554807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:235-440
               
               
               Cow position:chr2:38954034-38953819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 135

               
               
               Conread position:235-442
               
               
               Cow position:chr2:9725899-9726104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:235-442
               
               
               Cow position:chr2:50433056-50432846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):163, 88

               
               
               Conread position:235-442
               
               
               Cow position:chr2:53491260-53491457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:235-442
               
               
               Cow position:chr2:57802281-57802495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:235-442
               
               
               Cow position:chr2:80177397-80177593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):176, 81

               
               
               Conread position:235-443
               
               
               Cow position:chr2:14626805-14626585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:235-449
               
               
               Cow position:chr2:32431537-32431748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):184, 87

               
               
               Conread position:235-457
               
               
               Cow position:chr2:66959879-66959646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-469
               
               
               Cow position:chr2:11574014-11573766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-469
               
               
               Cow position:chr2:54052033-54052271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:235-472
               
               
               Cow position:chr2:80961761-80962006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):83, 219

               
               
               Conread position:235-479
               
               
               Cow position:chr2:50766671-50766430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:235-480
               
               
               Cow position:chr2:10574357-10574605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:235-490
               
               
               Cow position:chr2:29290117-29290368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:235-491
               
               
               Cow position:chr2:49428585-49428318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 131

               
               
               Conread position:235-493
               
               
               Cow position:chr2:37790913-37791189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:235-494
               
               
               Cow position:chr2:19058353-19058098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr2:19155985-19156247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 126

               
               
               Conread position:235-494
               
               
               Cow position:chr2:24218016-24218272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:235-494
               
               
               Cow position:chr2:31749766-31750030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr2:32264193-32264451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:235-494
               
               
               Cow position:chr2:32660382-32660112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 249

               
               
               Conread position:235-494
               
               
               Cow position:chr2:41452434-41452170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 80

               
               
               Conread position:235-494
               
               
               Cow position:chr2:45784950-45784671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:235-494
               
               
               Cow position:chr2:46242380-46242652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):91, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr2:67745450-67745190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:235-494
               
               
               Cow position:chr2:68328651-68328916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):172, 235

               
               
               Conread position:235-494
               
               
               Cow position:chr2:69199124-69199380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr2:82957882-82957616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:235-496
               
               
               Cow position:chr2:55526573-55526826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):232, 112

               
               
               Conread position:236-487
               
               
               Cow position:chr2:21410429-21410159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 246

               
               
               Conread position:236-494
               
               
               Cow position:chr2:41040507-41040775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):86, 185

               
               
               Conread position:236-494
               
               
               Cow position:chr2:41622684-41622417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:237-417
               
               
               Cow position:chr2:37224269-37224090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:237-434
               
               
               Cow position:chr2:11218001-11217794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:237-494
               
               
               Cow position:chr2:33988108-33988377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-350
               
               
               Cow position:chr2:31223505-31223617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 84

               
               
               Conread position:238-417
               
               
               Cow position:chr2:78669725-78669905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:238-437
               
               
               Cow position:chr2:64473158-64473352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:238-440
               
               
               Cow position:chr2:24722079-24722275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:238-440
               
               
               Cow position:chr2:35092509-35092697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr2:46014967-46014760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr2:13582788-13582518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:238-494
               
               
               Cow position:chr2:24007614-24007357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:238-494
               
               
               Cow position:chr2:45542205-45542458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 9

               
               
               Conread position:238-494
               
               
               Cow position:chr2:54790480-54790219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:239-382
               
               
               Cow position:chr2:62688336-62688193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:239-389
               
               
               Cow position:chr2:14313615-14313463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-390
               
               
               Cow position:chr2:28322667-28322825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:239-445
               
               
               Cow position:chr2:76562319-76562097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 133

               
               
               Conread position:240-345
               
               
               Cow position:chr2:23198-23301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr2:617812-617951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:240-382
               
               
               Cow position:chr2:67810844-67810987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:240-385
               
               
               Cow position:chr2:25284234-25284087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-388
               
               
               Cow position:chr2:75562203-75562056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:240-389
               
               
               Cow position:chr2:61975534-61975394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr2:51024009-51024153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr2:69779971-69780124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-392
               
               
               Cow position:chr2:40508398-40508552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:240-396
               
               
               Cow position:chr2:65342264-65342422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr2:59886891-59886735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr2:5479507-5479655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr2:36937693-36937543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr2:49345191-49345030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-399
               
               
               Cow position:chr2:74078920-74079074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:240-404
               
               
               Cow position:chr2:68998506-68998351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr2:5755106-5755265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 72

               
               
               Conread position:240-406
               
               
               Cow position:chr2:19191625-19191800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 125

               
               
               Conread position:240-407
               
               
               Cow position:chr2:70657391-70657218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:240-410
               
               
               Cow position:chr2:81294025-81293854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:240-414
               
               
               Cow position:chr2:42476038-42476207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:240-414
               
               
               Cow position:chr2:45138247-45138412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr2:45521836-45522012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:240-414
               
               
               Cow position:chr2:46378596-46378770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr2:55387764-55387596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:240-417
               
               
               Cow position:chr2:4207373-4207548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr2:13468412-13468235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:240-417
               
               
               Cow position:chr2:27128630-27128809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr2:37347980-37347805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:240-417
               
               
               Cow position:chr2:44215696-44215523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:240-426
               
               
               Cow position:chr2:37891287-37891481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr2:18589340-18589537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:240-442
               
               
               Cow position:chr2:21049139-21049333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-442
               
               
               Cow position:chr2:40703475-40703672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:240-442
               
               
               Cow position:chr2:69579480-69579685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-445
               
               
               Cow position:chr2:67302214-67302010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-467
               
               
               Cow position:chr2:85275303-85275526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):180, 50

               
               
               Conread position:240-486
               
               
               Cow position:chr2:15872125-15871881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):179, 24

               
               
               Conread position:240-487
               
               
               Cow position:chr2:22371759-22372008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 59

               
               
               Conread position:240-490
               
               
               Cow position:chr2:40410342-40410081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:240-492
               
               
               Cow position:chr2:46129970-46130211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):195, 27

               
               
               Conread position:240-493
               
               
               Cow position:chr2:276862-276617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):160, 39

               
               
               Conread position:240-493
               
               
               Cow position:chr2:75227400-75227133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:240-494
               
               
               Cow position:chr2:972013-971762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):179, 7

               
               
               Conread position:240-494
               
               
               Cow position:chr2:13369853-13369592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):77, 183

               
               
               Conread position:240-494
               
               
               Cow position:chr2:13672711-13672460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr2:17114546-17114796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr2:24596654-24596388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:240-494
               
               
               Cow position:chr2:38658601-38658846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:240-494
               
               
               Cow position:chr2:40488998-40488746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr2:45574813-45575060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):103, 61

               
               
               Conread position:240-494
               
               
               Cow position:chr2:46351587-46351835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):179, 62

               
               
               Conread position:240-494
               
               
               Cow position:chr2:73094609-73094854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr2:78249935-78249673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 198

               
               
               Conread position:240-494
               
               
               Cow position:chr2:84480304-84480567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr2:85794773-85795024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:240-496
               
               
               Cow position:chr2:29343208-29343477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:240-496
               
               
               Cow position:chr2:41248761-41248501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-496
               
               
               Cow position:chr2:46136976-46137225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:241-354
               
               
               Cow position:chr2:46315578-46315689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-382
               
               
               Cow position:chr2:3728218-3728081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):100, 60

               
               
               Conread position:241-384
               
               
               Cow position:chr2:66027754-66027609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:241-389
               
               
               Cow position:chr2:77361297-77361154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:241-394
               
               
               Cow position:chr2:45895459-45895318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-396
               
               
               Cow position:chr2:38700185-38700341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:241-399
               
               
               Cow position:chr2:38884230-38884385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:241-399
               
               
               Cow position:chr2:69250472-69250631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 62

               
               
               Conread position:241-400
               
               
               Cow position:chr2:82374630-82374473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:241-411
               
               
               Cow position:chr2:9416608-9416768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr2:21327404-21327238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:241-417
               
               
               Cow position:chr2:19017649-19017471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:241-417
               
               
               Cow position:chr2:65059238-65059058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:241-440
               
               
               Cow position:chr2:37615139-37614937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:241-442
               
               
               Cow position:chr2:24635066-24634874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:241-442
               
               
               Cow position:chr2:58135194-58135398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr2:76313671-76313874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:241-468
               
               
               Cow position:chr2:44620783-44620556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:241-487
               
               
               Cow position:chr2:65830143-65830391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):178, 72

               
               
               Conread position:241-490
               
               
               Cow position:chr2:82116281-82116029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):174, 73

               
               
               Conread position:241-492
               
               
               Cow position:chr2:86490450-86490697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:241-493
               
               
               Cow position:chr2:46968003-46968254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:241-494
               
               
               Cow position:chr2:6160155-6160400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 60

               
               
               Conread position:241-494
               
               
               Cow position:chr2:11657084-11656828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 73

               
               
               Conread position:241-494
               
               
               Cow position:chr2:33553982-33554236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):178, 66

               
               
               Conread position:241-494
               
               
               Cow position:chr2:44007622-44007354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:241-494
               
               
               Cow position:chr2:46342955-46343206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 60

               
               
               Conread position:241-496
               
               
               Cow position:chr2:1422547-1422291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):8, 162

               
               
               Conread position:242-399
               
               
               Cow position:chr2:12816829-12816668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-399
               
               
               Cow position:chr2:47165636-47165792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 137

               
               
               Conread position:242-404
               
               
               Cow position:chr2:51624466-51624636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:242-408
               
               
               Cow position:chr2:65988286-65988127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr2:12873601-12873431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:242-427
               
               
               Cow position:chr2:19164775-19164958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:242-439
               
               
               Cow position:chr2:49862850-49862651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 110

               
               
               Conread position:242-442
               
               
               Cow position:chr2:49716892-49717094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:242-469
               
               
               Cow position:chr2:38640512-38640286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):173, 73

               
               
               Conread position:242-472
               
               
               Cow position:chr2:56937870-56937648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:242-485
               
               
               Cow position:chr2:10743381-10743607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:242-494
               
               
               Cow position:chr2:31529678-31529440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:242-494
               
               
               Cow position:chr2:46202461-46202207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:243-376
               
               
               Cow position:chr2:11806760-11806630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-387
               
               
               Cow position:chr2:31387170-31387313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:243-442
               
               
               Cow position:chr2:70847070-70847268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:244-371
               
               
               Cow position:chr2:19598230-19598098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:244-494
               
               
               Cow position:chr2:39334682-39334929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 76

               
               
               Conread position:244-494
               
               
               Cow position:chr2:44170749-44170494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:245-392
               
               
               Cow position:chr2:55278394-55278546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:245-414
               
               
               Cow position:chr2:1923691-1923862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:245-417
               
               
               Cow position:chr2:81244105-81243931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:245-442
               
               
               Cow position:chr2:46125948-46126141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:245-442
               
               
               Cow position:chr2:72528153-72527954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:245-485
               
               
               Cow position:chr2:1317691-1317940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:245-494
               
               
               Cow position:chr2:39815105-39815348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 62

               
               
               Conread position:245-494
               
               
               Cow position:chr2:47065303-47065046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:246-494
               
               
               Cow position:chr2:55872329-55872583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:247-417
               
               
               Cow position:chr2:25283302-25283135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-426
               
               
               Cow position:chr2:17492330-17492508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):172, 59

               
               
               Conread position:247-442
               
               
               Cow position:chr2:54968198-54968002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):67, 78

               
               
               Conread position:247-490
               
               
               Cow position:chr2:42970295-42970049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):172, 67

               
               
               Conread position:247-494
               
               
               Cow position:chr2:45619208-45619463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:247-496
               
               
               Cow position:chr2:77467270-77467514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):172, 23

               
               
               Conread position:248-391
               
               
               Cow position:chr2:86540966-86541111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 142

               
               
               Conread position:248-392
               
               
               Cow position:chr2:41459285-41459137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr2:47160136-47159970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:248-417
               
               
               Cow position:chr2:21023320-21023491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:248-441
               
               
               Cow position:chr2:16669658-16669463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:248-442
               
               
               Cow position:chr2:39750304-39750109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):74, 135

               
               
               Conread position:248-442
               
               
               Cow position:chr2:46230135-46230330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:248-442
               
               
               Cow position:chr2:78360598-78360403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:248-443
               
               
               Cow position:chr2:59819624-59819814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):167, 50

               
               
               Conread position:248-444
               
               
               Cow position:chr2:38795584-38795770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:248-467
               
               
               Cow position:chr2:37973136-37973361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:248-476
               
               
               Cow position:chr2:38651694-38651473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):171, 75

               
               
               Conread position:248-480
               
               
               Cow position:chr2:35988430-35988667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:248-494
               
               
               Cow position:chr2:64212365-64212622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:248-494
               
               
               Cow position:chr2:65932156-65931900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:248-496
               
               
               Cow position:chr2:57939874-57939614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 242

               
               
               Conread position:249-371
               
               
               Cow position:chr2:45491028-45491148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:249-431
               
               
               Cow position:chr2:1141663-1141488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):173, 55

               
               
               Conread position:249-439
               
               
               Cow position:chr2:67386284-67386476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:249-442
               
               
               Cow position:chr2:2094802-2094606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:249-462
               
               
               Cow position:chr2:77157160-77157369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:249-485
               
               
               Cow position:chr2:43835373-43835616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 74

               
               
               Conread position:249-494
               
               
               Cow position:chr2:10440015-10439772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):170, 14

               
               
               Conread position:250-413
               
               
               Cow position:chr2:13328821-13328980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:250-426
               
               
               Cow position:chr2:56338850-56339021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:250-442
               
               
               Cow position:chr2:63074678-63074858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):169, 52

               
               
               Conread position:250-480
               
               
               Cow position:chr2:35948495-35948733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):169, 65

               
               
               Conread position:250-480
               
               
               Cow position:chr2:44986140-44986374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:250-487
               
               
               Cow position:chr2:20931180-20930962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):201, 17

               
               
               Conread position:252-444
               
               
               Cow position:chr2:61480775-61480580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:252-494
               
               
               Cow position:chr2:47047570-47047816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:253-414
               
               
               Cow position:chr2:81232924-81233089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:253-442
               
               
               Cow position:chr2:50353071-50352887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):166, 38

               
               
               Conread position:255-406
               
               
               Cow position:chr2:52466268-52466421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:256-417
               
               
               Cow position:chr2:47189694-47189532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:256-492
               
               
               Cow position:chr2:56828381-56828630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:259-444
               
               
               Cow position:chr2:50566114-50565926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:260-421
               
               
               Cow position:chr2:81493424-81493585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):152, 64

               
               
               Conread position:261-494
               
               
               Cow position:chr2:45535640-45535400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:263-394
               
               
               Cow position:chr2:86061975-86061847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:263-417
               
               
               Cow position:chr2:80235178-80235335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:264-494
               
               
               Cow position:chr2:39513644-39513402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:265-493
               
               
               Cow position:chr2:15329544-15329328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:266-398
               
               
               Cow position:chr2:48199265-48199395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:266-490
               
               
               Cow position:chr2:41711034-41710802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:268-494
               
               
               Cow position:chr2:62200927-62200691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:269-494
               
               
               Cow position:chr2:23120603-23120832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:270-488
               
               
               Cow position:chr2:46357998-46357776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:270-494
               
               
               Cow position:chr2:43790266-43790035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):149, 58

               
               
               Conread position:271-422
               
               
               Cow position:chr2:39501201-39501055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:271-426
               
               
               Cow position:chr2:35208074-35207924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:272-492
               
               
               Cow position:chr2:54971340-54971112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):144, 48

               
               
               Conread position:272-494
               
               
               Cow position:chr2:1762955-1762730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):147, 45

               
               
               Conread position:273-406
               
               
               Cow position:chr2:16409636-16409503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr2:49931992-49931867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-417
               
               
               Cow position:chr2:45907714-45907570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:274-442
               
               
               Cow position:chr2:11631688-11631520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:274-443
               
               
               Cow position:chr2:26805948-26806120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 140

               
               
               Conread position:274-488
               
               
               Cow position:chr2:37113035-37113248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:279-442
               
               
               Cow position:chr2:68870849-68870688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 130

               
               
               Conread position:280-494
               
               
               Cow position:chr2:44081595-44081371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:281-390
               
               
               Cow position:chr2:72612593-72612484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:283-413
               
               
               Cow position:chr2:46143279-46143153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:283-432
               
               
               Cow position:chr2:46346673-46346827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:283-442
               
               
               Cow position:chr2:82138963-82139121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:283-494
               
               
               Cow position:chr2:4016698-4016903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):160, 37

               
               
               Conread position:285-414
               
               
               Cow position:chr2:46300767-46300634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:286-494
               
               
               Cow position:chr2:29860151-29859946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):141, 33

               
               
               Conread position:287-494
               
               
               Cow position:chr2:19286936-19287146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:292-494
               
               
               Cow position:chr2:39584589-39584389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:294-494
               
               
               Cow position:chr2:69823734-69823524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:295-494
               
               
               Cow position:chr2:47015196-47015399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:295-494
               
               
               Cow position:chr2:68487864-68488069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 183

               
               
               Conread position:296-443
               
               
               Cow position:chr2:40058599-40058746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:296-494
               
               
               Cow position:chr2:47893771-47893982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:299-442
               
               
               Cow position:chr2:47624269-47624412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 102

               
               
               Conread position:301-442
               
               
               Cow position:chr2:66094857-66095000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-461
               
               
               Cow position:chr2:23981719-23981557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:302-431
               
               
               Cow position:chr2:44032267-44032394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:302-469
               
               
               Cow position:chr2:45721132-45721303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr2:1638739-1638538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:302-494
               
               
               Cow position:chr2:24434145-24434346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr2:39798377-39798175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr2:44025510-44025311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:302-494
               
               
               Cow position:chr2:47073321-47073130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:302-494
               
               
               Cow position:chr2:47645181-47644989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:302-496
               
               
               Cow position:chr2:40402892-40403096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:303-492
               
               
               Cow position:chr2:44222956-44222760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:303-494
               
               
               Cow position:chr2:59952725-59952917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 173

               
               
               Conread position:303-496
               
               
               Cow position:chr2:69747482-69747685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:304-490
               
               
               Cow position:chr2:52409165-52409359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:304-494
               
               
               Cow position:chr2:30911454-30911255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:305-435
               
               
               Cow position:chr2:38949989-38950118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 114

               
               
               Conread position:305-494
               
               
               Cow position:chr2:47115789-47115983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:305-494
               
               
               Cow position:chr2:74260588-74260392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:307-488
               
               
               Cow position:chr2:83184282-83184093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:307-493
               
               
               Cow position:chr2:41955015-41954821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 50

               
               
               Conread position:307-494
               
               
               Cow position:chr2:48863861-48864051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:308-488
               
               
               Cow position:chr2:44217781-44217967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:308-492
               
               
               Cow position:chr2:72183362-72183557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:308-494
               
               
               Cow position:chr2:40880197-40880006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:308-494
               
               
               Cow position:chr2:42927322-42927511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:308-494
               
               
               Cow position:chr2:54810725-54810918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:310-494
               
               
               Cow position:chr2:25597370-25597559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:310-494
               
               
               Cow position:chr2:53851563-53851372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:314-494
               
               
               Cow position:chr2:39564476-39564290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 67

               
               
               Conread position:315-492
               
               
               Cow position:chr2:46247339-46247521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 154

               
               
               Conread position:315-494
               
               
               Cow position:chr2:40466757-40466570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:317-494
               
               
               Cow position:chr2:58035227-58035040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:320-494
               
               
               Cow position:chr2:38747773-38747595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:324-442
               
               
               Cow position:chr2:16018119-16018238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-490
               
               
               Cow position:chr2:26102880-26102713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:324-493
               
               
               Cow position:chr2:54789887-54789709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 107

               
               
               Conread position:324-494
               
               
               Cow position:chr2:549217-549392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:324-494
               
               
               Cow position:chr2:15694318-15694147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 62

               
               
               Conread position:324-494
               
               
               Cow position:chr2:59427562-59427383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr2:80963537-80963710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 84

               
               
               Conread position:325-494
               
               
               Cow position:chr2:9173161-9173337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:327-492
               
               
               Cow position:chr2:48361682-48361509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:329-492
               
               
               Cow position:chr2:22254070-22254240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:329-494
               
               
               Cow position:chr2:53532704-53532878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:329-496
               
               
               Cow position:chr2:14089901-14089726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:331-494
               
               
               Cow position:chr2:15391884-15391724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:332-492
               
               
               Cow position:chr2:45912527-45912696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:343-494
               
               
               Cow position:chr2:52344845-52344691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:127-433
               
               
               Cow position:chr20:19201880-19201576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 10

               
               
               Conread position:161-494
               
               
               Cow position:chr20:5814884-5814547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:205-399
               
               
               Cow position:chr20:21279654-21279466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:212-417
               
               
               Cow position:chr20:22851743-22851540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 148

               
               
               Conread position:212-494
               
               
               Cow position:chr20:13034067-13034345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):154, 102

               
               
               Conread position:214-351
               
               
               Cow position:chr20:2069868-2070004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:214-417
               
               
               Cow position:chr20:7155439-7155243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:215-414
               
               
               Cow position:chr20:42309705-42309899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:217-389
               
               
               Cow position:chr20:26424669-26424496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 145

               
               
               Conread position:218-494
               
               
               Cow position:chr20:3599141-3599416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:219-397
               
               
               Cow position:chr20:23428290-23428460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:220-397
               
               
               Cow position:chr20:38061515-38061684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:220-414
               
               
               Cow position:chr20:5991596-5991416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:220-490
               
               
               Cow position:chr20:20984254-20983979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:221-413
               
               
               Cow position:chr20:3035597-3035399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:221-413
               
               
               Cow position:chr20:6473992-6473799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:221-414
               
               
               Cow position:chr20:36023143-36023335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:221-417
               
               
               Cow position:chr20:19746227-19746033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:222-424
               
               
               Cow position:chr20:9379739-9379546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr20:20158386-20158172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):197, 19

               
               
               Conread position:222-442
               
               
               Cow position:chr20:32583576-32583353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:223-382
               
               
               Cow position:chr20:21169513-21169665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:223-417
               
               
               Cow position:chr20:33076567-33076761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:223-487
               
               
               Cow position:chr20:22235553-22235294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):161, 18

               
               
               Conread position:223-494
               
               
               Cow position:chr20:14759419-14759682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):196, 90

               
               
               Conread position:224-383
               
               
               Cow position:chr20:42897719-42897881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:224-411
               
               
               Cow position:chr20:16977583-16977776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-442
               
               
               Cow position:chr20:11101656-11101450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):195, 76

               
               
               Conread position:224-442
               
               
               Cow position:chr20:40303629-40303847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:225-333
               
               
               Cow position:chr20:36313359-36313251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:225-389
               
               
               Cow position:chr20:18500783-18500617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:225-411
               
               
               Cow position:chr20:2798741-2798923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:225-411
               
               
               Cow position:chr20:28249435-28249248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:225-423
               
               
               Cow position:chr20:14433167-14433364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):93, 109

               
               
               Conread position:225-442
               
               
               Cow position:chr20:1139507-1139731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:225-494
               
               
               Cow position:chr20:11188570-11188820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):210, 38

               
               
               Conread position:226-494
               
               
               Cow position:chr20:7441890-7442149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):193, 38

               
               
               Conread position:227-361
               
               
               Cow position:chr20:28818685-28818817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-378
               
               
               Cow position:chr20:11368113-11368261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr20:19622995-19623139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:227-383
               
               
               Cow position:chr20:37166195-37166047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-385
               
               
               Cow position:chr20:35605454-35605301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr20:17733302-17733470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:227-391
               
               
               Cow position:chr20:21941677-21941522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr20:38934817-38934987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr20:37358110-37357921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr20:25464795-25464983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:227-417
               
               
               Cow position:chr20:28935391-28935577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 132

               
               
               Conread position:227-417
               
               
               Cow position:chr20:30755534-30755342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:227-431
               
               
               Cow position:chr20:19834581-19834783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):192, 17

               
               
               Conread position:227-431
               
               
               Cow position:chr20:20590054-20590254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):192, 25

               
               
               Conread position:227-442
               
               
               Cow position:chr20:21325575-21325362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-468
               
               
               Cow position:chr20:38925596-38925839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 111

               
               
               Conread position:227-485
               
               
               Cow position:chr20:13269865-13269609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:227-489
               
               
               Cow position:chr20:38551629-38551357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:227-490
               
               
               Cow position:chr20:23286080-23286349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:227-493
               
               
               Cow position:chr20:8702679-8702938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):208, 76

               
               
               Conread position:227-494
               
               
               Cow position:chr20:7756385-7756646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:227-494
               
               
               Cow position:chr20:9376713-9376447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):192, 66

               
               
               Conread position:227-494
               
               
               Cow position:chr20:12995740-12996032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):16, 162

               
               
               Conread position:227-494
               
               
               Cow position:chr20:15530117-15529846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:227-494
               
               
               Cow position:chr20:21345688-21345406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:228-338
               
               
               Cow position:chr20:26561964-26562076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:228-379
               
               
               Cow position:chr20:29755029-29754876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:228-392
               
               
               Cow position:chr20:34271580-34271414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:228-406
               
               
               Cow position:chr20:41977901-41977727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:228-414
               
               
               Cow position:chr20:32709188-32709380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-415
               
               
               Cow position:chr20:7934529-7934347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:228-425
               
               
               Cow position:chr20:20459842-20459646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:228-431
               
               
               Cow position:chr20:13805565-13805363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):155, 13

               
               
               Conread position:228-490
               
               
               Cow position:chr20:14980257-14980530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):163, 86

               
               
               Conread position:228-493
               
               
               Cow position:chr20:38818239-38817985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:228-494
               
               
               Cow position:chr20:11340554-11340820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:228-494
               
               
               Cow position:chr20:40177495-40177224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:229-414
               
               
               Cow position:chr20:31468406-31468596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 178

               
               
               Conread position:229-424
               
               
               Cow position:chr20:2316178-2316371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:229-427
               
               
               Cow position:chr20:19919569-19919766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):154, 97

               
               
               Conread position:229-442
               
               
               Cow position:chr20:31739968-31740183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:229-492
               
               
               Cow position:chr20:28605455-28605189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 89

               
               
               Conread position:229-493
               
               
               Cow position:chr20:26996783-26996513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:229-493
               
               
               Cow position:chr20:28594541-28594262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:229-494
               
               
               Cow position:chr20:23792844-23792588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:229-494
               
               
               Cow position:chr20:35710409-35710148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:230-310
               
               
               Cow position:chr20:39155966-39155886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:72
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-351
               
               
               Cow position:chr20:19899552-19899437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-359
               
               
               Cow position:chr20:33557643-33557512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:230-379
               
               
               Cow position:chr20:32067241-32067393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 134

               
               
               Conread position:230-384
               
               
               Cow position:chr20:14460632-14460476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-389
               
               
               Cow position:chr20:13995058-13994904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:230-390
               
               
               Cow position:chr20:23506184-23506024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:230-390
               
               
               Cow position:chr20:26090714-26090866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-390
               
               
               Cow position:chr20:34881155-34881308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:230-391
               
               
               Cow position:chr20:14755595-14755752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr20:20202468-20202299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 115

               
               
               Conread position:230-411
               
               
               Cow position:chr20:34097700-34097885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-412
               
               
               Cow position:chr20:4931327-4931153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr20:7132874-7132691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 114

               
               
               Conread position:230-416
               
               
               Cow position:chr20:37273241-37273061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr20:1824383-1824566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 88

               
               
               Conread position:230-417
               
               
               Cow position:chr20:9033968-9034154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:230-417
               
               
               Cow position:chr20:15118526-15118338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr20:26850535-26850724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr20:28296546-28296356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr20:33359221-33359411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:230-417
               
               
               Cow position:chr20:36097771-36097585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 169

               
               
               Conread position:230-417
               
               
               Cow position:chr20:36239498-36239309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:230-424
               
               
               Cow position:chr20:25021679-25021482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):76, 148

               
               
               Conread position:230-437
               
               
               Cow position:chr20:30710395-30710594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:230-442
               
               
               Cow position:chr20:3141823-3141610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr20:5365176-5364966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:230-442
               
               
               Cow position:chr20:6054259-6054473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:230-442
               
               
               Cow position:chr20:14283171-14282956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:230-442
               
               
               Cow position:chr20:30639530-30639747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:230-442
               
               
               Cow position:chr20:30744473-30744685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr20:32523711-32523500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-451
               
               
               Cow position:chr20:11043212-11043445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:230-465
               
               
               Cow position:chr20:19328646-19328402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:230-478
               
               
               Cow position:chr20:29990201-29990448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:230-483
               
               
               Cow position:chr20:35742019-35741755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 207

               
               
               Conread position:230-490
               
               
               Cow position:chr20:10200598-10200325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:230-491
               
               
               Cow position:chr20:13023254-13023513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:230-493
               
               
               Cow position:chr20:5024718-5024966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:230-493
               
               
               Cow position:chr20:16818666-16818396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-493
               
               
               Cow position:chr20:17251967-17251695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr20:24712088-24711815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:230-493
               
               
               Cow position:chr20:38515037-38514761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:230-494
               
               
               Cow position:chr20:4755586-4755853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr20:7737986-7738248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 81

               
               
               Conread position:230-494
               
               
               Cow position:chr20:11359391-11359651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):181, 33

               
               
               Conread position:230-494
               
               
               Cow position:chr20:14620063-14620331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:230-494
               
               
               Cow position:chr20:38090164-38089890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr20:38868869-38868622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):189, 36

               
               
               Conread position:230-494
               
               
               Cow position:chr20:39398729-39398464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 13

               
               
               Conread position:230-494
               
               
               Cow position:chr20:39417655-39417917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):213, 24

               
               
               Conread position:230-496
               
               
               Cow position:chr20:3255282-3255020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 90

               
               
               Conread position:230-496
               
               
               Cow position:chr20:27407647-27407898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:231-355
               
               
               Cow position:chr20:11909438-11909563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:231-392
               
               
               Cow position:chr20:12652680-12652843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:231-398
               
               
               Cow position:chr20:23879859-23880026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 150

               
               
               Conread position:231-399
               
               
               Cow position:chr20:21210275-21210113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr20:41089545-41089716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:231-405
               
               
               Cow position:chr20:22012636-22012470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr20:11499250-11499081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:231-407
               
               
               Cow position:chr20:5978596-5978774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:231-417
               
               
               Cow position:chr20:11920485-11920668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:231-417
               
               
               Cow position:chr20:39016622-39016810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:231-439
               
               
               Cow position:chr20:26040850-26041059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:231-442
               
               
               Cow position:chr20:7416913-7417131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr20:37090885-37090658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-456
               
               
               Cow position:chr20:21721467-21721231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 43

               
               
               Conread position:231-469
               
               
               Cow position:chr20:2298545-2298778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr20:5078883-5078602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr20:6248352-6248625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:231-494
               
               
               Cow position:chr20:11741069-11741322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):188, 71

               
               
               Conread position:231-494
               
               
               Cow position:chr20:12581709-12581978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr20:21428405-21428138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-496
               
               
               Cow position:chr20:6240273-6240545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:231-496
               
               
               Cow position:chr20:36741709-36741452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:232-340
               
               
               Cow position:chr20:32550275-32550384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr20:4668942-4668822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:232-370
               
               
               Cow position:chr20:3502746-3502618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-380
               
               
               Cow position:chr20:40578428-40578568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr20:33462475-33462308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:232-397
               
               
               Cow position:chr20:35310576-35310407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 132

               
               
               Conread position:232-399
               
               
               Cow position:chr20:8245963-8245799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:232-399
               
               
               Cow position:chr20:27315223-27315058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:232-417
               
               
               Cow position:chr20:8021383-8021188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-423
               
               
               Cow position:chr20:12334577-12334392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:232-425
               
               
               Cow position:chr20:8679414-8679610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:232-426
               
               
               Cow position:chr20:8821496-8821684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-431
               
               
               Cow position:chr20:1999630-1999427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:232-434
               
               
               Cow position:chr20:5078523-5078318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 54

               
               
               Conread position:232-442
               
               
               Cow position:chr20:15766362-15766146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:232-467
               
               
               Cow position:chr20:36779473-36779716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 221

               
               
               Conread position:232-488
               
               
               Cow position:chr20:20967565-20967303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:232-489
               
               
               Cow position:chr20:38430773-38431025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:232-489
               
               
               Cow position:chr20:40422852-40423119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:232-493
               
               
               Cow position:chr20:18379623-18379355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr20:14807129-14806864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr20:28982945-28982677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:232-496
               
               
               Cow position:chr20:12420373-12420643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-496
               
               
               Cow position:chr20:39743549-39743282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:233-312
               
               
               Cow position:chr20:26125929-26126008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:80
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-341
               
               
               Cow position:chr20:3606661-3606765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:233-348
               
               
               Cow position:chr20:6048318-6048435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:233-381
               
               
               Cow position:chr20:38700883-38701025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:233-387
               
               
               Cow position:chr20:5172854-5172704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:233-397
               
               
               Cow position:chr20:297759-297926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr20:15760323-15760493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 135

               
               
               Conread position:233-404
               
               
               Cow position:chr20:10956554-10956389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr20:31078031-31077849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:233-414
               
               
               Cow position:chr20:21018667-21018489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-426
               
               
               Cow position:chr20:22923159-22922970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):190, 57

               
               
               Conread position:233-442
               
               
               Cow position:chr20:4334293-4334494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):110, 76

               
               
               Conread position:233-442
               
               
               Cow position:chr20:23846420-23846629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):156, 85

               
               
               Conread position:233-490
               
               
               Cow position:chr20:42166544-42166800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):183, 50

               
               
               Conread position:233-494
               
               
               Cow position:chr20:15548647-15548922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:234-319
               
               
               Cow position:chr20:1009187-1009271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:234-345
               
               
               Cow position:chr20:6765215-6765105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 83

               
               
               Conread position:234-391
               
               
               Cow position:chr20:10715425-10715272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:234-417
               
               
               Cow position:chr20:4998864-4999050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr20:11541902-11542084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:234-417
               
               
               Cow position:chr20:17370001-17370189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:234-426
               
               
               Cow position:chr20:38664339-38664143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:234-427
               
               
               Cow position:chr20:31845044-31845234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-442
               
               
               Cow position:chr20:24097239-24097037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):189, 60

               
               
               Conread position:234-442
               
               
               Cow position:chr20:34202886-34202671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):50, 129

               
               
               Conread position:234-442
               
               
               Cow position:chr20:35146258-35146057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:234-478
               
               
               Cow position:chr20:4945006-4945254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:234-494
               
               
               Cow position:chr20:10209051-10208784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):182, 84

               
               
               Conread position:234-494
               
               
               Cow position:chr20:11611925-11611662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 91

               
               
               Conread position:234-494
               
               
               Cow position:chr20:20892432-20892689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:234-494
               
               
               Cow position:chr20:39518255-39517985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:235-337
               
               
               Cow position:chr20:2828019-2827919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-392
               
               
               Cow position:chr20:17606721-17606880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-392
               
               
               Cow position:chr20:21344713-21344554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr20:41313623-41313474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:235-399
               
               
               Cow position:chr20:6370537-6370374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:235-399
               
               
               Cow position:chr20:17840985-17840825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:235-414
               
               
               Cow position:chr20:27323512-27323331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-414
               
               
               Cow position:chr20:33434916-33435090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:235-418
               
               
               Cow position:chr20:41515009-41514823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:235-424
               
               
               Cow position:chr20:34348969-34349159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:235-424
               
               
               Cow position:chr20:37609866-37609679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:235-438
               
               
               Cow position:chr20:21291912-21291700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:235-442
               
               
               Cow position:chr20:14490485-14490286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:235-442
               
               
               Cow position:chr20:29845298-29845087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-443
               
               
               Cow position:chr20:23935935-23936149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 143

               
               
               Conread position:235-466
               
               
               Cow position:chr20:23549000-23548757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:235-472
               
               
               Cow position:chr20:11002647-11002403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-474
               
               
               Cow position:chr20:13067906-13068162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:235-479
               
               
               Cow position:chr20:35589440-35589688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:235-481
               
               
               Cow position:chr20:32847586-32847333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:235-488
               
               
               Cow position:chr20:13876466-13876720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:235-488
               
               
               Cow position:chr20:33623316-33623562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:235-490
               
               
               Cow position:chr20:34221725-34221464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:235-494
               
               
               Cow position:chr20:5950397-5950663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr20:11548485-11548743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:235-494
               
               
               Cow position:chr20:12126058-12126326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr20:22065304-22065047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:235-494
               
               
               Cow position:chr20:34083964-34083698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:235-494
               
               
               Cow position:chr20:35193002-35192756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:236-389
               
               
               Cow position:chr20:17529958-17530103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:236-438
               
               
               Cow position:chr20:33532532-33532343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):183, 62

               
               
               Conread position:236-464
               
               
               Cow position:chr20:381892-382119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):180, 23

               
               
               Conread position:236-490
               
               
               Cow position:chr20:5702964-5702704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:238-366
               
               
               Cow position:chr20:23103432-23103312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:238-389
               
               
               Cow position:chr20:16566529-16566387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:238-399
               
               
               Cow position:chr20:26790360-26790531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-410
               
               
               Cow position:chr20:5103983-5104156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:238-424
               
               
               Cow position:chr20:14607673-14607857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):181, 70

               
               
               Conread position:238-442
               
               
               Cow position:chr20:24314797-24314997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 25

               
               
               Conread position:238-469
               
               
               Cow position:chr20:3148921-3148692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:238-494
               
               
               Cow position:chr20:5998421-5998694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:239-442
               
               
               Cow position:chr20:37919137-37919334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):180, 29

               
               
               Conread position:240-355
               
               
               Cow position:chr20:34918646-34918529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:240-391
               
               
               Cow position:chr20:11661090-11661235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr20:15432647-15432800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:240-393
               
               
               Cow position:chr20:13829498-13829346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:240-397
               
               
               Cow position:chr20:24883122-24883283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-412
               
               
               Cow position:chr20:39229696-39229871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:240-413
               
               
               Cow position:chr20:24491789-24491962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:240-414
               
               
               Cow position:chr20:17544865-17544689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:240-414
               
               
               Cow position:chr20:34848141-34847971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr20:5703710-5703533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:240-427
               
               
               Cow position:chr20:1640229-1640402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 60

               
               
               Conread position:240-432
               
               
               Cow position:chr20:10236056-10235877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:240-440
               
               
               Cow position:chr20:11008411-11008208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr20:3564391-3564196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:240-442
               
               
               Cow position:chr20:19635940-19636140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:240-442
               
               
               Cow position:chr20:36312273-36312472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:240-452
               
               
               Cow position:chr20:23358256-23358463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):179, 143

               
               
               Conread position:240-464
               
               
               Cow position:chr20:11751892-11751670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-481
               
               
               Cow position:chr20:25009395-25009638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 73

               
               
               Conread position:240-484
               
               
               Cow position:chr20:25953505-25953255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:240-489
               
               
               Cow position:chr20:4891880-4892123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:240-493
               
               
               Cow position:chr20:28441557-28441308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:240-494
               
               
               Cow position:chr20:398074-398326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):179, 72

               
               
               Conread position:240-494
               
               
               Cow position:chr20:7438619-7438875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:240-494
               
               
               Cow position:chr20:7658987-7659240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:240-494
               
               
               Cow position:chr20:8556032-8556292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr20:16941044-16941312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-496
               
               
               Cow position:chr20:5009970-5009711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 85

               
               
               Conread position:241-382
               
               
               Cow position:chr20:17524512-17524369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:241-409
               
               
               Cow position:chr20:26387693-26387531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:241-414
               
               
               Cow position:chr20:20934497-20934667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-438
               
               
               Cow position:chr20:14880023-14879829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:241-494
               
               
               Cow position:chr20:7624022-7624270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):181, 67

               
               
               Conread position:241-494
               
               
               Cow position:chr20:8578492-8578226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:242-417
               
               
               Cow position:chr20:35442045-35442220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-492
               
               
               Cow position:chr20:25161895-25162148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):177, 43

               
               
               Conread position:242-494
               
               
               Cow position:chr20:18423912-18423676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:242-494
               
               
               Cow position:chr20:20898353-20898612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):174, 219

               
               
               Conread position:242-494
               
               
               Cow position:chr20:24070038-24069782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:243-399
               
               
               Cow position:chr20:24657425-24657273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:243-440
               
               
               Cow position:chr20:39268847-39269047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:244-475
               
               
               Cow position:chr20:41473516-41473736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):158, 34

               
               
               Conread position:245-414
               
               
               Cow position:chr20:38872766-38872936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:245-442
               
               
               Cow position:chr20:11135519-11135725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:246-442
               
               
               Cow position:chr20:23590518-23590711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:247-431
               
               
               Cow position:chr20:35444875-35445056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):172, 19

               
               
               Conread position:247-442
               
               
               Cow position:chr20:2819779-2819579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:247-488
               
               
               Cow position:chr20:16291922-16291678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:247-494
               
               
               Cow position:chr20:7425967-7426216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:247-494
               
               
               Cow position:chr20:8547291-8547043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 26

               
               
               Conread position:247-496
               
               
               Cow position:chr20:13752444-13752210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:248-379
               
               
               Cow position:chr20:10469275-10469142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:248-405
               
               
               Cow position:chr20:4789631-4789777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr20:33976719-33976521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 144

               
               
               Conread position:248-494
               
               
               Cow position:chr20:10188505-10188252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 97

               
               
               Conread position:249-442
               
               
               Cow position:chr20:18488156-18487963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:250-393
               
               
               Cow position:chr20:12033398-12033535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:250-414
               
               
               Cow position:chr20:6849123-6848960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:251-399
               
               
               Cow position:chr20:354671-354821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:251-490
               
               
               Cow position:chr20:16548045-16548295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:251-494
               
               
               Cow position:chr20:33067132-33067387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:254-494
               
               
               Cow position:chr20:37903887-37904125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 167

               
               
               Conread position:255-494
               
               
               Cow position:chr20:31746413-31746650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:259-430
               
               
               Cow position:chr20:2762192-2762018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:259-442
               
               
               Cow position:chr20:9433801-9433623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):160, 51

               
               
               Conread position:259-484
               
               
               Cow position:chr20:18831661-18831887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:260-494
               
               
               Cow position:chr20:31927242-31927477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:261-484
               
               
               Cow position:chr20:22959128-22959355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:262-421
               
               
               Cow position:chr20:25474772-25474611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:262-442
               
               
               Cow position:chr20:10245840-10246017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:262-494
               
               
               Cow position:chr20:11550579-11550344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:263-431
               
               
               Cow position:chr20:630738-630572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:265-407
               
               
               Cow position:chr20:32555496-32555362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:265-441
               
               
               Cow position:chr20:2742921-2743100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:266-494
               
               
               Cow position:chr20:32865987-32866211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):153, 22

               
               
               Conread position:269-494
               
               
               Cow position:chr20:12239477-12239710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):150, 50

               
               
               Conread position:269-494
               
               
               Cow position:chr20:32463317-32463543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:270-493
               
               
               Cow position:chr20:20203423-20203195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:273-399
               
               
               Cow position:chr20:11822683-11822558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:273-494
               
               
               Cow position:chr20:17100564-17100339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:274-397
               
               
               Cow position:chr20:34467748-34467868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:274-427
               
               
               Cow position:chr20:15515226-15515388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:274-439
               
               
               Cow position:chr20:36671218-36671393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:274-494
               
               
               Cow position:chr20:13652166-13652388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):145, 28

               
               
               Conread position:274-494
               
               
               Cow position:chr20:20099391-20099618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:276-492
               
               
               Cow position:chr20:19060638-19060859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):138, 41

               
               
               Conread position:277-494
               
               
               Cow position:chr20:22485063-22484841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:295-496
               
               
               Cow position:chr20:23870635-23870844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:297-496
               
               
               Cow position:chr20:21815747-21815537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 198

               
               
               Conread position:300-494
               
               
               Cow position:chr20:15565652-15565847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:300-494
               
               
               Cow position:chr20:26723502-26723696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:301-472
               
               
               Cow position:chr20:17846136-17845966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):142, 33

               
               
               Conread position:302-442
               
               
               Cow position:chr20:40158079-40157936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-491
               
               
               Cow position:chr20:7363136-7362946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:302-494
               
               
               Cow position:chr20:20056309-20056506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 85

               
               
               Conread position:302-494
               
               
               Cow position:chr20:22030494-22030298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:302-496
               
               
               Cow position:chr20:5827117-5826917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:303-490
               
               
               Cow position:chr20:9537306-9537119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:304-493
               
               
               Cow position:chr20:9412664-9412468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:305-442
               
               
               Cow position:chr20:23678537-23678681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr20:22978501-22978304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:307-480
               
               
               Cow position:chr20:2169551-2169731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 164

               
               
               Conread position:307-494
               
               
               Cow position:chr20:19751479-19751286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:308-442
               
               
               Cow position:chr20:580749-580884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:311-493
               
               
               Cow position:chr20:34777350-34777159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:312-482
               
               
               Cow position:chr20:11392942-11392772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 7

               
               
               Conread position:315-494
               
               
               Cow position:chr20:19363199-19363387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:324-467
               
               
               Cow position:chr20:19459510-19459652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:324-493
               
               
               Cow position:chr20:38768308-38768477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:324-494
               
               
               Cow position:chr20:18320639-18320813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:325-442
               
               
               Cow position:chr20:8817337-8817455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:325-461
               
               
               Cow position:chr20:26077514-26077653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:326-494
               
               
               Cow position:chr20:39266805-39266980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 85

               
               
               Conread position:329-494
               
               
               Cow position:chr20:11542137-11542305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:332-494
               
               
               Cow position:chr20:6358767-6358593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:336-494
               
               
               Cow position:chr20:33363661-33363493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:198-392
               
               
               Cow position:chr21:39788236-39788431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:206-424
               
               
               Cow position:chr21:4109070-4108850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:208-312
               
               
               Cow position:chr21:22465832-22465725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:214-496
               
               
               Cow position:chr21:44565443-44565723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:215-494
               
               
               Cow position:chr21:82349-82078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:216-417
               
               
               Cow position:chr21:34010113-34010313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:216-442
               
               
               Cow position:chr21:41140430-41140660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 207

               
               
               Conread position:216-494
               
               
               Cow position:chr21:20160960-20160677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:218-426
               
               
               Cow position:chr21:27810676-27810463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:218-490
               
               
               Cow position:chr21:16152722-16152439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:220-342
               
               
               Cow position:chr21:48229683-48229562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:222-385
               
               
               Cow position:chr21:2787515-2787681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:222-397
               
               
               Cow position:chr21:18495493-18495324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:222-406
               
               
               Cow position:chr21:44732766-44732949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:222-440
               
               
               Cow position:chr21:27677761-27677541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 204

               
               
               Conread position:222-469
               
               
               Cow position:chr21:8713680-8713931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 141

               
               
               Conread position:222-494
               
               
               Cow position:chr21:10656823-10657103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:222-494
               
               
               Cow position:chr21:11027081-11027354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:222-494
               
               
               Cow position:chr21:20260021-20260322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:223-399
               
               
               Cow position:chr21:45537466-45537285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:223-404
               
               
               Cow position:chr21:5218984-5218805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:223-406
               
               
               Cow position:chr21:45970901-45971080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:223-469
               
               
               Cow position:chr21:18059683-18059929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 140

               
               
               Conread position:223-490
               
               
               Cow position:chr21:957946-957675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:223-492
               
               
               Cow position:chr21:45835113-45835401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:223-493
               
               
               Cow position:chr21:6713249-6713526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:223-494
               
               
               Cow position:chr21:6834326-6834049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:224-387
               
               
               Cow position:chr21:28604358-28604204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:225-383
               
               
               Cow position:chr21:38867103-38867250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:225-407
               
               
               Cow position:chr21:37360966-37361149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:225-442
               
               
               Cow position:chr21:9905589-9905792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-495
               
               
               Cow position:chr21:10978672-10978942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:226-442
               
               
               Cow position:chr21:26018654-26018436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 121

               
               
               Conread position:227-339
               
               
               Cow position:chr21:10014054-10014170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-355
               
               
               Cow position:chr21:20185518-20185393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:227-364
               
               
               Cow position:chr21:42227425-42227563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:227-370
               
               
               Cow position:chr21:10727782-10727639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-373
               
               
               Cow position:chr21:34209743-34209889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:227-376
               
               
               Cow position:chr21:37479319-37479469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:227-379
               
               
               Cow position:chr21:16099288-16099444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:227-388
               
               
               Cow position:chr21:33169870-33169707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:227-397
               
               
               Cow position:chr21:45446809-45446637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:227-406
               
               
               Cow position:chr21:6292024-6291840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr21:29011704-29011876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-410
               
               
               Cow position:chr21:42455130-42454951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:227-411
               
               
               Cow position:chr21:30938394-30938577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:227-413
               
               
               Cow position:chr21:41193881-41194068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:227-414
               
               
               Cow position:chr21:7201423-7201235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):94, 79

               
               
               Conread position:227-417
               
               
               Cow position:chr21:5214628-5214431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 143

               
               
               Conread position:227-417
               
               
               Cow position:chr21:9278800-9278606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr21:10751318-10751127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:227-417
               
               
               Cow position:chr21:17184190-17184000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:227-417
               
               
               Cow position:chr21:30970208-30970018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:227-421
               
               
               Cow position:chr21:6998213-6998025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):192, 70

               
               
               Conread position:227-422
               
               
               Cow position:chr21:45376219-45376029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr21:12154397-12154209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr21:30976992-30977181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:227-424
               
               
               Cow position:chr21:40059302-40059106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:227-434
               
               
               Cow position:chr21:16797124-16796918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:227-438
               
               
               Cow position:chr21:8240582-8240373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:227-442
               
               
               Cow position:chr21:13580687-13580470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:227-442
               
               
               Cow position:chr21:19561292-19561511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-442
               
               
               Cow position:chr21:27711962-27712186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr21:38901035-38900831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-469
               
               
               Cow position:chr21:14027338-14027094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:227-472
               
               
               Cow position:chr21:6851435-6851202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-472
               
               
               Cow position:chr21:17403574-17403821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:227-480
               
               
               Cow position:chr21:31652659-31652405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:227-492
               
               
               Cow position:chr21:17638167-17637902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 221

               
               
               Conread position:227-493
               
               
               Cow position:chr21:7169959-7169686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):192, 89

               
               
               Conread position:227-493
               
               
               Cow position:chr21:8545747-8546018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:227-493
               
               
               Cow position:chr21:23673018-23672750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:227-493
               
               
               Cow position:chr21:36508502-36508241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):216, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr21:9505141-9504876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 166

               
               
               Conread position:227-494
               
               
               Cow position:chr21:12461697-12461971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr21:13584780-13585055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):85, 200

               
               
               Conread position:227-494
               
               
               Cow position:chr21:15543966-15544219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:227-494
               
               
               Cow position:chr21:23587144-23586879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:227-494
               
               
               Cow position:chr21:27229531-27229795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):192, 77

               
               
               Conread position:227-494
               
               
               Cow position:chr21:30835638-30835362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr21:40266396-40266123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-494
               
               
               Cow position:chr21:43388632-43388350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:227-494
               
               
               Cow position:chr21:44214383-44214123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 84

               
               
               Conread position:227-494
               
               
               Cow position:chr21:46848862-46849128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):182, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr21:47464847-47465122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 91

               
               
               Conread position:228-399
               
               
               Cow position:chr21:22720838-22720673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):108, 90

               
               
               Conread position:228-407
               
               
               Cow position:chr21:40589208-40589389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:228-411
               
               
               Cow position:chr21:27568165-27567983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:228-414
               
               
               Cow position:chr21:8924642-8924455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 56

               
               
               Conread position:228-426
               
               
               Cow position:chr21:22851186-22850994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):102, 80

               
               
               Conread position:228-442
               
               
               Cow position:chr21:868647-868867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr21:28244738-28244528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:228-490
               
               
               Cow position:chr21:38720519-38720255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:228-492
               
               
               Cow position:chr21:24598914-24598656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:228-494
               
               
               Cow position:chr21:28924395-28924109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:228-494
               
               
               Cow position:chr21:31159657-31159402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 50

               
               
               Conread position:228-494
               
               
               Cow position:chr21:32339474-32339738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 73

               
               
               Conread position:228-494
               
               
               Cow position:chr21:39888455-39888749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:228-496
               
               
               Cow position:chr21:21616046-21615771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:229-305
               
               
               Cow position:chr21:43411431-43411355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:77
               
               
               Alignm identity:70
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-379
               
               
               Cow position:chr21:40571201-40571345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:229-399
               
               
               Cow position:chr21:6042059-6041885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr21:22121772-22121592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:229-430
               
               
               Cow position:chr21:8506274-8506477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:229-430
               
               
               Cow position:chr21:8509162-8509365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:229-431
               
               
               Cow position:chr21:11182819-11182621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):190, 54

               
               
               Conread position:229-490
               
               
               Cow position:chr21:10004613-10004884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):88, 165

               
               
               Conread position:229-494
               
               
               Cow position:chr21:26562889-26563160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:230-313
               
               
               Cow position:chr21:14016544-14016461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-324
               
               
               Cow position:chr21:39335463-39335557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 81

               
               
               Conread position:230-340
               
               
               Cow position:chr21:28955888-28955780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-374
               
               
               Cow position:chr21:13488824-13488678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:230-382
               
               
               Cow position:chr21:30359081-30359227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 88

               
               
               Conread position:230-387
               
               
               Cow position:chr21:17857034-17856878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr21:12473793-12473949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-390
               
               
               Cow position:chr21:5345150-5344988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-396
               
               
               Cow position:chr21:19990550-19990713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr21:4568703-4568534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:230-397
               
               
               Cow position:chr21:32536660-32536499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr21:38482651-38482482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr21:42145088-42144926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr21:7208505-7208668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:230-398
               
               
               Cow position:chr21:7424742-7424912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr21:24757206-24757041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:230-399
               
               
               Cow position:chr21:26828702-26828873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr21:42680327-42680503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):92, 165

               
               
               Conread position:230-407
               
               
               Cow position:chr21:9873589-9873410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:230-409
               
               
               Cow position:chr21:11678050-11678221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:230-410
               
               
               Cow position:chr21:8494913-8494730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:230-411
               
               
               Cow position:chr21:13134866-13134690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:230-413
               
               
               Cow position:chr21:12529980-12530163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:230-414
               
               
               Cow position:chr21:31278457-31278269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr21:15869955-15869774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:230-416
               
               
               Cow position:chr21:19148382-19148194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:230-417
               
               
               Cow position:chr21:8986295-8986105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):83, 181

               
               
               Conread position:230-417
               
               
               Cow position:chr21:10587215-10587404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr21:14247405-14247218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:230-417
               
               
               Cow position:chr21:17155679-17155869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr21:17842726-17842914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 131

               
               
               Conread position:230-417
               
               
               Cow position:chr21:22193825-22194016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr21:22211525-22211336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr21:27521073-27521256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr21:34737430-34737249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:230-423
               
               
               Cow position:chr21:49699768-49699964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-424
               
               
               Cow position:chr21:48334516-48334716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:230-429
               
               
               Cow position:chr21:27409469-27409662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr21:5898140-5898344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr21:12541128-12541342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 161

               
               
               Conread position:230-442
               
               
               Cow position:chr21:20318781-20318570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:230-442
               
               
               Cow position:chr21:25012347-25012139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr21:27863250-27863456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):192, 82

               
               
               Conread position:230-442
               
               
               Cow position:chr21:36763331-36763118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr21:37928920-37928706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr21:39394018-39393805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:230-442
               
               
               Cow position:chr21:40291485-40291689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):179, 25

               
               
               Conread position:230-442
               
               
               Cow position:chr21:40475770-40475556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr21:41974097-41974317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 189

               
               
               Conread position:230-463
               
               
               Cow position:chr21:12322767-12322530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):189, 198

               
               
               Conread position:230-468
               
               
               Cow position:chr21:19702999-19702757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):186, 71

               
               
               Conread position:230-468
               
               
               Cow position:chr21:44251572-44251810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:230-480
               
               
               Cow position:chr21:4281615-4281860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 17

               
               
               Conread position:230-480
               
               
               Cow position:chr21:24342996-24343250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-485
               
               
               Cow position:chr21:3178114-3177862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:230-490
               
               
               Cow position:chr21:42501321-42501042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr21:641853-641585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 83

               
               
               Conread position:230-494
               
               
               Cow position:chr21:643589-643323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:230-494
               
               
               Cow position:chr21:7673382-7673119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:230-494
               
               
               Cow position:chr21:11779269-11779530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):76, 148

               
               
               Conread position:230-494
               
               
               Cow position:chr21:18155295-18155568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 65

               
               
               Conread position:230-494
               
               
               Cow position:chr21:19059822-19060088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:230-494
               
               
               Cow position:chr21:20165909-20165640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:230-494
               
               
               Cow position:chr21:21907172-21907430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr21:25127880-25127601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 123

               
               
               Conread position:230-494
               
               
               Cow position:chr21:26392196-26391931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 217

               
               
               Conread position:230-494
               
               
               Cow position:chr21:33982545-33982807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-494
               
               
               Cow position:chr21:38449183-38449448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):172, 88

               
               
               Conread position:230-495
               
               
               Cow position:chr21:9416510-9416246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):164, 38

               
               
               Conread position:230-496
               
               
               Cow position:chr21:6051774-6051502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:231-349
               
               
               Cow position:chr21:33360259-33360136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:231-364
               
               
               Cow position:chr21:37014157-37014292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr21:3236771-3236638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-379
               
               
               Cow position:chr21:11761830-11761684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-385
               
               
               Cow position:chr21:14464854-14464698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:231-397
               
               
               Cow position:chr21:40089497-40089665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:231-399
               
               
               Cow position:chr21:16119894-16120060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr21:32272197-32272021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:231-399
               
               
               Cow position:chr21:39845870-39845694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr21:37495676-37495852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:231-407
               
               
               Cow position:chr21:8523900-8523734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr21:36121497-36121310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:231-424
               
               
               Cow position:chr21:34738839-34738655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:231-427
               
               
               Cow position:chr21:5465015-5464820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):188, 92

               
               
               Conread position:231-430
               
               
               Cow position:chr21:15271171-15271365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:231-437
               
               
               Cow position:chr21:10138207-10137997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:231-437
               
               
               Cow position:chr21:30848680-30848879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):188, 84

               
               
               Conread position:231-442
               
               
               Cow position:chr21:25014772-25014969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:231-443
               
               
               Cow position:chr21:16498783-16498575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:231-450
               
               
               Cow position:chr21:39403260-39403476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:231-475
               
               
               Cow position:chr21:31279521-31279277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):190, 87

               
               
               Conread position:231-485
               
               
               Cow position:chr21:39319142-39319406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:231-492
               
               
               Cow position:chr21:12354434-12354694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:231-494
               
               
               Cow position:chr21:802055-802308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:231-494
               
               
               Cow position:chr21:938289-938027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:231-494
               
               
               Cow position:chr21:5427195-5426940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):188, 73

               
               
               Conread position:231-494
               
               
               Cow position:chr21:16604046-16604319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-494
               
               
               Cow position:chr21:31253797-31253543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:231-494
               
               
               Cow position:chr21:32559103-32559362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:231-496
               
               
               Cow position:chr21:976881-977146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:232-335
               
               
               Cow position:chr21:28566837-28566935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:232-360
               
               
               Cow position:chr21:5489017-5488889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-364
               
               
               Cow position:chr21:908181-908307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-377
               
               
               Cow position:chr21:48242783-48242933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:232-379
               
               
               Cow position:chr21:30368341-30368197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-406
               
               
               Cow position:chr21:29418840-29418662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:232-406
               
               
               Cow position:chr21:30031128-30031292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr21:14516209-14516032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:232-417
               
               
               Cow position:chr21:37789736-37789916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr21:41041215-41041027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 103

               
               
               Conread position:232-424
               
               
               Cow position:chr21:12349035-12348843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 127

               
               
               Conread position:232-431
               
               
               Cow position:chr21:46451705-46451886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):187, 57

               
               
               Conread position:232-442
               
               
               Cow position:chr21:1735118-1735321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:232-442
               
               
               Cow position:chr21:15012698-15012496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-443
               
               
               Cow position:chr21:13090644-13090430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:232-482
               
               
               Cow position:chr21:36682593-36682332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:232-490
               
               
               Cow position:chr21:12104620-12104367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):172, 76

               
               
               Conread position:232-490
               
               
               Cow position:chr21:12339884-12339640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):219, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr21:742541-742284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:232-494
               
               
               Cow position:chr21:11739854-11740122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:232-494
               
               
               Cow position:chr21:29213892-29214160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:232-494
               
               
               Cow position:chr21:37299727-37299457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr21:41590299-41590567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):184, 81

               
               
               Conread position:232-494
               
               
               Cow position:chr21:41917972-41918247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:232-494
               
               
               Cow position:chr21:44825608-44825892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:232-496
               
               
               Cow position:chr21:34654337-34654073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:233-340
               
               
               Cow position:chr21:785546-785653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:233-342
               
               
               Cow position:chr21:41668894-41668787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-345
               
               
               Cow position:chr21:40432730-40432622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:233-389
               
               
               Cow position:chr21:5789624-5789473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-397
               
               
               Cow position:chr21:43655968-43655805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr21:646049-646216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:233-399
               
               
               Cow position:chr21:3379487-3379651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:233-407
               
               
               Cow position:chr21:438822-438655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-439
               
               
               Cow position:chr21:20174578-20174378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:233-442
               
               
               Cow position:chr21:30145367-30145571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:233-493
               
               
               Cow position:chr21:46264457-46264171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):63, 246

               
               
               Conread position:233-494
               
               
               Cow position:chr21:71852-71584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):186, 85

               
               
               Conread position:233-494
               
               
               Cow position:chr21:27568893-27569172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):86, 177

               
               
               Conread position:233-494
               
               
               Cow position:chr21:32297242-32297509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 192

               
               
               Conread position:233-494
               
               
               Cow position:chr21:37480230-37479952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):151, 81

               
               
               Conread position:234-350
               
               
               Cow position:chr21:20166046-20165931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:234-350
               
               
               Cow position:chr21:35337661-35337772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr21:47383284-47383452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):166, 60

               
               
               Conread position:234-407
               
               
               Cow position:chr21:3135603-3135776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:234-411
               
               
               Cow position:chr21:27744294-27744114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr21:41738173-41737994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:234-417
               
               
               Cow position:chr21:700524-700709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:234-417
               
               
               Cow position:chr21:11340653-11340468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr21:21940146-21940324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr21:37706147-37706332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-430
               
               
               Cow position:chr21:13883742-13883550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:234-442
               
               
               Cow position:chr21:14452498-14452291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:234-442
               
               
               Cow position:chr21:25345129-25344918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr21:26735662-26735466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr21:40820586-40820796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 112

               
               
               Conread position:234-444
               
               
               Cow position:chr21:6583876-6584083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:234-485
               
               
               Cow position:chr21:9477429-9477175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 112

               
               
               Conread position:234-485
               
               
               Cow position:chr21:17519293-17519036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 217

               
               
               Conread position:234-490
               
               
               Cow position:chr21:23979914-23980177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:234-493
               
               
               Cow position:chr21:47312-47038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:234-493
               
               
               Cow position:chr21:44724111-44724365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr21:5970581-5970839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:234-494
               
               
               Cow position:chr21:7768691-7768433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):185, 34

               
               
               Conread position:234-494
               
               
               Cow position:chr21:8430832-8431103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr21:13589027-13588761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:234-494
               
               
               Cow position:chr21:19067798-19067529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr21:45906356-45906622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr21:47363459-47363739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:234-496
               
               
               Cow position:chr21:4400058-4399800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):185, 62

               
               
               Conread position:235-392
               
               
               Cow position:chr21:8558211-8558367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:235-392
               
               
               Cow position:chr21:10148263-10148105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-392
               
               
               Cow position:chr21:19176508-19176350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:235-404
               
               
               Cow position:chr21:8358965-8359129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-407
               
               
               Cow position:chr21:19220531-19220705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-411
               
               
               Cow position:chr21:1464607-1464432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:235-411
               
               
               Cow position:chr21:42189496-42189668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):164, 83

               
               
               Conread position:235-414
               
               
               Cow position:chr21:9301489-9301309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 100

               
               
               Conread position:235-414
               
               
               Cow position:chr21:15305031-15305213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:235-414
               
               
               Cow position:chr21:18450019-18449839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 128

               
               
               Conread position:235-416
               
               
               Cow position:chr21:39278028-39278213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr21:745434-745258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):105, 79

               
               
               Conread position:235-417
               
               
               Cow position:chr21:8950457-8950272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:235-430
               
               
               Cow position:chr21:24060928-24061124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:235-440
               
               
               Cow position:chr21:31658890-31659088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-442
               
               
               Cow position:chr21:2536872-2537082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-442
               
               
               Cow position:chr21:17559652-17559872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:235-442
               
               
               Cow position:chr21:41610443-41610224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr21:42328397-42328608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:235-491
               
               
               Cow position:chr21:41522149-41522405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr21:3585100-3585368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 257

               
               
               Conread position:235-494
               
               
               Cow position:chr21:4674727-4674478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr21:28919267-28919525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:235-494
               
               
               Cow position:chr21:29014653-29014914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):184, 79

               
               
               Conread position:235-494
               
               
               Cow position:chr21:30222606-30222342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):184, 70

               
               
               Conread position:235-494
               
               
               Cow position:chr21:33580675-33580420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):184, 53

               
               
               Conread position:235-494
               
               
               Cow position:chr21:38918466-38918202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:236-399
               
               
               Cow position:chr21:18341482-18341320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:236-420
               
               
               Cow position:chr21:12310736-12310557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:236-494
               
               
               Cow position:chr21:10264298-10264031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:237-430
               
               
               Cow position:chr21:31462819-31462633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:237-441
               
               
               Cow position:chr21:28907287-28907486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:238-417
               
               
               Cow position:chr21:12739349-12739163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 127

               
               
               Conread position:238-417
               
               
               Cow position:chr21:30231435-30231611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:238-494
               
               
               Cow position:chr21:22209982-22210245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr21:23822413-23822166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 113

               
               
               Conread position:238-494
               
               
               Cow position:chr21:46599619-46599358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):181, 68

               
               
               Conread position:239-380
               
               
               Cow position:chr21:37110927-37110791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:239-417
               
               
               Cow position:chr21:42017340-42017520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:239-442
               
               
               Cow position:chr21:10114072-10114273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:240-379
               
               
               Cow position:chr21:42341682-42341817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-380
               
               
               Cow position:chr21:46609744-46609884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr21:23783589-23783724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr21:15444823-15444975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:240-397
               
               
               Cow position:chr21:24797914-24797757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr21:41482714-41482872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:240-399
               
               
               Cow position:chr21:2785242-2785392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr21:23568484-23568321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:240-410
               
               
               Cow position:chr21:7460864-7460697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr21:40457867-40457690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:240-411
               
               
               Cow position:chr21:43316633-43316806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:240-414
               
               
               Cow position:chr21:11353323-11353146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:240-414
               
               
               Cow position:chr21:42146403-42146232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr21:20213512-20213694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:240-427
               
               
               Cow position:chr21:36115866-36115675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-439
               
               
               Cow position:chr21:44829497-44829699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-440
               
               
               Cow position:chr21:48482271-48482469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr21:24296506-24296711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:240-442
               
               
               Cow position:chr21:24875611-24875409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):166, 78

               
               
               Conread position:240-444
               
               
               Cow position:chr21:1562271-1562487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:240-445
               
               
               Cow position:chr21:30658120-30657924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):179, 65

               
               
               Conread position:240-469
               
               
               Cow position:chr21:17252718-17252952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):90, 169

               
               
               Conread position:240-471
               
               
               Cow position:chr21:20163967-20163732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:240-482
               
               
               Cow position:chr21:19868703-19868946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:240-490
               
               
               Cow position:chr21:9256397-9256654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:240-490
               
               
               Cow position:chr21:20153216-20152957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:240-490
               
               
               Cow position:chr21:30592055-30592304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):186, 75

               
               
               Conread position:240-492
               
               
               Cow position:chr21:8426702-8426447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:240-492
               
               
               Cow position:chr21:14126531-14126288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):208, 73

               
               
               Conread position:240-492
               
               
               Cow position:chr21:44658820-44658581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:240-492
               
               
               Cow position:chr21:47719046-47719306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):179, 12

               
               
               Conread position:240-493
               
               
               Cow position:chr21:16570148-16569901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr21:674927-674683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):176, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr21:8349581-8349327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr21:13656375-13656636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):69, 124

               
               
               Conread position:240-494
               
               
               Cow position:chr21:17874931-17875192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):60, 123

               
               
               Conread position:240-494
               
               
               Cow position:chr21:17890562-17890302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):121, 117

               
               
               Conread position:240-494
               
               
               Cow position:chr21:18318972-18318712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:240-494
               
               
               Cow position:chr21:20262088-20262335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr21:22014450-22014186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr21:22718524-22718785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:240-494
               
               
               Cow position:chr21:23535972-23535712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:240-494
               
               
               Cow position:chr21:28030538-28030287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):179, 33

               
               
               Conread position:240-494
               
               
               Cow position:chr21:36910996-36910739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):159, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr21:42135360-42135621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-494
               
               
               Cow position:chr21:48637497-48637761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:241-385
               
               
               Cow position:chr21:9315059-9314920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:241-390
               
               
               Cow position:chr21:42920742-42920894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 143

               
               
               Conread position:241-399
               
               
               Cow position:chr21:18055871-18056028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:241-406
               
               
               Cow position:chr21:21159061-21158905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:241-414
               
               
               Cow position:chr21:34727462-34727294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:241-414
               
               
               Cow position:chr21:46809506-46809680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:241-417
               
               
               Cow position:chr21:18783208-18783386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 107

               
               
               Conread position:241-418
               
               
               Cow position:chr21:41956943-41957129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):56, 141

               
               
               Conread position:241-422
               
               
               Cow position:chr21:28882441-28882257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:241-434
               
               
               Cow position:chr21:24351109-24350917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 137

               
               
               Conread position:241-442
               
               
               Cow position:chr21:1511544-1511350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr21:13225975-13225772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:241-485
               
               
               Cow position:chr21:29658532-29658287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:241-490
               
               
               Cow position:chr21:41621386-41621127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:241-493
               
               
               Cow position:chr21:24858574-24858313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr21:29069065-29069330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 236

               
               
               Conread position:241-494
               
               
               Cow position:chr21:36695832-36696091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:242-387
               
               
               Cow position:chr21:40846767-40846621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:242-389
               
               
               Cow position:chr21:41156128-41155981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-414
               
               
               Cow position:chr21:16794051-16793881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:242-469
               
               
               Cow position:chr21:13842750-13842521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 65

               
               
               Conread position:242-490
               
               
               Cow position:chr21:18568380-18568637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 81

               
               
               Conread position:242-494
               
               
               Cow position:chr21:29001890-29002159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:242-494
               
               
               Cow position:chr21:47713750-47714006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:243-467
               
               
               Cow position:chr21:11644710-11644932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:245-414
               
               
               Cow position:chr21:32647932-32648103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:245-417
               
               
               Cow position:chr21:14746026-14745852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-494
               
               
               Cow position:chr21:19240624-19240878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:246-382
               
               
               Cow position:chr21:40916734-40916601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:246-387
               
               
               Cow position:chr21:19339977-19340119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:246-407
               
               
               Cow position:chr21:17193495-17193658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 84

               
               
               Conread position:246-450
               
               
               Cow position:chr21:10072419-10072216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:246-473
               
               
               Cow position:chr21:12916165-12916393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:247-407
               
               
               Cow position:chr21:40930224-40930382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:247-494
               
               
               Cow position:chr21:22861244-22860998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):172, 56

               
               
               Conread position:248-392
               
               
               Cow position:chr21:31258720-31258574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:248-404
               
               
               Cow position:chr21:8351043-8351197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr21:19161966-19161769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 99

               
               
               Conread position:248-442
               
               
               Cow position:chr21:28237448-28237649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 149

               
               
               Conread position:248-477
               
               
               Cow position:chr21:24266310-24266544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 222

               
               
               Conread position:248-485
               
               
               Cow position:chr21:6317434-6317672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 99

               
               
               Conread position:248-490
               
               
               Cow position:chr21:41287545-41287792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):168, 72

               
               
               Conread position:248-494
               
               
               Cow position:chr21:14760808-14760571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):168, 31

               
               
               Conread position:249-442
               
               
               Cow position:chr21:7066135-7066324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):170, 74

               
               
               Conread position:250-494
               
               
               Cow position:chr21:3360767-3361014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):140, 64

               
               
               Conread position:250-494
               
               
               Cow position:chr21:7824941-7825178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):103, 64

               
               
               Conread position:250-494
               
               
               Cow position:chr21:10561336-10561585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):169, 58

               
               
               Conread position:251-494
               
               
               Cow position:chr21:10410471-10410219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:252-398
               
               
               Cow position:chr21:36398321-36398461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:256-494
               
               
               Cow position:chr21:828967-829213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 61

               
               
               Conread position:260-490
               
               
               Cow position:chr21:7377684-7377924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:261-388
               
               
               Cow position:chr21:41692291-41692162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:261-439
               
               
               Cow position:chr21:41579993-41579816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:262-399
               
               
               Cow position:chr21:42905158-42905297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:264-494
               
               
               Cow position:chr21:31691709-31691481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:265-389
               
               
               Cow position:chr21:3595802-3595924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:269-424
               
               
               Cow position:chr21:9346656-9346497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:270-446
               
               
               Cow position:chr21:6735964-6736137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):149, 38

               
               
               Conread position:273-389
               
               
               Cow position:chr21:1065359-1065243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-390
               
               
               Cow position:chr21:9590765-9590649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-390
               
               
               Cow position:chr21:9736936-9736820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr21:3015960-3016102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr21:4043756-4043614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:274-426
               
               
               Cow position:chr21:30243460-30243608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:274-439
               
               
               Cow position:chr21:13043800-13043961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):145, 43

               
               
               Conread position:274-490
               
               
               Cow position:chr21:17642764-17642981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):145, 46

               
               
               Conread position:274-494
               
               
               Cow position:chr21:19259041-19258823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):169, 41

               
               
               Conread position:274-494
               
               
               Cow position:chr21:28626461-28626239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 33

               
               
               Conread position:280-494
               
               
               Cow position:chr21:38121323-38121098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:280-494
               
               
               Cow position:chr21:42007240-42007464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:281-490
               
               
               Cow position:chr21:21169275-21169489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:283-411
               
               
               Cow position:chr21:45329738-45329861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:283-494
               
               
               Cow position:chr21:4280459-4280674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:283-494
               
               
               Cow position:chr21:9990727-9990509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:288-494
               
               
               Cow position:chr21:297952-297751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:295-494
               
               
               Cow position:chr21:12801544-12801753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:301-426
               
               
               Cow position:chr21:30622837-30622712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):118, 100

               
               
               Conread position:302-440
               
               
               Cow position:chr21:5341895-5342035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:302-492
               
               
               Cow position:chr21:33350939-33350741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 170

               
               
               Conread position:302-494
               
               
               Cow position:chr21:26245114-26244917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr21:36795803-36795599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:303-483
               
               
               Cow position:chr21:19359981-19360167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:303-492
               
               
               Cow position:chr21:35437292-35437478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 52

               
               
               Conread position:303-494
               
               
               Cow position:chr21:30250009-30250197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:303-496
               
               
               Cow position:chr21:13365539-13365337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 110

               
               
               Conread position:304-494
               
               
               Cow position:chr21:10538059-10538253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-490
               
               
               Cow position:chr21:7581710-7581899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-493
               
               
               Cow position:chr21:23321883-23322078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr21:27624894-27624708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:305-494
               
               
               Cow position:chr21:29014363-29014563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr21:33264039-33263840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:305-494
               
               
               Cow position:chr21:36297685-36297489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:305-496
               
               
               Cow position:chr21:5392342-5392541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:307-414
               
               
               Cow position:chr21:40305137-40305029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:307-427
               
               
               Cow position:chr21:25159364-25159244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:307-492
               
               
               Cow position:chr21:44515465-44515264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 181

               
               
               Conread position:307-494
               
               
               Cow position:chr21:29485171-29484978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:308-494
               
               
               Cow position:chr21:30980386-30980579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):111, 89

               
               
               Conread position:315-494
               
               
               Cow position:chr21:28191217-28191030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):128, 104

               
               
               Conread position:318-490
               
               
               Cow position:chr21:22465372-22465200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:324-492
               
               
               Cow position:chr21:28442908-28442743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:324-494
               
               
               Cow position:chr21:30990111-30990279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:324-494
               
               
               Cow position:chr21:33210364-33210201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:324-494
               
               
               Cow position:chr21:41046982-41046803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:324-494
               
               
               Cow position:chr21:45262634-45262814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:330-494
               
               
               Cow position:chr21:35354703-35354532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:332-494
               
               
               Cow position:chr21:724711-724887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:338-494
               
               
               Cow position:chr21:20183233-20183070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:349-492
               
               
               Cow position:chr21:42540071-42540223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:170-385
               
               
               Cow position:chr22:3325848-3325636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:179-494
               
               
               Cow position:chr22:14214114-14214431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:201-431
               
               
               Cow position:chr22:7584013-7584235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:203-425
               
               
               Cow position:chr22:31064643-31064413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:208-469
               
               
               Cow position:chr22:2643337-2643070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 142

               
               
               Conread position:212-494
               
               
               Cow position:chr22:12803170-12803455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):207, 11

               
               
               Conread position:213-490
               
               
               Cow position:chr22:20627051-20626775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:214-406
               
               
               Cow position:chr22:5674036-5673838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 184

               
               
               Conread position:215-391
               
               
               Cow position:chr22:7913671-7913503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:216-494
               
               
               Cow position:chr22:13957428-13957715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:217-397
               
               
               Cow position:chr22:32617940-32617755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 181

               
               
               Conread position:217-415
               
               
               Cow position:chr22:24890435-24890239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:219-417
               
               
               Cow position:chr22:22023117-22022917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:219-442
               
               
               Cow position:chr22:18926569-18926346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:220-442
               
               
               Cow position:chr22:1821377-1821595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:221-382
               
               
               Cow position:chr22:12997625-12997785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:221-390
               
               
               Cow position:chr22:12207495-12207663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:221-417
               
               
               Cow position:chr22:10468717-10468527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:221-434
               
               
               Cow position:chr22:30687233-30687022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:222-335
               
               
               Cow position:chr22:1953367-1953251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:222-440
               
               
               Cow position:chr22:40349551-40349336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):189, 96

               
               
               Conread position:222-456
               
               
               Cow position:chr22:14372377-14372146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):194, 98

               
               
               Conread position:222-467
               
               
               Cow position:chr22:12573415-12573171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):192, 232

               
               
               Conread position:222-490
               
               
               Cow position:chr22:23249527-23249792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):177, 92

               
               
               Conread position:222-494
               
               
               Cow position:chr22:617331-617054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:222-494
               
               
               Cow position:chr22:10684882-10685156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:222-494
               
               
               Cow position:chr22:11601246-11600970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:222-494
               
               
               Cow position:chr22:43398207-43397945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 18

               
               
               Conread position:223-397
               
               
               Cow position:chr22:47820649-47820474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:223-411
               
               
               Cow position:chr22:7067664-7067467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:223-414
               
               
               Cow position:chr22:5375606-5375413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:223-416
               
               
               Cow position:chr22:13726904-13727097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:223-417
               
               
               Cow position:chr22:14600124-14600317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 135

               
               
               Conread position:223-431
               
               
               Cow position:chr22:8327950-8327747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:223-442
               
               
               Cow position:chr22:34616522-34616296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 7

               
               
               Conread position:223-459
               
               
               Cow position:chr22:8883219-8882979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):200, 85

               
               
               Conread position:223-492
               
               
               Cow position:chr22:11370383-11370655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):196, 53

               
               
               Conread position:223-493
               
               
               Cow position:chr22:4075675-4075956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:223-493
               
               
               Cow position:chr22:7882756-7882486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):137, 7

               
               
               Conread position:223-493
               
               
               Cow position:chr22:22860702-22860976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):118, 122

               
               
               Conread position:223-494
               
               
               Cow position:chr22:285158-285427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):106, 91

               
               
               Conread position:223-494
               
               
               Cow position:chr22:27828588-27828316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:223-494
               
               
               Cow position:chr22:34619018-34618728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:224-430
               
               
               Cow position:chr22:4535114-4535325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:224-469
               
               
               Cow position:chr22:35029467-35029229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):192, 82

               
               
               Conread position:224-494
               
               
               Cow position:chr22:3250772-3251061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:224-494
               
               
               Cow position:chr22:39215405-39215684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:225-365
               
               
               Cow position:chr22:9994561-9994416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 5

               
               
               Conread position:225-391
               
               
               Cow position:chr22:42130383-42130217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:225-417
               
               
               Cow position:chr22:6106162-6106360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):5, 124

               
               
               Conread position:225-440
               
               
               Cow position:chr22:23277544-23277347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):195, 16

               
               
               Conread position:225-442
               
               
               Cow position:chr22:4736232-4736013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:225-443
               
               
               Cow position:chr22:9279227-9279016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:225-492
               
               
               Cow position:chr22:15567815-15568084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 83

               
               
               Conread position:225-494
               
               
               Cow position:chr22:7967903-7967634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:225-494
               
               
               Cow position:chr22:18196717-18196446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:225-494
               
               
               Cow position:chr22:20323438-20323719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:225-494
               
               
               Cow position:chr22:40387361-40387088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:225-496
               
               
               Cow position:chr22:26150908-26151182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 91

               
               
               Conread position:226-417
               
               
               Cow position:chr22:12777178-12777361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:226-417
               
               
               Cow position:chr22:35403917-35403724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:226-421
               
               
               Cow position:chr22:12637807-12637612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):115, 119

               
               
               Conread position:226-431
               
               
               Cow position:chr22:42635227-42635431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):189, 12

               
               
               Conread position:226-490
               
               
               Cow position:chr22:24916035-24915773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:227-314
               
               
               Cow position:chr22:30049217-30049305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:227-316
               
               
               Cow position:chr22:16823321-16823233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-349
               
               
               Cow position:chr22:32512402-32512524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-354
               
               
               Cow position:chr22:15382028-15381903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:227-360
               
               
               Cow position:chr22:17948164-17948298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:227-364
               
               
               Cow position:chr22:3061156-3061018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 98

               
               
               Conread position:227-371
               
               
               Cow position:chr22:1987177-1987034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:227-377
               
               
               Cow position:chr22:3960095-3960246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:227-379
               
               
               Cow position:chr22:26775709-26775554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr22:30293895-30293742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:227-385
               
               
               Cow position:chr22:28804117-28803966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-397
               
               
               Cow position:chr22:18403452-18403281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr22:21484136-21483975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr22:43130936-43131110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:227-406
               
               
               Cow position:chr22:21041950-21042119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):163, 32

               
               
               Conread position:227-407
               
               
               Cow position:chr22:4156875-4157056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 73

               
               
               Conread position:227-407
               
               
               Cow position:chr22:5712789-5712612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr22:6486169-6485988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:227-407
               
               
               Cow position:chr22:16916717-16916904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr22:2470033-2470224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-417
               
               
               Cow position:chr22:2704504-2704314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 130

               
               
               Conread position:227-417
               
               
               Cow position:chr22:41854107-41853921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 87

               
               
               Conread position:227-425
               
               
               Cow position:chr22:14690754-14690964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:227-427
               
               
               Cow position:chr22:37140618-37140409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-438
               
               
               Cow position:chr22:44410921-44410715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-440
               
               
               Cow position:chr22:6096811-6097025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:227-441
               
               
               Cow position:chr22:7361772-7361986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr22:243307-243103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):189, 81

               
               
               Conread position:227-442
               
               
               Cow position:chr22:4156611-4156827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr22:23265444-23265662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr22:26268053-26267840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr22:42230316-42230531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 137

               
               
               Conread position:227-443
               
               
               Cow position:chr22:2404085-2403871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:227-443
               
               
               Cow position:chr22:23980002-23980219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 118

               
               
               Conread position:227-455
               
               
               Cow position:chr22:26417485-26417259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):113, 82

               
               
               Conread position:227-468
               
               
               Cow position:chr22:18259421-18259189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):192, 80

               
               
               Conread position:227-475
               
               
               Cow position:chr22:13286653-13286403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 74

               
               
               Conread position:227-484
               
               
               Cow position:chr22:3282622-3282883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:227-486
               
               
               Cow position:chr22:10567514-10567768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-489
               
               
               Cow position:chr22:28569006-28568737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 130

               
               
               Conread position:227-490
               
               
               Cow position:chr22:8287385-8287127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):218, 86

               
               
               Conread position:227-490
               
               
               Cow position:chr22:25361681-25361422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):185, 14

               
               
               Conread position:227-492
               
               
               Cow position:chr22:1984062-1983786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-492
               
               
               Cow position:chr22:17152894-17152613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:227-492
               
               
               Cow position:chr22:40048765-40048487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):10, 178

               
               
               Conread position:227-493
               
               
               Cow position:chr22:1309533-1309795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:227-493
               
               
               Cow position:chr22:8733141-8733406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):134, 91

               
               
               Conread position:227-493
               
               
               Cow position:chr22:14142919-14143179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-493
               
               
               Cow position:chr22:27431479-27431761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 128

               
               
               Conread position:227-494
               
               
               Cow position:chr22:864325-864585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr22:890953-891210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:227-494
               
               
               Cow position:chr22:1289325-1289584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr22:1651695-1651425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr22:1849281-1849003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr22:1871310-1871027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:227-494
               
               
               Cow position:chr22:6622043-6622312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:227-494
               
               
               Cow position:chr22:8090331-8090596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):217, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr22:8138051-8138334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr22:12316012-12315744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:227-494
               
               
               Cow position:chr22:17852433-17852703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr22:25205760-25206034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 137

               
               
               Conread position:227-494
               
               
               Cow position:chr22:28371135-28370875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr22:33485420-33485669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:227-496
               
               
               Cow position:chr22:2100744-2101015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:228-316
               
               
               Cow position:chr22:9745390-9745478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-364
               
               
               Cow position:chr22:28634377-28634511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:228-377
               
               
               Cow position:chr22:15753708-15753561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:228-406
               
               
               Cow position:chr22:13930484-13930307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):129, 95

               
               
               Conread position:228-414
               
               
               Cow position:chr22:18933504-18933697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:228-422
               
               
               Cow position:chr22:1384277-1384093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:228-440
               
               
               Cow position:chr22:14641652-14641865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 140

               
               
               Conread position:228-442
               
               
               Cow position:chr22:28672337-28672135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:228-494
               
               
               Cow position:chr22:530374-530635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 76

               
               
               Conread position:228-494
               
               
               Cow position:chr22:644578-644833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:228-494
               
               
               Cow position:chr22:4132781-4132501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:228-494
               
               
               Cow position:chr22:18020827-18021097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:229-385
               
               
               Cow position:chr22:12586722-12586576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:229-414
               
               
               Cow position:chr22:39493630-39493817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr22:11813521-11813707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr22:17132204-17132394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:229-417
               
               
               Cow position:chr22:25811730-25811933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 143

               
               
               Conread position:229-427
               
               
               Cow position:chr22:12313622-12313430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):190, 77

               
               
               Conread position:229-434
               
               
               Cow position:chr22:19645404-19645595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):190, 91

               
               
               Conread position:229-434
               
               
               Cow position:chr22:27274486-27274702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:229-485
               
               
               Cow position:chr22:2075798-2076068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 188

               
               
               Conread position:229-494
               
               
               Cow position:chr22:10532697-10532441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 88

               
               
               Conread position:229-494
               
               
               Cow position:chr22:30699368-30699110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):190, 89

               
               
               Conread position:230-313
               
               
               Cow position:chr22:26706569-26706652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-350
               
               
               Cow position:chr22:29345789-29345672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:230-355
               
               
               Cow position:chr22:6204220-6204347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-364
               
               
               Cow position:chr22:31409442-31409306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-379
               
               
               Cow position:chr22:44018050-44018205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-382
               
               
               Cow position:chr22:11202054-11201915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:230-390
               
               
               Cow position:chr22:39907893-39908046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:230-391
               
               
               Cow position:chr22:35902219-35902377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):125, 51

               
               
               Conread position:230-392
               
               
               Cow position:chr22:964971-965134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:230-392
               
               
               Cow position:chr22:19306103-19305939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:230-395
               
               
               Cow position:chr22:12446529-12446679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-396
               
               
               Cow position:chr22:16274950-16275115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 69

               
               
               Conread position:230-397
               
               
               Cow position:chr22:35578574-35578741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:230-398
               
               
               Cow position:chr22:11836872-11837029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr22:3430397-3430226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:230-399
               
               
               Cow position:chr22:23758807-23758978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:230-399
               
               
               Cow position:chr22:26945369-26945526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr22:30176922-30176751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr22:45012560-45012722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr22:1552097-1551928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr22:30684926-30684756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr22:11039661-11039477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:230-414
               
               
               Cow position:chr22:1045986-1046173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr22:25312717-25312528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr22:39471953-39472139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:230-415
               
               
               Cow position:chr22:17746021-17745831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:230-416
               
               
               Cow position:chr22:39472159-39472347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr22:2633050-2632862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:230-417
               
               
               Cow position:chr22:10351167-10350976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:230-417
               
               
               Cow position:chr22:14091019-14091207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr22:16273843-16273656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-417
               
               
               Cow position:chr22:23630154-23630335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr22:29950083-29949893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:230-420
               
               
               Cow position:chr22:27275667-27275475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:230-422
               
               
               Cow position:chr22:8571122-8570918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:230-426
               
               
               Cow position:chr22:14141139-14141336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:230-438
               
               
               Cow position:chr22:6754061-6754273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-440
               
               
               Cow position:chr22:7086367-7086560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:230-440
               
               
               Cow position:chr22:16129340-16129134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:230-442
               
               
               Cow position:chr22:4310167-4310381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr22:4656844-4657053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):127, 87

               
               
               Conread position:230-442
               
               
               Cow position:chr22:9668781-9668566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:230-442
               
               
               Cow position:chr22:10682316-10682525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):185, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr22:12681597-12681810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:230-442
               
               
               Cow position:chr22:14488140-14487925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr22:15618809-15618594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:230-442
               
               
               Cow position:chr22:32661717-32661500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:230-443
               
               
               Cow position:chr22:1065309-1065094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-443
               
               
               Cow position:chr22:21415819-21415610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:230-443
               
               
               Cow position:chr22:26134019-26134235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 119

               
               
               Conread position:230-471
               
               
               Cow position:chr22:16797631-16797888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-480
               
               
               Cow position:chr22:47556058-47555797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:230-483
               
               
               Cow position:chr22:12749711-12749961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-485
               
               
               Cow position:chr22:1326620-1326356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:230-489
               
               
               Cow position:chr22:30999092-30998821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:230-490
               
               
               Cow position:chr22:1858524-1858269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:230-490
               
               
               Cow position:chr22:9372728-9372456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):82, 119

               
               
               Conread position:230-490
               
               
               Cow position:chr22:27577947-27577678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 232

               
               
               Conread position:230-490
               
               
               Cow position:chr22:42685084-42684844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:230-492
               
               
               Cow position:chr22:1659369-1659095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:230-492
               
               
               Cow position:chr22:12981523-12981789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 81

               
               
               Conread position:230-492
               
               
               Cow position:chr22:36589878-36590147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:230-493
               
               
               Cow position:chr22:6852379-6852650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:230-493
               
               
               Cow position:chr22:7165170-7164897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:230-494
               
               
               Cow position:chr22:534691-534432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:230-494
               
               
               Cow position:chr22:1106272-1105994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr22:2123492-2123227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):189, 81

               
               
               Conread position:230-494
               
               
               Cow position:chr22:4060746-4061014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr22:5616497-5616240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):189, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr22:8732362-8732631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr22:11613628-11613357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:230-494
               
               
               Cow position:chr22:11696993-11697264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr22:12678219-12678488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr22:13092991-13093261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:230-494
               
               
               Cow position:chr22:14178627-14178893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:230-494
               
               
               Cow position:chr22:14545720-14545985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 236

               
               
               Conread position:230-494
               
               
               Cow position:chr22:15914844-15915110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 115

               
               
               Conread position:230-494
               
               
               Cow position:chr22:17652634-17652365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr22:26056665-26056938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:230-494
               
               
               Cow position:chr22:29642314-29642045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr22:30269603-30269341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):189, 55

               
               
               Conread position:230-494
               
               
               Cow position:chr22:41898247-41898515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):158, 103

               
               
               Conread position:230-494
               
               
               Cow position:chr22:41982521-41982787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:230-496
               
               
               Cow position:chr22:2109428-2109693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 78

               
               
               Conread position:230-496
               
               
               Cow position:chr22:8357780-8357526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):210, 37

               
               
               Conread position:230-496
               
               
               Cow position:chr22:8447109-8446869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-496
               
               
               Cow position:chr22:15490857-15490585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):181, 206

               
               
               Conread position:231-342
               
               
               Cow position:chr22:19207533-19207642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:231-389
               
               
               Cow position:chr22:31870054-31870213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:231-391
               
               
               Cow position:chr22:24282761-24282923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:231-392
               
               
               Cow position:chr22:1645532-1645690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:231-414
               
               
               Cow position:chr22:38815001-38815180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-422
               
               
               Cow position:chr22:26140878-26140686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:231-429
               
               
               Cow position:chr22:29219701-29219901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:231-440
               
               
               Cow position:chr22:21905669-21905463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:231-440
               
               
               Cow position:chr22:40870031-40869825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 76

               
               
               Conread position:231-441
               
               
               Cow position:chr22:6372159-6372355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:231-442
               
               
               Cow position:chr22:5837462-5837260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:231-442
               
               
               Cow position:chr22:33948777-33948983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):183, 12

               
               
               Conread position:231-446
               
               
               Cow position:chr22:12188273-12188495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-446
               
               
               Cow position:chr22:12195359-12195582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-484
               
               
               Cow position:chr22:34895157-34894916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 30

               
               
               Conread position:231-488
               
               
               Cow position:chr22:2408928-2409184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:231-494
               
               
               Cow position:chr22:4044124-4043860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):188, 34

               
               
               Conread position:231-494
               
               
               Cow position:chr22:17949776-17950037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:231-494
               
               
               Cow position:chr22:22013950-22013682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:231-494
               
               
               Cow position:chr22:24066038-24066304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:231-494
               
               
               Cow position:chr22:40374807-40374540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):188, 88

               
               
               Conread position:231-494
               
               
               Cow position:chr22:41970957-41971228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):188, 12

               
               
               Conread position:231-496
               
               
               Cow position:chr22:6327573-6327841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:232-313
               
               
               Cow position:chr22:21235196-21235277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:73
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-320
               
               
               Cow position:chr22:20847076-20846988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:76
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-376
               
               
               Cow position:chr22:29546837-29546696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr22:2438775-2438943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:232-411
               
               
               Cow position:chr22:34668515-34668331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:232-417
               
               
               Cow position:chr22:45771825-45772008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:232-430
               
               
               Cow position:chr22:24134123-24134321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:232-431
               
               
               Cow position:chr22:1304355-1304553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:232-432
               
               
               Cow position:chr22:27580225-27580413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):183, 35

               
               
               Conread position:232-441
               
               
               Cow position:chr22:26233833-26233623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr22:16813995-16813788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-468
               
               
               Cow position:chr22:3470490-3470252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:232-492
               
               
               Cow position:chr22:13891775-13891502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):109, 85

               
               
               Conread position:232-492
               
               
               Cow position:chr22:31599632-31599372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):175, 144

               
               
               Conread position:232-492
               
               
               Cow position:chr22:42618195-42617932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 29

               
               
               Conread position:232-493
               
               
               Cow position:chr22:12157649-12157910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):187, 38

               
               
               Conread position:232-493
               
               
               Cow position:chr22:24903791-24903522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 74

               
               
               Conread position:232-494
               
               
               Cow position:chr22:1350027-1349755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:232-494
               
               
               Cow position:chr22:1653986-1654261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 116

               
               
               Conread position:232-494
               
               
               Cow position:chr22:3534131-3533872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:232-494
               
               
               Cow position:chr22:7154075-7153818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:232-494
               
               
               Cow position:chr22:8324448-8324175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 126

               
               
               Conread position:232-494
               
               
               Cow position:chr22:14378491-14378753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):17, 133

               
               
               Conread position:232-494
               
               
               Cow position:chr22:16094706-16094970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr22:16251365-16251633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):75, 175

               
               
               Conread position:232-494
               
               
               Cow position:chr22:27171069-27171323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):147, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr22:27730240-27729977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:232-494
               
               
               Cow position:chr22:30697348-30697092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 91

               
               
               Conread position:232-494
               
               
               Cow position:chr22:36432773-36433041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:232-494
               
               
               Cow position:chr22:37202048-37201786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):187, 80

               
               
               Conread position:232-494
               
               
               Cow position:chr22:44717920-44717644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-496
               
               
               Cow position:chr22:4054403-4054656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):184, 73

               
               
               Conread position:232-496
               
               
               Cow position:chr22:28639961-28640220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:233-387
               
               
               Cow position:chr22:21499645-21499800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:233-398
               
               
               Cow position:chr22:10594809-10594643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:233-398
               
               
               Cow position:chr22:26786557-26786396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr22:5778881-5779056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 159

               
               
               Conread position:233-407
               
               
               Cow position:chr22:11221374-11221210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:233-409
               
               
               Cow position:chr22:12741084-12741248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr22:13951461-13951279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:233-425
               
               
               Cow position:chr22:45683835-45684032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:233-440
               
               
               Cow position:chr22:43237202-43237416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:233-441
               
               
               Cow position:chr22:2876599-2876807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):186, 78

               
               
               Conread position:233-441
               
               
               Cow position:chr22:26017561-26017751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr22:10557470-10557270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr22:16806786-16806585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:233-442
               
               
               Cow position:chr22:21012585-21012375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:233-442
               
               
               Cow position:chr22:21890167-21890366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:233-442
               
               
               Cow position:chr22:26339963-26339744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:233-490
               
               
               Cow position:chr22:1501081-1500825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):167, 32

               
               
               Conread position:233-490
               
               
               Cow position:chr22:8540074-8539824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:233-490
               
               
               Cow position:chr22:8877448-8877206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:233-490
               
               
               Cow position:chr22:10338907-10339181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):74, 187

               
               
               Conread position:233-492
               
               
               Cow position:chr22:39507841-39508108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):183, 121

               
               
               Conread position:233-494
               
               
               Cow position:chr22:4373233-4372969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:233-494
               
               
               Cow position:chr22:6494374-6494102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 229

               
               
               Conread position:233-494
               
               
               Cow position:chr22:38438959-38439226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:233-494
               
               
               Cow position:chr22:43812242-43812492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):210, 72

               
               
               Conread position:233-494
               
               
               Cow position:chr22:44741269-44741019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 34

               
               
               Conread position:233-494
               
               
               Cow position:chr22:45796544-45796269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:233-496
               
               
               Cow position:chr22:39696496-39696217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:234-320
               
               
               Cow position:chr22:23176198-23176284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:76
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-379
               
               
               Cow position:chr22:44642444-44642303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:234-385
               
               
               Cow position:chr22:4083859-4084012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 129

               
               
               Conread position:234-389
               
               
               Cow position:chr22:24557326-24557482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:234-392
               
               
               Cow position:chr22:7082227-7082067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:234-399
               
               
               Cow position:chr22:10763976-10763817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:234-404
               
               
               Cow position:chr22:14432369-14432542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:234-404
               
               
               Cow position:chr22:16564343-16564177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):102, 72

               
               
               Conread position:234-406
               
               
               Cow position:chr22:35627548-35627375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:234-406
               
               
               Cow position:chr22:36762235-36762065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:234-407
               
               
               Cow position:chr22:36539461-36539626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 82

               
               
               Conread position:234-411
               
               
               Cow position:chr22:16346591-16346418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr22:10671645-10671821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:234-417
               
               
               Cow position:chr22:9735466-9735285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr22:16340052-16339871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr22:20035017-20034845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr22:22433243-22433058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:234-417
               
               
               Cow position:chr22:36209453-36209269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:234-417
               
               
               Cow position:chr22:43238696-43238878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:234-417
               
               
               Cow position:chr22:45788804-45788626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:234-423
               
               
               Cow position:chr22:10913856-10913675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:234-434
               
               
               Cow position:chr22:30923974-30923780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:234-441
               
               
               Cow position:chr22:32698961-32698755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:234-442
               
               
               Cow position:chr22:1714664-1714875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:234-442
               
               
               Cow position:chr22:3301138-3301349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr22:8535879-8535664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr22:26112565-26112356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 104

               
               
               Conread position:234-443
               
               
               Cow position:chr22:11352248-11352463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-444
               
               
               Cow position:chr22:5291052-5290838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:234-456
               
               
               Cow position:chr22:6149190-6149424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-486
               
               
               Cow position:chr22:37947919-37947663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:234-487
               
               
               Cow position:chr22:10416424-10416165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:234-490
               
               
               Cow position:chr22:15668285-15668536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):166, 82

               
               
               Conread position:234-491
               
               
               Cow position:chr22:46351196-46351449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:234-494
               
               
               Cow position:chr22:7832152-7832414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:234-494
               
               
               Cow position:chr22:23358349-23358083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:234-494
               
               
               Cow position:chr22:23735814-23736081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:234-494
               
               
               Cow position:chr22:25254372-25254107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:234-494
               
               
               Cow position:chr22:28340384-28340124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 111

               
               
               Conread position:234-494
               
               
               Cow position:chr22:33399291-33399552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):185, 84

               
               
               Conread position:235-375
               
               
               Cow position:chr22:672068-672211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:235-396
               
               
               Cow position:chr22:43730479-43730322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr22:18442548-18442713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-397
               
               
               Cow position:chr22:27681921-27681757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:235-397
               
               
               Cow position:chr22:37702171-37702014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):126, 39

               
               
               Conread position:235-404
               
               
               Cow position:chr22:1105431-1105595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:235-407
               
               
               Cow position:chr22:1728429-1728257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:235-408
               
               
               Cow position:chr22:9326038-9325862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:235-409
               
               
               Cow position:chr22:15695536-15695701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr22:1959435-1959255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr22:1991800-1991615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:235-417
               
               
               Cow position:chr22:2036205-2036023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:235-417
               
               
               Cow position:chr22:23209764-23209580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr22:43965900-43965716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-424
               
               
               Cow position:chr22:47562908-47562714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-440
               
               
               Cow position:chr22:19413837-19414045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:235-440
               
               
               Cow position:chr22:25236931-25237149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):5, 133

               
               
               Conread position:235-442
               
               
               Cow position:chr22:16840597-16840807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-442
               
               
               Cow position:chr22:22613299-22613096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:235-442
               
               
               Cow position:chr22:23372662-23372874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:235-442
               
               
               Cow position:chr22:35215748-35215538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-444
               
               
               Cow position:chr22:5595611-5595821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):78, 164

               
               
               Conread position:235-444
               
               
               Cow position:chr22:7140845-7140632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:235-487
               
               
               Cow position:chr22:38978039-38977780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 59

               
               
               Conread position:235-490
               
               
               Cow position:chr22:27819194-27818938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):180, 91

               
               
               Conread position:235-490
               
               
               Cow position:chr22:33447881-33448145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):81, 238

               
               
               Conread position:235-492
               
               
               Cow position:chr22:25742769-25743017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:235-494
               
               
               Cow position:chr22:1563044-1563320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:235-494
               
               
               Cow position:chr22:4560612-4560875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:235-494
               
               
               Cow position:chr22:15950193-15950451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):184, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr22:16291736-16291989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:235-494
               
               
               Cow position:chr22:16541452-16541720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 227

               
               
               Conread position:235-494
               
               
               Cow position:chr22:17359670-17359410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 101

               
               
               Conread position:235-494
               
               
               Cow position:chr22:18193664-18193393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:235-494
               
               
               Cow position:chr22:25809084-25809340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr22:28071754-28071489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):184, 8

               
               
               Conread position:235-494
               
               
               Cow position:chr22:28357224-28356971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr22:32326996-32326735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:235-494
               
               
               Cow position:chr22:43131357-43131627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:235-496
               
               
               Cow position:chr22:18545483-18545217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:236-490
               
               
               Cow position:chr22:39602481-39602216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:238-333
               
               
               Cow position:chr22:7172355-7172260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:238-397
               
               
               Cow position:chr22:23675779-23675932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:238-399
               
               
               Cow position:chr22:33565902-33566060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-406
               
               
               Cow position:chr22:44384298-44384476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:238-411
               
               
               Cow position:chr22:45104071-45104249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:238-414
               
               
               Cow position:chr22:14644027-14643855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr22:3540926-3541102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:238-424
               
               
               Cow position:chr22:12389296-12389110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:238-428
               
               
               Cow position:chr22:28493087-28493275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:238-430
               
               
               Cow position:chr22:44684669-44684489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):181, 26

               
               
               Conread position:238-441
               
               
               Cow position:chr22:1523416-1523209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:238-442
               
               
               Cow position:chr22:16845199-16845414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:238-459
               
               
               Cow position:chr22:1710728-1710502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 65

               
               
               Conread position:238-465
               
               
               Cow position:chr22:16724494-16724718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:238-492
               
               
               Cow position:chr22:31510169-31510434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:238-493
               
               
               Cow position:chr22:19827667-19827931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:238-493
               
               
               Cow position:chr22:45808023-45807773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):181, 29

               
               
               Conread position:238-494
               
               
               Cow position:chr22:899032-898775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):181, 84

               
               
               Conread position:239-399
               
               
               Cow position:chr22:4632462-4632301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:239-414
               
               
               Cow position:chr22:1830236-1830067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:239-429
               
               
               Cow position:chr22:7518747-7518558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:239-442
               
               
               Cow position:chr22:18966968-18967168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:239-494
               
               
               Cow position:chr22:10609551-10609286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:239-494
               
               
               Cow position:chr22:10631581-10631316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:240-370
               
               
               Cow position:chr22:22972556-22972683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 77

               
               
               Conread position:240-389
               
               
               Cow position:chr22:45019457-45019602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:240-390
               
               
               Cow position:chr22:28690569-28690420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:240-391
               
               
               Cow position:chr22:29641457-29641610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:240-397
               
               
               Cow position:chr22:14236712-14236859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:240-399
               
               
               Cow position:chr22:9075603-9075441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:240-399
               
               
               Cow position:chr22:13866860-13866699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:240-406
               
               
               Cow position:chr22:1074459-1074291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:240-406
               
               
               Cow position:chr22:3257475-3257634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr22:11790178-11790010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:240-406
               
               
               Cow position:chr22:24047428-24047584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr22:1776255-1776085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr22:2201926-2201763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr22:19376866-19376692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr22:3388920-3388762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr22:33031001-33030818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr22:20472181-20472343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr22:30615923-30615749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:240-417
               
               
               Cow position:chr22:1588487-1588310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 121

               
               
               Conread position:240-417
               
               
               Cow position:chr22:8412722-8412544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr22:14601983-14602156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr22:27401925-27401753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:240-422
               
               
               Cow position:chr22:33373435-33373250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:240-426
               
               
               Cow position:chr22:6203143-6202954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:240-429
               
               
               Cow position:chr22:7414856-7415049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 133

               
               
               Conread position:240-430
               
               
               Cow position:chr22:3730481-3730671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:240-431
               
               
               Cow position:chr22:26189064-26188871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:240-432
               
               
               Cow position:chr22:2184524-2184712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-439
               
               
               Cow position:chr22:4628754-4628546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-440
               
               
               Cow position:chr22:11189222-11189023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:240-442
               
               
               Cow position:chr22:6176090-6176295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr22:12902664-12902857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr22:14676880-14676675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr22:17198330-17198128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:240-442
               
               
               Cow position:chr22:24542556-24542352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):111, 81

               
               
               Conread position:240-442
               
               
               Cow position:chr22:30818401-30818203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-442
               
               
               Cow position:chr22:38115375-38115183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:240-442
               
               
               Cow position:chr22:39446486-39446282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:240-444
               
               
               Cow position:chr22:6360001-6360195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):179, 60

               
               
               Conread position:240-447
               
               
               Cow position:chr22:24071465-24071662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-469
               
               
               Cow position:chr22:5016682-5016458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:240-469
               
               
               Cow position:chr22:10162159-10161932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:240-469
               
               
               Cow position:chr22:24583880-24584098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 74

               
               
               Conread position:240-473
               
               
               Cow position:chr22:7496915-7497157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:240-481
               
               
               Cow position:chr22:6720889-6721135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:240-484
               
               
               Cow position:chr22:4563548-4563303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:240-487
               
               
               Cow position:chr22:34441441-34441698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:240-488
               
               
               Cow position:chr22:6289307-6289558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-490
               
               
               Cow position:chr22:12829417-12829675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:240-492
               
               
               Cow position:chr22:32480275-32480547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 245

               
               
               Conread position:240-493
               
               
               Cow position:chr22:10295220-10294970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):176, 72

               
               
               Conread position:240-493
               
               
               Cow position:chr22:25690086-25690348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr22:6215365-6215627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr22:6709598-6709848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:240-494
               
               
               Cow position:chr22:8418656-8418399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:240-494
               
               
               Cow position:chr22:9127590-9127338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:240-494
               
               
               Cow position:chr22:10122560-10122309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):179, 64

               
               
               Conread position:240-494
               
               
               Cow position:chr22:10936657-10936906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr22:11131061-11130800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr22:12892169-12892438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:240-494
               
               
               Cow position:chr22:12929086-12929342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:240-494
               
               
               Cow position:chr22:16533264-16533008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr22:18838442-18838182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr22:23115115-23115378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:240-494
               
               
               Cow position:chr22:25221711-25221967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):160, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr22:32892888-32892625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr22:33522685-33522934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-494
               
               
               Cow position:chr22:34726867-34726606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr22:36194023-36193779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:240-495
               
               
               Cow position:chr22:10303207-10302947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:241-397
               
               
               Cow position:chr22:16639499-16639340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 87

               
               
               Conread position:241-397
               
               
               Cow position:chr22:23762661-23762815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):112, 73

               
               
               Conread position:241-399
               
               
               Cow position:chr22:27591392-27591228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:241-414
               
               
               Cow position:chr22:12673141-12673316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:241-417
               
               
               Cow position:chr22:41025949-41025772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:241-442
               
               
               Cow position:chr22:4164170-4163969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr22:16235310-16235515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 84

               
               
               Conread position:241-442
               
               
               Cow position:chr22:25732772-25732977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:241-480
               
               
               Cow position:chr22:9983634-9983870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 122

               
               
               Conread position:241-480
               
               
               Cow position:chr22:30607050-30606808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 186

               
               
               Conread position:241-489
               
               
               Cow position:chr22:19459853-19460113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:241-490
               
               
               Cow position:chr22:11766857-11767112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:241-494
               
               
               Cow position:chr22:59804-59543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:241-494
               
               
               Cow position:chr22:15050368-15050112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:241-494
               
               
               Cow position:chr22:21568182-21567929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:241-494
               
               
               Cow position:chr22:26166427-26166688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:241-496
               
               
               Cow position:chr22:14245247-14245514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 135

               
               
               Conread position:242-383
               
               
               Cow position:chr22:10966326-10966185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr22:4583751-4583552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:242-466
               
               
               Cow position:chr22:33985617-33985837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:242-488
               
               
               Cow position:chr22:4357273-4357034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:242-490
               
               
               Cow position:chr22:25247099-25246851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:242-494
               
               
               Cow position:chr22:21527099-21526851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:243-425
               
               
               Cow position:chr22:2436434-2436611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):178, 71

               
               
               Conread position:244-353
               
               
               Cow position:chr22:30964430-30964322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:244-397
               
               
               Cow position:chr22:30583845-30583690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:244-399
               
               
               Cow position:chr22:18145723-18145570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:244-410
               
               
               Cow position:chr22:29135143-29134981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:244-442
               
               
               Cow position:chr22:37029417-37029614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:244-494
               
               
               Cow position:chr22:27267742-27267472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 177

               
               
               Conread position:245-399
               
               
               Cow position:chr22:41636464-41636614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:245-409
               
               
               Cow position:chr22:15006925-15007087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:245-414
               
               
               Cow position:chr22:3937249-3937079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 101

               
               
               Conread position:246-397
               
               
               Cow position:chr22:15737416-15737270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:246-417
               
               
               Cow position:chr22:26804008-26803834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:246-494
               
               
               Cow position:chr22:13669981-13670239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:247-406
               
               
               Cow position:chr22:35533044-35533209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-413
               
               
               Cow position:chr22:11497680-11497513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:247-414
               
               
               Cow position:chr22:21601339-21601507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:247-490
               
               
               Cow position:chr22:13719850-13720086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:247-493
               
               
               Cow position:chr22:40789742-40789498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):172, 20

               
               
               Conread position:248-390
               
               
               Cow position:chr22:46545521-46545665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:248-409
               
               
               Cow position:chr22:755669-755823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:248-409
               
               
               Cow position:chr22:9154046-9153887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:248-411
               
               
               Cow position:chr22:12853919-12854083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:248-424
               
               
               Cow position:chr22:6793696-6793866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):171, 63

               
               
               Conread position:248-427
               
               
               Cow position:chr22:20166677-20166858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:248-442
               
               
               Cow position:chr22:2644117-2643920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 189

               
               
               Conread position:248-442
               
               
               Cow position:chr22:40120689-40120886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:248-494
               
               
               Cow position:chr22:9597401-9597648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:248-494
               
               
               Cow position:chr22:17126631-17126389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 64

               
               
               Conread position:248-494
               
               
               Cow position:chr22:27066567-27066324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 162

               
               
               Conread position:249-399
               
               
               Cow position:chr22:8480292-8480137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 105

               
               
               Conread position:249-411
               
               
               Cow position:chr22:8331183-8331020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:249-442
               
               
               Cow position:chr22:32514479-32514281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:249-492
               
               
               Cow position:chr22:10315279-10315008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:249-494
               
               
               Cow position:chr22:1026086-1025819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:250-397
               
               
               Cow position:chr22:26931043-26930898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr22:28146864-28146692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:250-440
               
               
               Cow position:chr22:30642951-30643142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:250-452
               
               
               Cow position:chr22:43526142-43525939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:250-494
               
               
               Cow position:chr22:28057860-28058120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:250-494
               
               
               Cow position:chr22:31646665-31646421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):169, 31

               
               
               Conread position:251-385
               
               
               Cow position:chr22:18441265-18441129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:251-493
               
               
               Cow position:chr22:4315817-4315561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:252-409
               
               
               Cow position:chr22:16655560-16655714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:253-391
               
               
               Cow position:chr22:6127999-6128135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:253-496
               
               
               Cow position:chr22:45513345-45513588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 145

               
               
               Conread position:255-417
               
               
               Cow position:chr22:14365775-14365942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:257-492
               
               
               Cow position:chr22:29289974-29290207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 35

               
               
               Conread position:258-417
               
               
               Cow position:chr22:7512793-7512631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:259-431
               
               
               Cow position:chr22:23780399-23780567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):145, 49

               
               
               Conread position:259-479
               
               
               Cow position:chr22:17119987-17119763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:260-442
               
               
               Cow position:chr22:3240083-3239902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:260-490
               
               
               Cow position:chr22:14006342-14006118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):159, 46

               
               
               Conread position:261-494
               
               
               Cow position:chr22:15024938-15025177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 53

               
               
               Conread position:264-417
               
               
               Cow position:chr22:48155589-48155442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:265-411
               
               
               Cow position:chr22:10402781-10402924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:265-494
               
               
               Cow position:chr22:27907709-27907942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:266-494
               
               
               Cow position:chr22:590503-590269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:268-496
               
               
               Cow position:chr22:4119399-4119633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:269-494
               
               
               Cow position:chr22:17224505-17224737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:272-494
               
               
               Cow position:chr22:1067754-1067981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 6

               
               
               Conread position:273-496
               
               
               Cow position:chr22:9171566-9171335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):146, 50

               
               
               Conread position:274-390
               
               
               Cow position:chr22:1320653-1320537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-442
               
               
               Cow position:chr22:8710214-8710383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:274-494
               
               
               Cow position:chr22:29185449-29185676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:283-494
               
               
               Cow position:chr22:25846172-25846389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:284-492
               
               
               Cow position:chr22:15039036-15039250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:289-489
               
               
               Cow position:chr22:3317262-3317057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:290-490
               
               
               Cow position:chr22:877654-877450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:295-494
               
               
               Cow position:chr22:4017609-4017409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:298-496
               
               
               Cow position:chr22:17294802-17295003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:299-494
               
               
               Cow position:chr22:1591155-1590955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:301-438
               
               
               Cow position:chr22:6326576-6326438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:301-442
               
               
               Cow position:chr22:17814363-17814223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:302-417
               
               
               Cow position:chr22:28120853-28120740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:302-417
               
               
               Cow position:chr22:31309015-31308900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-475
               
               
               Cow position:chr22:23036294-23036120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:302-493
               
               
               Cow position:chr22:26706680-26706875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr22:846038-845833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:302-494
               
               
               Cow position:chr22:3950383-3950184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):120, 92

               
               
               Conread position:302-494
               
               
               Cow position:chr22:13878308-13878116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 97

               
               
               Conread position:302-494
               
               
               Cow position:chr22:16044285-16044487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 59

               
               
               Conread position:302-494
               
               
               Cow position:chr22:17764507-17764312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr22:21530228-21530422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 154

               
               
               Conread position:302-494
               
               
               Cow position:chr22:28665415-28665218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr22:34104541-34104743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr22:43119598-43119796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:303-442
               
               
               Cow position:chr22:23176312-23176451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:303-494
               
               
               Cow position:chr22:6936386-6936194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:303-494
               
               
               Cow position:chr22:21295595-21295794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):116, 94

               
               
               Conread position:304-494
               
               
               Cow position:chr22:10553556-10553753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:304-494
               
               
               Cow position:chr22:25387456-25387254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:305-439
               
               
               Cow position:chr22:10286098-10285961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:305-443
               
               
               Cow position:chr22:10324007-10323869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:305-488
               
               
               Cow position:chr22:23440168-23440358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):138, 110

               
               
               Conread position:307-487
               
               
               Cow position:chr22:19173828-19173633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:309-442
               
               
               Cow position:chr22:30049442-30049576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:310-414
               
               
               Cow position:chr22:29325529-29325633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:312-441
               
               
               Cow position:chr22:22606346-22606216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:317-494
               
               
               Cow position:chr22:4011297-4011116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:319-442
               
               
               Cow position:chr22:14381773-14381649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:319-492
               
               
               Cow position:chr22:21502858-21502676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:320-494
               
               
               Cow position:chr22:4137538-4137719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:324-490
               
               
               Cow position:chr22:2216918-2216757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:324-494
               
               
               Cow position:chr22:12341305-12341127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:324-494
               
               
               Cow position:chr22:26141383-26141208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:327-496
               
               
               Cow position:chr22:28704290-28704114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:329-492
               
               
               Cow position:chr22:13300515-13300345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr22:4645875-4645705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:331-472
               
               
               Cow position:chr22:1838410-1838265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:331-491
               
               
               Cow position:chr22:12686584-12686744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:332-494
               
               
               Cow position:chr22:40720193-40720358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:191-442
               
               
               Cow position:chr23:7710028-7709786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:198-494
               
               
               Cow position:chr23:21446355-21446057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:198-494
               
               
               Cow position:chr23:40778504-40778204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:204-442
               
               
               Cow position:chr23:41348392-41348628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:208-494
               
               
               Cow position:chr23:33629152-33628863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):137, 59

               
               
               Conread position:212-424
               
               
               Cow position:chr23:3979533-3979749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:216-336
               
               
               Cow position:chr23:532890-533007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:217-399
               
               
               Cow position:chr23:22654477-22654647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:217-417
               
               
               Cow position:chr23:22826225-22826419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:218-400
               
               
               Cow position:chr23:19739341-19739527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:219-406
               
               
               Cow position:chr23:20725472-20725655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:219-411
               
               
               Cow position:chr23:16647544-16647350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:219-483
               
               
               Cow position:chr23:1426763-1427036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 141

               
               
               Conread position:220-353
               
               
               Cow position:chr23:1735184-1735056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:220-375
               
               
               Cow position:chr23:22529236-22529383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:220-379
               
               
               Cow position:chr23:1636487-1636327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:220-380
               
               
               Cow position:chr23:2511365-2511204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):6, 105

               
               
               Conread position:221-387
               
               
               Cow position:chr23:26975250-26975413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:221-397
               
               
               Cow position:chr23:13380924-13380751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:221-493
               
               
               Cow position:chr23:306742-306457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-417
               
               
               Cow position:chr23:25884182-25883988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:222-442
               
               
               Cow position:chr23:16689849-16690072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:222-496
               
               
               Cow position:chr23:5237223-5237495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):197, 42

               
               
               Conread position:223-372
               
               
               Cow position:chr23:24689504-24689352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:223-390
               
               
               Cow position:chr23:16968257-16968093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:223-390
               
               
               Cow position:chr23:23089145-23088982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):114, 103

               
               
               Conread position:223-397
               
               
               Cow position:chr23:2047169-2046989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:223-410
               
               
               Cow position:chr23:18822217-18822404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 180

               
               
               Conread position:223-411
               
               
               Cow position:chr23:21638588-21638404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:223-411
               
               
               Cow position:chr23:39864875-39864680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:223-417
               
               
               Cow position:chr23:40951219-40951016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:223-492
               
               
               Cow position:chr23:2501642-2501915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):196, 94

               
               
               Conread position:223-494
               
               
               Cow position:chr23:1438493-1438230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:224-321
               
               
               Cow position:chr23:353342-353438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:224-417
               
               
               Cow position:chr23:23897410-23897214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:224-441
               
               
               Cow position:chr23:250016-250230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:224-490
               
               
               Cow position:chr23:23409929-23409681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:224-494
               
               
               Cow position:chr23:1883607-1883330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):115, 84

               
               
               Conread position:225-392
               
               
               Cow position:chr23:27526799-27526631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:225-399
               
               
               Cow position:chr23:18679360-18679171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:225-406
               
               
               Cow position:chr23:9387817-9387995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:225-443
               
               
               Cow position:chr23:5395270-5395481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):194, 78

               
               
               Conread position:225-490
               
               
               Cow position:chr23:20557629-20557904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:225-492
               
               
               Cow position:chr23:16848185-16847906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:225-492
               
               
               Cow position:chr23:40275341-40275605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:226-397
               
               
               Cow position:chr23:9726328-9726500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:226-443
               
               
               Cow position:chr23:4877582-4877355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:227-332
               
               
               Cow position:chr23:18354886-18354781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-351
               
               
               Cow position:chr23:19822257-19822381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:227-382
               
               
               Cow position:chr23:23034229-23034382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr23:39109146-39108979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:227-393
               
               
               Cow position:chr23:3917659-3917819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-398
               
               
               Cow position:chr23:164965-164800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:227-399
               
               
               Cow position:chr23:85299-85133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr23:25933360-25933197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:227-399
               
               
               Cow position:chr23:29972610-29972427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr23:40965768-40965942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:227-404
               
               
               Cow position:chr23:11053687-11053859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:227-412
               
               
               Cow position:chr23:25087194-25087376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:227-414
               
               
               Cow position:chr23:17462803-17462614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 136

               
               
               Conread position:227-414
               
               
               Cow position:chr23:23104279-23104462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr23:665569-665764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:227-417
               
               
               Cow position:chr23:809718-809527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr23:1277054-1276875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr23:4003860-4003668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:227-417
               
               
               Cow position:chr23:38267195-38267379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:227-422
               
               
               Cow position:chr23:20596378-20596578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 139

               
               
               Conread position:227-426
               
               
               Cow position:chr23:6179337-6179534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-435
               
               
               Cow position:chr23:19179158-19179373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:227-437
               
               
               Cow position:chr23:14653172-14653385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:227-440
               
               
               Cow position:chr23:22668301-22668507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):192, 84

               
               
               Conread position:227-441
               
               
               Cow position:chr23:17597633-17597423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-441
               
               
               Cow position:chr23:25968626-25968421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr23:1194283-1194496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:227-442
               
               
               Cow position:chr23:4844827-4844602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:227-442
               
               
               Cow position:chr23:18823196-18822985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:227-442
               
               
               Cow position:chr23:24704494-24704280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):142, 41

               
               
               Conread position:227-458
               
               
               Cow position:chr23:17484646-17484869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:227-462
               
               
               Cow position:chr23:22238609-22238844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:227-490
               
               
               Cow position:chr23:13555222-13555496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 154

               
               
               Conread position:227-490
               
               
               Cow position:chr23:40790176-40789918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-492
               
               
               Cow position:chr23:5732746-5732489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-492
               
               
               Cow position:chr23:40391685-40391414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-493
               
               
               Cow position:chr23:16744754-16744498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:227-494
               
               
               Cow position:chr23:343966-344237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 170

               
               
               Conread position:227-494
               
               
               Cow position:chr23:1884962-1885234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):192, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr23:4727001-4726725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):157, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr23:7845499-7845230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr23:13520655-13520388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:227-494
               
               
               Cow position:chr23:19269257-19268986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 62

               
               
               Conread position:227-494
               
               
               Cow position:chr23:25675486-25675762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:227-494
               
               
               Cow position:chr23:33601322-33601590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:228-409
               
               
               Cow position:chr23:5215702-5215887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 142

               
               
               Conread position:228-409
               
               
               Cow position:chr23:35718525-35718342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:228-414
               
               
               Cow position:chr23:2395389-2395573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-426
               
               
               Cow position:chr23:39248190-39248376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):191, 39

               
               
               Conread position:228-457
               
               
               Cow position:chr23:1725552-1725326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 130

               
               
               Conread position:228-460
               
               
               Cow position:chr23:4578824-4579059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 136

               
               
               Conread position:228-492
               
               
               Cow position:chr23:20744369-20744654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:228-494
               
               
               Cow position:chr23:16582699-16582971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:228-494
               
               
               Cow position:chr23:24966251-24966527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:228-494
               
               
               Cow position:chr23:31494079-31493801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:229-361
               
               
               Cow position:chr23:3522952-3522813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:229-404
               
               
               Cow position:chr23:22573697-22573874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:229-442
               
               
               Cow position:chr23:3835372-3835599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 182

               
               
               Conread position:229-442
               
               
               Cow position:chr23:5799262-5799465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):190, 51

               
               
               Conread position:229-442
               
               
               Cow position:chr23:15743300-15743087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:229-442
               
               
               Cow position:chr23:20093033-20093246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:229-442
               
               
               Cow position:chr23:35656618-35656407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 164

               
               
               Conread position:229-494
               
               
               Cow position:chr23:20248484-20248758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:230-316
               
               
               Cow position:chr23:20604479-20604565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-329
               
               
               Cow position:chr23:5707311-5707212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-364
               
               
               Cow position:chr23:1648047-1647914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 108

               
               
               Conread position:230-385
               
               
               Cow position:chr23:4465755-4465913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:230-390
               
               
               Cow position:chr23:3890364-3890525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-399
               
               
               Cow position:chr23:2110986-2110822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-399
               
               
               Cow position:chr23:18387379-18387551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr23:35512049-35512225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr23:39056966-39056796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:230-408
               
               
               Cow position:chr23:33702183-33702364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 166

               
               
               Conread position:230-409
               
               
               Cow position:chr23:30617268-30617449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr23:1510720-1510902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr23:4416077-4416263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:230-414
               
               
               Cow position:chr23:10676062-10675876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr23:10815749-10815930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:230-414
               
               
               Cow position:chr23:13553495-13553677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:230-415
               
               
               Cow position:chr23:28580374-28580563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr23:2471213-2471025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:230-417
               
               
               Cow position:chr23:7856970-7856781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr23:26604464-26604273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr23:36457947-36458135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 115

               
               
               Conread position:230-427
               
               
               Cow position:chr23:16877208-16877017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:230-428
               
               
               Cow position:chr23:17392815-17392632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):189, 80

               
               
               Conread position:230-442
               
               
               Cow position:chr23:187387-187174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):131, 127

               
               
               Conread position:230-442
               
               
               Cow position:chr23:4995888-4996099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 73

               
               
               Conread position:230-442
               
               
               Cow position:chr23:14394876-14394663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:230-442
               
               
               Cow position:chr23:16447486-16447691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:230-442
               
               
               Cow position:chr23:22414101-22414304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr23:32621496-32621279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr23:37660876-37660668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-442
               
               
               Cow position:chr23:39813710-39813499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:230-446
               
               
               Cow position:chr23:1759456-1759238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-450
               
               
               Cow position:chr23:32479809-32480028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:230-461
               
               
               Cow position:chr23:23197534-23197325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):185, 44

               
               
               Conread position:230-463
               
               
               Cow position:chr23:39267993-39267760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 100

               
               
               Conread position:230-468
               
               
               Cow position:chr23:25990230-25990475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:230-476
               
               
               Cow position:chr23:40095391-40095144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:230-489
               
               
               Cow position:chr23:1656102-1655837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:230-490
               
               
               Cow position:chr23:35239559-35239289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:230-493
               
               
               Cow position:chr23:307666-307390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr23:18384927-18384660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:230-493
               
               
               Cow position:chr23:26794705-26794974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:230-494
               
               
               Cow position:chr23:1863668-1863409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:230-494
               
               
               Cow position:chr23:3244707-3244978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:230-494
               
               
               Cow position:chr23:3247797-3247522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:230-494
               
               
               Cow position:chr23:4327478-4327752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 229

               
               
               Conread position:230-494
               
               
               Cow position:chr23:5426645-5426368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 246

               
               
               Conread position:230-494
               
               
               Cow position:chr23:5436432-5436707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr23:10377145-10377407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 217

               
               
               Conread position:230-494
               
               
               Cow position:chr23:10853255-10852989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:230-494
               
               
               Cow position:chr23:14524205-14523921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr23:16880962-16881225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):189, 79

               
               
               Conread position:230-494
               
               
               Cow position:chr23:19173148-19173416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 178

               
               
               Conread position:230-494
               
               
               Cow position:chr23:26841630-26841363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:230-494
               
               
               Cow position:chr23:27859999-27859734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):80, 120

               
               
               Conread position:230-494
               
               
               Cow position:chr23:32167239-32166957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:230-494
               
               
               Cow position:chr23:40995371-40995109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):184, 37

               
               
               Conread position:230-496
               
               
               Cow position:chr23:1614449-1614723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:231-384
               
               
               Cow position:chr23:4505019-4504866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:231-397
               
               
               Cow position:chr23:41478083-41477920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr23:40377222-40377385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:231-420
               
               
               Cow position:chr23:38992889-38993071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-423
               
               
               Cow position:chr23:4979076-4979266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:231-430
               
               
               Cow position:chr23:1480849-1480647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr23:27849200-27848992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 32

               
               
               Conread position:231-464
               
               
               Cow position:chr23:1745878-1745635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 185

               
               
               Conread position:231-466
               
               
               Cow position:chr23:11314809-11315061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 233

               
               
               Conread position:231-494
               
               
               Cow position:chr23:534433-534165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr23:1585192-1585450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 89

               
               
               Conread position:231-494
               
               
               Cow position:chr23:3394287-3394558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:231-494
               
               
               Cow position:chr23:3431295-3431006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr23:3967347-3967621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:231-494
               
               
               Cow position:chr23:20539586-20539320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:231-494
               
               
               Cow position:chr23:40637471-40637193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:232-329
               
               
               Cow position:chr23:23724384-23724481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-345
               
               
               Cow position:chr23:23103120-23103232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:232-360
               
               
               Cow position:chr23:18204610-18204485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-382
               
               
               Cow position:chr23:16479921-16480065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:232-382
               
               
               Cow position:chr23:19190429-19190274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-392
               
               
               Cow position:chr23:11369426-11369273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-395
               
               
               Cow position:chr23:4521675-4521841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr23:37948893-37948726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:232-407
               
               
               Cow position:chr23:5642155-5642329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:232-414
               
               
               Cow position:chr23:1429627-1429801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr23:4282003-4282191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:232-414
               
               
               Cow position:chr23:22530231-22530414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr23:17012536-17012717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr23:18417282-18417114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:232-430
               
               
               Cow position:chr23:40500891-40501090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 76

               
               
               Conread position:232-431
               
               
               Cow position:chr23:7155495-7155686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:232-435
               
               
               Cow position:chr23:38854382-38854587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:232-440
               
               
               Cow position:chr23:4090627-4090425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 151

               
               
               Conread position:232-442
               
               
               Cow position:chr23:1653209-1652997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:232-442
               
               
               Cow position:chr23:1760627-1760850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr23:8698631-8698416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr23:10416222-10416425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):187, 72

               
               
               Conread position:232-442
               
               
               Cow position:chr23:21423972-21423763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-442
               
               
               Cow position:chr23:30311724-30311936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):153, 82

               
               
               Conread position:232-442
               
               
               Cow position:chr23:37066062-37065845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-461
               
               
               Cow position:chr23:3814055-3814302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 232

               
               
               Conread position:232-490
               
               
               Cow position:chr23:16780350-16780608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:232-491
               
               
               Cow position:chr23:35930154-35929897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:232-494
               
               
               Cow position:chr23:1981467-1981717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-494
               
               
               Cow position:chr23:2281982-2282237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):187, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr23:3223236-3223499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 163

               
               
               Conread position:232-494
               
               
               Cow position:chr23:4646713-4646448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:232-494
               
               
               Cow position:chr23:18286389-18286129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):118, 80

               
               
               Conread position:232-494
               
               
               Cow position:chr23:26949397-26949137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):187, 68

               
               
               Conread position:232-494
               
               
               Cow position:chr23:39442938-39442675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:232-496
               
               
               Cow position:chr23:3408680-3408979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-345
               
               
               Cow position:chr23:3214476-3214587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:233-392
               
               
               Cow position:chr23:15099721-15099883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:233-399
               
               
               Cow position:chr23:1061955-1061792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:233-399
               
               
               Cow position:chr23:5698991-5699148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:233-404
               
               
               Cow position:chr23:4042654-4042490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-410
               
               
               Cow position:chr23:1490559-1490390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:233-411
               
               
               Cow position:chr23:1954479-1954307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr23:9876794-9876974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):94, 68

               
               
               Conread position:233-422
               
               
               Cow position:chr23:769336-769524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:233-430
               
               
               Cow position:chr23:15056371-15056562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-431
               
               
               Cow position:chr23:9131759-9131954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):184, 53

               
               
               Conread position:233-442
               
               
               Cow position:chr23:3234573-3234786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:233-443
               
               
               Cow position:chr23:28529746-28529953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):77, 176

               
               
               Conread position:233-468
               
               
               Cow position:chr23:18691969-18692206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):103, 81

               
               
               Conread position:233-493
               
               
               Cow position:chr23:1533105-1532844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:233-493
               
               
               Cow position:chr23:38454958-38455243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr23:385103-385375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 145

               
               
               Conread position:233-494
               
               
               Cow position:chr23:6244398-6244652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):186, 19

               
               
               Conread position:233-494
               
               
               Cow position:chr23:34611291-34611537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:234-364
               
               
               Cow position:chr23:27307952-27307820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:234-379
               
               
               Cow position:chr23:2563868-2563722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:234-379
               
               
               Cow position:chr23:22651603-22651466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-384
               
               
               Cow position:chr23:1546384-1546238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:234-385
               
               
               Cow position:chr23:21539360-21539208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:234-397
               
               
               Cow position:chr23:20397263-20397426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:234-400
               
               
               Cow position:chr23:22205396-22205552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-407
               
               
               Cow position:chr23:17792220-17792393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:234-407
               
               
               Cow position:chr23:18740011-18740186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:234-412
               
               
               Cow position:chr23:5603543-5603719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr23:18489856-18489681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr23:18739257-18739440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-417
               
               
               Cow position:chr23:1798323-1798132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr23:12334426-12334232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 165

               
               
               Conread position:234-424
               
               
               Cow position:chr23:21628367-21628176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:234-424
               
               
               Cow position:chr23:21664506-21664319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:234-426
               
               
               Cow position:chr23:36200603-36200416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 78

               
               
               Conread position:234-427
               
               
               Cow position:chr23:38234-38038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:234-429
               
               
               Cow position:chr23:5685992-5686188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 79

               
               
               Conread position:234-442
               
               
               Cow position:chr23:9734625-9734406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):6, 179

               
               
               Conread position:234-442
               
               
               Cow position:chr23:26741286-26741495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:234-442
               
               
               Cow position:chr23:30585445-30585655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:234-442
               
               
               Cow position:chr23:40737811-40738023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:234-446
               
               
               Cow position:chr23:13137735-13137945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:234-492
               
               
               Cow position:chr23:18802063-18802332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-492
               
               
               Cow position:chr23:24927030-24926751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:234-493
               
               
               Cow position:chr23:19565650-19565387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr23:799462-799734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 251

               
               
               Conread position:234-494
               
               
               Cow position:chr23:1222037-1222302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:234-494
               
               
               Cow position:chr23:2457635-2457401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):163, 57

               
               
               Conread position:234-494
               
               
               Cow position:chr23:4968327-4968583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:234-494
               
               
               Cow position:chr23:5451526-5451262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:234-494
               
               
               Cow position:chr23:12091156-12091421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:234-494
               
               
               Cow position:chr23:21407568-21407822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:234-494
               
               
               Cow position:chr23:29626630-29626352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 248

               
               
               Conread position:234-494
               
               
               Cow position:chr23:29786139-29786409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr23:34356845-34356581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):185, 138

               
               
               Conread position:235-392
               
               
               Cow position:chr23:1739660-1739509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:235-392
               
               
               Cow position:chr23:17282164-17282012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:235-392
               
               
               Cow position:chr23:20454155-20454313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 98

               
               
               Conread position:235-397
               
               
               Cow position:chr23:35527284-35527121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:235-407
               
               
               Cow position:chr23:4291560-4291386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-410
               
               
               Cow position:chr23:34264549-34264724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 109

               
               
               Conread position:235-414
               
               
               Cow position:chr23:29330513-29330332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr23:33434866-33434685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:235-435
               
               
               Cow position:chr23:24809234-24809435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:235-442
               
               
               Cow position:chr23:56952-57168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr23:11225057-11224851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):184, 73

               
               
               Conread position:235-444
               
               
               Cow position:chr23:28574911-28574703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-469
               
               
               Cow position:chr23:40444059-40443826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):184, 77

               
               
               Conread position:235-493
               
               
               Cow position:chr23:1337104-1337362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:235-493
               
               
               Cow position:chr23:39778600-39778337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):184, 30

               
               
               Conread position:235-494
               
               
               Cow position:chr23:1583720-1583468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):210, 62

               
               
               Conread position:235-494
               
               
               Cow position:chr23:3293892-3293629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):181, 68

               
               
               Conread position:235-494
               
               
               Cow position:chr23:8293713-8293442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:235-494
               
               
               Cow position:chr23:11081461-11081192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:235-494
               
               
               Cow position:chr23:24509887-24509639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):184, 80

               
               
               Conread position:235-494
               
               
               Cow position:chr23:29345574-29345823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):228, 80

               
               
               Conread position:235-494
               
               
               Cow position:chr23:33570334-33570073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:235-494
               
               
               Cow position:chr23:35965352-35965080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr23:39302897-39302639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:236-490
               
               
               Cow position:chr23:22297828-22298095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:237-494
               
               
               Cow position:chr23:20194729-20194979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):182, 51

               
               
               Conread position:238-344
               
               
               Cow position:chr23:1871736-1871842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:238-351
               
               
               Cow position:chr23:1605798-1605685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 68

               
               
               Conread position:238-441
               
               
               Cow position:chr23:26283920-26283721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:238-490
               
               
               Cow position:chr23:283202-283455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):181, 30

               
               
               Conread position:238-490
               
               
               Cow position:chr23:22804922-22804667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):181, 21

               
               
               Conread position:238-494
               
               
               Cow position:chr23:26779474-26779731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:238-496
               
               
               Cow position:chr23:2286024-2285777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):141, 52

               
               
               Conread position:239-399
               
               
               Cow position:chr23:33599108-33599266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:239-400
               
               
               Cow position:chr23:10844758-10844594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:239-442
               
               
               Cow position:chr23:12405622-12405824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr23:20271934-20272085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):81, 93

               
               
               Conread position:240-396
               
               
               Cow position:chr23:3270497-3270341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:240-397
               
               
               Cow position:chr23:22324095-22324247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:240-398
               
               
               Cow position:chr23:4338149-4338306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:240-399
               
               
               Cow position:chr23:29607272-29607116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:240-402
               
               
               Cow position:chr23:5605463-5605295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-402
               
               
               Cow position:chr23:5612723-5612555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr23:1916373-1916213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:240-411
               
               
               Cow position:chr23:5617773-5617601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:240-411
               
               
               Cow position:chr23:26029356-26029177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:240-411
               
               
               Cow position:chr23:33232502-33232674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:240-413
               
               
               Cow position:chr23:28814577-28814401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-415
               
               
               Cow position:chr23:30244723-30244558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):170, 72

               
               
               Conread position:240-416
               
               
               Cow position:chr23:16664205-16664379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-427
               
               
               Cow position:chr23:32126503-32126315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:240-431
               
               
               Cow position:chr23:24718605-24718795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-442
               
               
               Cow position:chr23:1877699-1877900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-442
               
               
               Cow position:chr23:39202874-39203073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 138

               
               
               Conread position:240-444
               
               
               Cow position:chr23:6672430-6672641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:240-489
               
               
               Cow position:chr23:39049242-39049494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:240-490
               
               
               Cow position:chr23:18748878-18749124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):180, 78

               
               
               Conread position:240-492
               
               
               Cow position:chr23:5881323-5881579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-492
               
               
               Cow position:chr23:18901868-18902108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-494
               
               
               Cow position:chr23:1290504-1290231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr23:3281912-3282186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr23:5795674-5795415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr23:6172488-6172733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr23:10497894-10497646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 72

               
               
               Conread position:240-494
               
               
               Cow position:chr23:16961484-16961233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:240-494
               
               
               Cow position:chr23:24685438-24685189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr23:33711960-33711699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:240-495
               
               
               Cow position:chr23:26986074-26986336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:240-495
               
               
               Cow position:chr23:34314754-34315021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:241-380
               
               
               Cow position:chr23:2186865-2187006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:241-391
               
               
               Cow position:chr23:37993373-37993219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:241-403
               
               
               Cow position:chr23:31263097-31262934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:241-411
               
               
               Cow position:chr23:16246936-16246765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:241-424
               
               
               Cow position:chr23:9226471-9226296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):178, 54

               
               
               Conread position:241-424
               
               
               Cow position:chr23:10888465-10888288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):178, 105

               
               
               Conread position:241-488
               
               
               Cow position:chr23:11212701-11212449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):175, 73

               
               
               Conread position:241-491
               
               
               Cow position:chr23:39330097-39330349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:241-494
               
               
               Cow position:chr23:8923796-8923544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:241-494
               
               
               Cow position:chr23:12363422-12363681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 76

               
               
               Conread position:241-494
               
               
               Cow position:chr23:25864497-25864756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:241-495
               
               
               Cow position:chr23:13202172-13202425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:242-426
               
               
               Cow position:chr23:204486-204292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:242-444
               
               
               Cow position:chr23:30867103-30867305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:242-492
               
               
               Cow position:chr23:41472821-41472558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:244-390
               
               
               Cow position:chr23:2801237-2801386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:244-494
               
               
               Cow position:chr23:6224162-6223920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:245-414
               
               
               Cow position:chr23:4343677-4343506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:245-423
               
               
               Cow position:chr23:5927429-5927601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:245-446
               
               
               Cow position:chr23:11129429-11129224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:245-494
               
               
               Cow position:chr23:5436808-5437060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:245-494
               
               
               Cow position:chr23:17486634-17486889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):174, 75

               
               
               Conread position:246-397
               
               
               Cow position:chr23:40348454-40348603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:247-434
               
               
               Cow position:chr23:18611571-18611759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):63, 174

               
               
               Conread position:247-442
               
               
               Cow position:chr23:1536511-1536316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:248-404
               
               
               Cow position:chr23:61772-61917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr23:24700886-24701057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 160

               
               
               Conread position:248-417
               
               
               Cow position:chr23:24779350-24779521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-430
               
               
               Cow position:chr23:36022602-36022777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:248-431
               
               
               Cow position:chr23:5447935-5448119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:248-468
               
               
               Cow position:chr23:39811168-39811389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 132

               
               
               Conread position:248-481
               
               
               Cow position:chr23:2160452-2160685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):182, 47

               
               
               Conread position:248-494
               
               
               Cow position:chr23:22587068-22586826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:249-496
               
               
               Cow position:chr23:35247572-35247301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:250-410
               
               
               Cow position:chr23:13410572-13410727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:250-411
               
               
               Cow position:chr23:4972953-4972794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:250-494
               
               
               Cow position:chr23:2359064-2358829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):169, 28

               
               
               Conread position:252-493
               
               
               Cow position:chr23:9599674-9599428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:252-494
               
               
               Cow position:chr23:21452546-21452794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:253-442
               
               
               Cow position:chr23:14651522-14651707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 149

               
               
               Conread position:256-440
               
               
               Cow position:chr23:6768091-6767903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:259-481
               
               
               Cow position:chr23:3279290-3279509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:264-475
               
               
               Cow position:chr23:29480067-29479848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:264-494
               
               
               Cow position:chr23:8917505-8917737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:265-492
               
               
               Cow position:chr23:26825235-26825017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:266-426
               
               
               Cow position:chr23:39353107-39353265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:266-490
               
               
               Cow position:chr23:1701346-1701112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:267-414
               
               
               Cow position:chr23:19935090-19935232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:269-431
               
               
               Cow position:chr23:14191939-14191780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):147, 51

               
               
               Conread position:269-493
               
               
               Cow position:chr23:21765085-21764856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:270-442
               
               
               Cow position:chr23:20563865-20563692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:272-413
               
               
               Cow position:chr23:14753396-14753261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:272-442
               
               
               Cow position:chr23:4501910-4501748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):147, 45

               
               
               Conread position:272-490
               
               
               Cow position:chr23:6367763-6367550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):147, 48

               
               
               Conread position:274-414
               
               
               Cow position:chr23:987382-987523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:274-490
               
               
               Cow position:chr23:5723701-5723486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:275-442
               
               
               Cow position:chr23:39276061-39275887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:281-442
               
               
               Cow position:chr23:5786001-5785840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:281-494
               
               
               Cow position:chr23:39775882-39775662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:285-494
               
               
               Cow position:chr23:1701050-1700845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:285-494
               
               
               Cow position:chr23:5540298-5540097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:287-494
               
               
               Cow position:chr23:2799725-2799517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:288-494
               
               
               Cow position:chr23:33621997-33622215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:295-491
               
               
               Cow position:chr23:35368903-35369105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:295-494
               
               
               Cow position:chr23:1397895-1398098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 173

               
               
               Conread position:296-494
               
               
               Cow position:chr23:9268722-9268530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 104

               
               
               Conread position:298-493
               
               
               Cow position:chr23:35503916-35503723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:302-399
               
               
               Cow position:chr23:4336203-4336106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-406
               
               
               Cow position:chr23:35199477-35199373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-417
               
               
               Cow position:chr23:30109981-30109867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:302-426
               
               
               Cow position:chr23:18354785-18354661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:302-431
               
               
               Cow position:chr23:17231281-17231156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-442
               
               
               Cow position:chr23:18605272-18605411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-490
               
               
               Cow position:chr23:18402154-18402347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:302-493
               
               
               Cow position:chr23:21439864-21440063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:302-493
               
               
               Cow position:chr23:33717406-33717602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:302-494
               
               
               Cow position:chr23:21502494-21502702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr23:16076033-16076224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 14

               
               
               Conread position:307-407
               
               
               Cow position:chr23:1067955-1068055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:308-494
               
               
               Cow position:chr23:1589720-1589523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:308-494
               
               
               Cow position:chr23:5707124-5706931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:309-485
               
               
               Cow position:chr23:3244339-3244520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:310-494
               
               
               Cow position:chr23:30951084-30950894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:311-494
               
               
               Cow position:chr23:24867435-24867243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:314-494
               
               
               Cow position:chr23:348823-349013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr23:13599460-13599282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):127, 100

               
               
               Conread position:319-494
               
               
               Cow position:chr23:16699922-16700101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr23:29458979-29459153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 126

               
               
               Conread position:320-495
               
               
               Cow position:chr23:1876831-1876647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:327-494
               
               
               Cow position:chr23:1403694-1403867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr23:11473395-11473571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:365-494
               
               
               Cow position:chr23:5400740-5400603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:204-414
               
               
               Cow position:chr24:11155459-11155668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:209-490
               
               
               Cow position:chr24:16645121-16645408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:211-316
               
               
               Cow position:chr24:4674498-4674606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:215-442
               
               
               Cow position:chr24:19624061-19623825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:217-494
               
               
               Cow position:chr24:20588367-20588082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:222-467
               
               
               Cow position:chr24:5360903-5360663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:222-494
               
               
               Cow position:chr24:27607922-27608190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):197, 92

               
               
               Conread position:223-377
               
               
               Cow position:chr24:18324090-18324245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:223-382
               
               
               Cow position:chr24:43027035-43027197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:223-398
               
               
               Cow position:chr24:35335271-35335105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:223-414
               
               
               Cow position:chr24:18541269-18541452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:223-414
               
               
               Cow position:chr24:27810337-27810156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:223-424
               
               
               Cow position:chr24:34301848-34302049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:223-426
               
               
               Cow position:chr24:11735881-11736084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:223-427
               
               
               Cow position:chr24:358558-358350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 123

               
               
               Conread position:223-439
               
               
               Cow position:chr24:32890858-32891072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:223-441
               
               
               Cow position:chr24:6739986-6740198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:223-442
               
               
               Cow position:chr24:27448834-27448613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:223-442
               
               
               Cow position:chr24:28690873-28690654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:223-488
               
               
               Cow position:chr24:10300267-10299998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:224-385
               
               
               Cow position:chr24:3404802-3404645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:224-443
               
               
               Cow position:chr24:42226452-42226241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:225-345
               
               
               Cow position:chr24:42792537-42792420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:225-403
               
               
               Cow position:chr24:28788044-28787862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 140

               
               
               Conread position:225-410
               
               
               Cow position:chr24:18702588-18702400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:225-417
               
               
               Cow position:chr24:25142808-25142604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:225-424
               
               
               Cow position:chr24:39960819-39961011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:225-425
               
               
               Cow position:chr24:6700169-6700371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 123

               
               
               Conread position:225-430
               
               
               Cow position:chr24:39903822-39904023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 95

               
               
               Conread position:225-489
               
               
               Cow position:chr24:43598695-43598957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:225-494
               
               
               Cow position:chr24:3494065-3493797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):194, 15

               
               
               Conread position:225-494
               
               
               Cow position:chr24:6450695-6450408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 156

               
               
               Conread position:225-496
               
               
               Cow position:chr24:43028141-43028421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:227-310
               
               
               Cow position:chr24:33217822-33217905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-339
               
               
               Cow position:chr24:2448641-2448528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-376
               
               
               Cow position:chr24:12241905-12241754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr24:22641276-22641112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 120

               
               
               Conread position:227-389
               
               
               Cow position:chr24:24136224-24136380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:227-391
               
               
               Cow position:chr24:28476695-28476528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr24:43445827-43445994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:227-395
               
               
               Cow position:chr24:27719346-27719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-397
               
               
               Cow position:chr24:40025196-40025362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:227-411
               
               
               Cow position:chr24:885261-885441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 79

               
               
               Conread position:227-414
               
               
               Cow position:chr24:14587968-14587775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:227-414
               
               
               Cow position:chr24:29587184-29586998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 59

               
               
               Conread position:227-414
               
               
               Cow position:chr24:40811852-40811677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:227-416
               
               
               Cow position:chr24:9300814-9300623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):90, 118

               
               
               Conread position:227-416
               
               
               Cow position:chr24:24165729-24165537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr24:43219897-43220079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:227-420
               
               
               Cow position:chr24:250351-250546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):93, 121

               
               
               Conread position:227-431
               
               
               Cow position:chr24:3412865-3412663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):192, 90

               
               
               Conread position:227-439
               
               
               Cow position:chr24:8677009-8676795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-440
               
               
               Cow position:chr24:32978991-32979197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:227-442
               
               
               Cow position:chr24:14550974-14550764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):190, 62

               
               
               Conread position:227-442
               
               
               Cow position:chr24:27202269-27202058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:227-442
               
               
               Cow position:chr24:29539746-29539960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):100, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr24:34390455-34390252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:227-443
               
               
               Cow position:chr24:10242601-10242815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:227-456
               
               
               Cow position:chr24:26848557-26848778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:227-459
               
               
               Cow position:chr24:18731926-18732154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-460
               
               
               Cow position:chr24:26880940-26880702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:227-469
               
               
               Cow position:chr24:23863442-23863693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:227-472
               
               
               Cow position:chr24:25112381-25112139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:227-487
               
               
               Cow position:chr24:18442388-18442643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):142, 87

               
               
               Conread position:227-488
               
               
               Cow position:chr24:31159814-31159538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):95, 194

               
               
               Conread position:227-490
               
               
               Cow position:chr24:7777450-7777704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:227-490
               
               
               Cow position:chr24:19000229-18999964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:227-492
               
               
               Cow position:chr24:17311046-17311306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-492
               
               
               Cow position:chr24:28303179-28303454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):154, 14

               
               
               Conread position:227-493
               
               
               Cow position:chr24:27040233-27039959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:227-493
               
               
               Cow position:chr24:27285008-27284732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 180

               
               
               Conread position:227-493
               
               
               Cow position:chr24:30229658-30229383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 96

               
               
               Conread position:227-494
               
               
               Cow position:chr24:230464-230187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):185, 74

               
               
               Conread position:227-494
               
               
               Cow position:chr24:5142122-5141855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr24:6103006-6102736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr24:18356872-18357143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:227-494
               
               
               Cow position:chr24:21519614-21519345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 131

               
               
               Conread position:227-494
               
               
               Cow position:chr24:26928757-26929033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:227-495
               
               
               Cow position:chr24:40592899-40592625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:228-382
               
               
               Cow position:chr24:30176634-30176476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:228-399
               
               
               Cow position:chr24:32818094-32818290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:228-424
               
               
               Cow position:chr24:44103985-44104183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:228-483
               
               
               Cow position:chr24:29605849-29606113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:228-493
               
               
               Cow position:chr24:40301344-40301071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:228-494
               
               
               Cow position:chr24:37038074-37037808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):155, 75

               
               
               Conread position:228-494
               
               
               Cow position:chr24:44040832-44041100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):191, 17

               
               
               Conread position:229-375
               
               
               Cow position:chr24:29524208-29524348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:229-397
               
               
               Cow position:chr24:22194598-22194434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:229-493
               
               
               Cow position:chr24:28553390-28553640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):187, 39

               
               
               Conread position:229-493
               
               
               Cow position:chr24:30483762-30484038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):152, 85

               
               
               Conread position:229-494
               
               
               Cow position:chr24:20807706-20807446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:230-389
               
               
               Cow position:chr24:38693696-38693856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:230-391
               
               
               Cow position:chr24:15861410-15861573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-394
               
               
               Cow position:chr24:16303503-16303659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr24:18750891-18750721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr24:21656591-21656419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-400
               
               
               Cow position:chr24:11035331-11035494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:230-405
               
               
               Cow position:chr24:42146386-42146217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:230-406
               
               
               Cow position:chr24:7275879-7275709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr24:28255883-28256053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:230-406
               
               
               Cow position:chr24:31383289-31383122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-407
               
               
               Cow position:chr24:36554520-36554693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:230-411
               
               
               Cow position:chr24:38815155-38814968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr24:3542483-3542294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr24:5152707-5152518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:230-417
               
               
               Cow position:chr24:12121080-12120891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr24:13888886-13888697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr24:17689430-17689616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:230-417
               
               
               Cow position:chr24:18730528-18730339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr24:25263551-25263744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr24:25756117-25756305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr24:25970903-25971079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr24:33621297-33621486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr24:34079157-34079344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 76

               
               
               Conread position:230-417
               
               
               Cow position:chr24:44775993-44776182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-425
               
               
               Cow position:chr24:12200227-12200420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:230-425
               
               
               Cow position:chr24:20323317-20323513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 192

               
               
               Conread position:230-430
               
               
               Cow position:chr24:29677728-29677935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-431
               
               
               Cow position:chr24:6887187-6886991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):189, 73

               
               
               Conread position:230-441
               
               
               Cow position:chr24:19187113-19186912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr24:17308960-17309168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr24:19730963-19730748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr24:36303128-36303348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 134

               
               
               Conread position:230-442
               
               
               Cow position:chr24:39910850-39911065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:230-444
               
               
               Cow position:chr24:24227510-24227713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):185, 67

               
               
               Conread position:230-470
               
               
               Cow position:chr24:18344247-18344003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-480
               
               
               Cow position:chr24:40055331-40055580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:230-484
               
               
               Cow position:chr24:18474548-18474808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-485
               
               
               Cow position:chr24:13586810-13587068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):157, 114

               
               
               Conread position:230-485
               
               
               Cow position:chr24:18811013-18810763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:230-488
               
               
               Cow position:chr24:42103542-42103292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:230-492
               
               
               Cow position:chr24:36403975-36404231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):189, 58

               
               
               Conread position:230-493
               
               
               Cow position:chr24:3166000-3165728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:230-493
               
               
               Cow position:chr24:3656183-3656455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr24:1269958-1269703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr24:7914190-7913915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr24:10499399-10499123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:230-494
               
               
               Cow position:chr24:18484810-18485086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:230-494
               
               
               Cow position:chr24:19465728-19466010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:230-494
               
               
               Cow position:chr24:19535071-19535343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:230-494
               
               
               Cow position:chr24:20364235-20364499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:230-494
               
               
               Cow position:chr24:23574978-23575246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 217

               
               
               Conread position:230-494
               
               
               Cow position:chr24:27348995-27349269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr24:31812366-31812098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-494
               
               
               Cow position:chr24:36711376-36711112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:230-494
               
               
               Cow position:chr24:37395026-37395298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr24:37823705-37823439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:230-496
               
               
               Cow position:chr24:27844352-27844621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 90

               
               
               Conread position:231-368
               
               
               Cow position:chr24:31160862-31160994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:231-388
               
               
               Cow position:chr24:3193091-3193249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:231-392
               
               
               Cow position:chr24:27958287-27958450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:231-406
               
               
               Cow position:chr24:18405099-18405275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:231-406
               
               
               Cow position:chr24:23000181-23000019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:231-407
               
               
               Cow position:chr24:35517108-35517293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 129

               
               
               Conread position:231-414
               
               
               Cow position:chr24:2380134-2379950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:231-416
               
               
               Cow position:chr24:22567286-22567099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 166

               
               
               Conread position:231-416
               
               
               Cow position:chr24:37267845-37267658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:231-430
               
               
               Cow position:chr24:33098292-33098490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):195, 184

               
               
               Conread position:231-438
               
               
               Cow position:chr24:29595620-29595836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:231-442
               
               
               Cow position:chr24:18668763-18668547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:231-443
               
               
               Cow position:chr24:21834783-21834991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):188, 90

               
               
               Conread position:231-494
               
               
               Cow position:chr24:175328-175586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):188, 53

               
               
               Conread position:231-494
               
               
               Cow position:chr24:880801-880540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):184, 50

               
               
               Conread position:231-494
               
               
               Cow position:chr24:11840364-11840100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):188, 45

               
               
               Conread position:231-494
               
               
               Cow position:chr24:17955285-17955530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr24:27713230-27713496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 73

               
               
               Conread position:231-494
               
               
               Cow position:chr24:27725828-27726104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr24:30313849-30314118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr24:32054824-32054571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr24:39290227-39289954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:231-494
               
               
               Cow position:chr24:43537139-43536863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:232-316
               
               
               Cow position:chr24:39841355-39841439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:76
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-336
               
               
               Cow position:chr24:30544711-30544817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-337
               
               
               Cow position:chr24:10226721-10226615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:232-368
               
               
               Cow position:chr24:43011186-43011328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-393
               
               
               Cow position:chr24:6488383-6488227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr24:22129465-22129623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-411
               
               
               Cow position:chr24:30325603-30325783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):117, 82

               
               
               Conread position:232-414
               
               
               Cow position:chr24:27203632-27203458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr24:28024447-28024274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):8, 48

               
               
               Conread position:232-430
               
               
               Cow position:chr24:18302894-18302695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 169

               
               
               Conread position:232-434
               
               
               Cow position:chr24:27940449-27940644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:232-442
               
               
               Cow position:chr24:42688021-42687817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:232-443
               
               
               Cow position:chr24:2730447-2730644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:232-443
               
               
               Cow position:chr24:28510970-28510765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-492
               
               
               Cow position:chr24:37974804-37975070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:232-494
               
               
               Cow position:chr24:2402198-2402457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 48

               
               
               Conread position:232-494
               
               
               Cow position:chr24:17104393-17104661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr24:19179257-19179528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:232-496
               
               
               Cow position:chr24:6151956-6151703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):213, 27

               
               
               Conread position:233-344
               
               
               Cow position:chr24:20880655-20880765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:233-380
               
               
               Cow position:chr24:41925994-41925854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-407
               
               
               Cow position:chr24:34772124-34772308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-441
               
               
               Cow position:chr24:390278-390074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:233-442
               
               
               Cow position:chr24:24755607-24755416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):186, 30

               
               
               Conread position:233-460
               
               
               Cow position:chr24:35365530-35365760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:233-472
               
               
               Cow position:chr24:43832700-43832466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):186, 82

               
               
               Conread position:233-484
               
               
               Cow position:chr24:34396012-34396253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):186, 41

               
               
               Conread position:233-490
               
               
               Cow position:chr24:44987194-44987463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:233-492
               
               
               Cow position:chr24:20225922-20225657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:233-494
               
               
               Cow position:chr24:11119472-11119196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:233-494
               
               
               Cow position:chr24:28600260-28600528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:233-494
               
               
               Cow position:chr24:34742927-34742663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:233-496
               
               
               Cow position:chr24:24457064-24457340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:234-311
               
               
               Cow position:chr24:20537604-20537681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:78
               
               
               Alignm identity:71
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-382
               
               
               Cow position:chr24:19763351-19763501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-391
               
               
               Cow position:chr24:3057103-3056952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-392
               
               
               Cow position:chr24:38006535-38006698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr24:26588395-26588235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-401
               
               
               Cow position:chr24:43349470-43349628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:234-409
               
               
               Cow position:chr24:31782054-31781873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:234-411
               
               
               Cow position:chr24:36286745-36286570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:234-415
               
               
               Cow position:chr24:22420139-22419957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:234-416
               
               
               Cow position:chr24:15557167-15557346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:234-417
               
               
               Cow position:chr24:7846519-7846703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 155

               
               
               Conread position:234-417
               
               
               Cow position:chr24:21715173-21715356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:234-417
               
               
               Cow position:chr24:27906615-27906433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:234-417
               
               
               Cow position:chr24:37252334-37252152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:234-438
               
               
               Cow position:chr24:36775594-36775804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 58

               
               
               Conread position:234-442
               
               
               Cow position:chr24:2992703-2992910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:234-442
               
               
               Cow position:chr24:23666948-23667149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr24:35310904-35310690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:234-457
               
               
               Cow position:chr24:11028510-11028739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:234-488
               
               
               Cow position:chr24:42862802-42862540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 125

               
               
               Conread position:234-490
               
               
               Cow position:chr24:352427-352690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 152

               
               
               Conread position:234-490
               
               
               Cow position:chr24:25194443-25194185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:234-492
               
               
               Cow position:chr24:28496406-28496670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:234-493
               
               
               Cow position:chr24:27149559-27149308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:234-494
               
               
               Cow position:chr24:15289004-15288731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 84

               
               
               Conread position:234-494
               
               
               Cow position:chr24:15353621-15353365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:234-494
               
               
               Cow position:chr24:16089406-16089141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:234-494
               
               
               Cow position:chr24:28722054-28721802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):209, 72

               
               
               Conread position:235-392
               
               
               Cow position:chr24:16641089-16640930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-397
               
               
               Cow position:chr24:14373403-14373567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:235-397
               
               
               Cow position:chr24:26808767-26808606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:235-398
               
               
               Cow position:chr24:27412939-27413097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr24:34272995-34272816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:235-407
               
               
               Cow position:chr24:25947683-25947857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 128

               
               
               Conread position:235-411
               
               
               Cow position:chr24:41980484-41980658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:235-414
               
               
               Cow position:chr24:11836225-11836406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:235-414
               
               
               Cow position:chr24:11921732-11921913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr24:27066406-27066228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:235-414
               
               
               Cow position:chr24:39304735-39304923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr24:20017249-20017433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr24:23046719-23046903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr24:43499833-43499653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):117, 26

               
               
               Conread position:235-422
               
               
               Cow position:chr24:18021093-18021282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:235-430
               
               
               Cow position:chr24:19769047-19768851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:235-442
               
               
               Cow position:chr24:7757945-7757741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):180, 73

               
               
               Conread position:235-442
               
               
               Cow position:chr24:13626462-13626252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:235-443
               
               
               Cow position:chr24:21606500-21606705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 150

               
               
               Conread position:235-444
               
               
               Cow position:chr24:42984571-42984358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:235-451
               
               
               Cow position:chr24:34896525-34896739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:235-460
               
               
               Cow position:chr24:36035875-36036112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:235-474
               
               
               Cow position:chr24:18137124-18137372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr24:2359009-2359265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):122, 91

               
               
               Conread position:235-494
               
               
               Cow position:chr24:13948298-13948032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:235-494
               
               
               Cow position:chr24:15057560-15057312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 28

               
               
               Conread position:235-494
               
               
               Cow position:chr24:16510147-16509882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):184, 24

               
               
               Conread position:235-494
               
               
               Cow position:chr24:18755936-18755667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:235-494
               
               
               Cow position:chr24:19801015-19800757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:235-494
               
               
               Cow position:chr24:22689397-22689670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr24:35675707-35675456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):181, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr24:41406070-41405808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:235-496
               
               
               Cow position:chr24:37650851-37650580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:236-417
               
               
               Cow position:chr24:162181-161998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):77, 123

               
               
               Conread position:236-417
               
               
               Cow position:chr24:27553275-27553090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 51

               
               
               Conread position:236-422
               
               
               Cow position:chr24:35405191-35405379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:237-417
               
               
               Cow position:chr24:44896215-44896033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:238-417
               
               
               Cow position:chr24:18374937-18374763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:238-442
               
               
               Cow position:chr24:42726631-42726419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:238-494
               
               
               Cow position:chr24:17832656-17832902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:239-382
               
               
               Cow position:chr24:18817562-18817416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-442
               
               
               Cow position:chr24:19637759-19637552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:240-380
               
               
               Cow position:chr24:2223050-2223180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr24:24013936-24013770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-408
               
               
               Cow position:chr24:24091163-24091336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr24:26569630-26569458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 122

               
               
               Conread position:240-411
               
               
               Cow position:chr24:33238083-33238264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 132

               
               
               Conread position:240-412
               
               
               Cow position:chr24:21887280-21887458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 56

               
               
               Conread position:240-414
               
               
               Cow position:chr24:17284812-17284988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:240-420
               
               
               Cow position:chr24:28035767-28035592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:240-427
               
               
               Cow position:chr24:4634994-4635184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-438
               
               
               Cow position:chr24:18874649-18874848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:240-441
               
               
               Cow position:chr24:21524236-21524034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:240-442
               
               
               Cow position:chr24:16995049-16994851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:240-442
               
               
               Cow position:chr24:20801174-20801377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-442
               
               
               Cow position:chr24:22133337-22133140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:240-443
               
               
               Cow position:chr24:29984819-29985016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):179, 63

               
               
               Conread position:240-444
               
               
               Cow position:chr24:26001558-26001354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:240-445
               
               
               Cow position:chr24:13610472-13610276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:240-478
               
               
               Cow position:chr24:42175696-42175462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):166, 78

               
               
               Conread position:240-490
               
               
               Cow position:chr24:39849721-39849972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):174, 66

               
               
               Conread position:240-492
               
               
               Cow position:chr24:24490855-24491105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):179, 9

               
               
               Conread position:240-494
               
               
               Cow position:chr24:212141-211896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr24:11887324-11887069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):179, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr24:13353197-13352949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr24:25884977-25885250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 172

               
               
               Conread position:240-494
               
               
               Cow position:chr24:28063121-28062863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr24:30236043-30235778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr24:33372717-33372469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):179, 75

               
               
               Conread position:240-494
               
               
               Cow position:chr24:33944577-33944314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr24:44870166-44869918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:241-345
               
               
               Cow position:chr24:11208740-11208639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:241-393
               
               
               Cow position:chr24:13599-13747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-395
               
               
               Cow position:chr24:24540322-24540474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:241-414
               
               
               Cow position:chr24:2261840-2261665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:241-494
               
               
               Cow position:chr24:17860092-17860350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):175, 75

               
               
               Conread position:241-494
               
               
               Cow position:chr24:27219918-27220177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:241-494
               
               
               Cow position:chr24:39523280-39523536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:241-496
               
               
               Cow position:chr24:28234211-28233958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:242-396
               
               
               Cow position:chr24:18696051-18695890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr24:24532340-24532174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr24:10219217-10219390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr24:37651890-37651694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:242-461
               
               
               Cow position:chr24:41565931-41566144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:242-464
               
               
               Cow position:chr24:32739094-32739324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:242-469
               
               
               Cow position:chr24:33244555-33244337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:242-494
               
               
               Cow position:chr24:15246489-15246733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:242-494
               
               
               Cow position:chr24:22079632-22079373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:242-494
               
               
               Cow position:chr24:23694742-23694984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:242-494
               
               
               Cow position:chr24:43371412-43371158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):177, 75

               
               
               Conread position:244-490
               
               
               Cow position:chr24:17751941-17752198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:244-491
               
               
               Cow position:chr24:25122504-25122267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):171, 73

               
               
               Conread position:244-494
               
               
               Cow position:chr24:6131720-6131964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:244-494
               
               
               Cow position:chr24:27630566-27630314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:245-417
               
               
               Cow position:chr24:11036671-11036840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:245-447
               
               
               Cow position:chr24:32230338-32230544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 50

               
               
               Conread position:245-492
               
               
               Cow position:chr24:36173613-36173868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 91

               
               
               Conread position:246-393
               
               
               Cow position:chr24:38427945-38428094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:246-494
               
               
               Cow position:chr24:40130301-40130038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:247-390
               
               
               Cow position:chr24:15340286-15340433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:247-399
               
               
               Cow position:chr24:41423760-41423616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-494
               
               
               Cow position:chr24:29561415-29561665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):172, 25

               
               
               Conread position:248-407
               
               
               Cow position:chr24:22221543-22221382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:248-407
               
               
               Cow position:chr24:43358858-43358703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:248-411
               
               
               Cow position:chr24:17294032-17294196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):68, 148

               
               
               Conread position:248-411
               
               
               Cow position:chr24:27271092-27270927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:248-417
               
               
               Cow position:chr24:18741402-18741577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr24:22887851-22888023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 65

               
               
               Conread position:248-494
               
               
               Cow position:chr24:38841270-38841498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):219, 59

               
               
               Conread position:248-496
               
               
               Cow position:chr24:31036501-31036260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):142, 11

               
               
               Conread position:249-399
               
               
               Cow position:chr24:17073103-17073245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:249-417
               
               
               Cow position:chr24:6008008-6008175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 76

               
               
               Conread position:249-469
               
               
               Cow position:chr24:6742387-6742164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:249-493
               
               
               Cow position:chr24:35632143-35631899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:250-376
               
               
               Cow position:chr24:25231163-25231282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:250-424
               
               
               Cow position:chr24:22647174-22647353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:250-476
               
               
               Cow position:chr24:41916418-41916183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):162, 56

               
               
               Conread position:250-494
               
               
               Cow position:chr24:7476189-7476441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:250-494
               
               
               Cow position:chr24:31816736-31816487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:251-494
               
               
               Cow position:chr24:28990722-28990473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:256-492
               
               
               Cow position:chr24:6912203-6912455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:262-439
               
               
               Cow position:chr24:37453347-37453532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:264-389
               
               
               Cow position:chr24:25482403-25482277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:264-494
               
               
               Cow position:chr24:29782311-29782075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:265-442
               
               
               Cow position:chr24:20943306-20943137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:265-494
               
               
               Cow position:chr24:20874826-20874591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):154, 49

               
               
               Conread position:268-382
               
               
               Cow position:chr24:27386847-27386963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:269-494
               
               
               Cow position:chr24:31359460-31359235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):147, 51

               
               
               Conread position:271-494
               
               
               Cow position:chr24:35576395-35576622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:272-398
               
               
               Cow position:chr24:33311219-33311342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr24:28355558-28355680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:274-417
               
               
               Cow position:chr24:39218406-39218557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:275-390
               
               
               Cow position:chr24:34768430-34768546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:280-494
               
               
               Cow position:chr24:30897406-30897627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:285-494
               
               
               Cow position:chr24:17375766-17375560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:296-494
               
               
               Cow position:chr24:27748757-27748556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:298-493
               
               
               Cow position:chr24:23186806-23187009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 26

               
               
               Conread position:300-494
               
               
               Cow position:chr24:5754945-5754747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:301-494
               
               
               Cow position:chr24:14457617-14457812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:301-496
               
               
               Cow position:chr24:28319098-28319303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:302-413
               
               
               Cow position:chr24:35029951-35030062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-492
               
               
               Cow position:chr24:30308448-30308644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 45

               
               
               Conread position:302-494
               
               
               Cow position:chr24:15373517-15373318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:302-494
               
               
               Cow position:chr24:19769601-19769399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr24:39791650-39791450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:303-494
               
               
               Cow position:chr24:24662022-24662219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr24:33221823-33222031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:304-411
               
               
               Cow position:chr24:43024366-43024261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:305-496
               
               
               Cow position:chr24:28043080-28042881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:307-442
               
               
               Cow position:chr24:42981657-42981790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):112, 93

               
               
               Conread position:307-494
               
               
               Cow position:chr24:28326977-28327175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:308-440
               
               
               Cow position:chr24:20969559-20969691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:308-489
               
               
               Cow position:chr24:16118462-16118281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:309-494
               
               
               Cow position:chr24:28289153-28289338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:313-494
               
               
               Cow position:chr24:24250821-24250639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 117

               
               
               Conread position:318-494
               
               
               Cow position:chr24:29063565-29063743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:321-494
               
               
               Cow position:chr24:31324375-31324193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:328-494
               
               
               Cow position:chr24:19736251-19736424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:175-490
               
               
               Cow position:chr25:14513362-14513049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:201-417
               
               
               Cow position:chr25:28662339-28662127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:207-490
               
               
               Cow position:chr25:25716875-25716588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 115

               
               
               Conread position:210-442
               
               
               Cow position:chr25:40682959-40682729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:214-494
               
               
               Cow position:chr25:23828909-23829197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):6, 112

               
               
               Conread position:216-494
               
               
               Cow position:chr25:36082085-36081810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:216-496
               
               
               Cow position:chr25:16921576-16921864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 133

               
               
               Conread position:219-494
               
               
               Cow position:chr25:20008347-20008068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 11

               
               
               Conread position:221-411
               
               
               Cow position:chr25:18934424-18934612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr25:2195179-2195317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:222-390
               
               
               Cow position:chr25:19460287-19460117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 141

               
               
               Conread position:222-392
               
               
               Cow position:chr25:24207204-24207373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:222-442
               
               
               Cow position:chr25:20203117-20202904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:222-462
               
               
               Cow position:chr25:2041673-2041907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):194, 30

               
               
               Conread position:222-479
               
               
               Cow position:chr25:26524173-26523909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:223-354
               
               
               Cow position:chr25:22917288-22917414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:223-391
               
               
               Cow position:chr25:13565123-13565280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:223-398
               
               
               Cow position:chr25:8596268-8596434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:223-414
               
               
               Cow position:chr25:24147746-24147926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:223-416
               
               
               Cow position:chr25:1802821-1802629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):94, 102

               
               
               Conread position:223-417
               
               
               Cow position:chr25:11957014-11956821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:223-442
               
               
               Cow position:chr25:6473864-6474096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:223-485
               
               
               Cow position:chr25:7581213-7581482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:223-494
               
               
               Cow position:chr25:12305488-12305209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:223-496
               
               
               Cow position:chr25:24669243-24669505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:224-493
               
               
               Cow position:chr25:17474305-17474579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:224-494
               
               
               Cow position:chr25:18720919-18721189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 20

               
               
               Conread position:225-405
               
               
               Cow position:chr25:9640826-9641008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:225-406
               
               
               Cow position:chr25:2111243-2111073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-426
               
               
               Cow position:chr25:2662602-2662406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:225-439
               
               
               Cow position:chr25:9573928-9574136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):191, 16

               
               
               Conread position:225-442
               
               
               Cow position:chr25:35612092-35612322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-467
               
               
               Cow position:chr25:22298840-22298605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:225-484
               
               
               Cow position:chr25:24573265-24573010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):191, 16

               
               
               Conread position:225-490
               
               
               Cow position:chr25:432840-433112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:225-494
               
               
               Cow position:chr25:33557473-33557207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:225-496
               
               
               Cow position:chr25:11316111-11315837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:226-317
               
               
               Cow position:chr25:36023171-36023080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-442
               
               
               Cow position:chr25:17919184-17918965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:227-315
               
               
               Cow position:chr25:13822651-13822563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:76
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-338
               
               
               Cow position:chr25:12755285-12755396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-380
               
               
               Cow position:chr25:20019771-20019918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):144, 90

               
               
               Conread position:227-382
               
               
               Cow position:chr25:28939934-28940089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr25:15305886-15305706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:227-407
               
               
               Cow position:chr25:12223770-12223598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr25:24863073-24862902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr25:33100783-33100595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:227-417
               
               
               Cow position:chr25:5791507-5791700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr25:28945222-28945037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:227-431
               
               
               Cow position:chr25:30852971-30852769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):192, 90

               
               
               Conread position:227-441
               
               
               Cow position:chr25:5808154-5807937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 121

               
               
               Conread position:227-442
               
               
               Cow position:chr25:2362032-2361828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:227-442
               
               
               Cow position:chr25:35109074-35109278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-469
               
               
               Cow position:chr25:28597395-28597649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-488
               
               
               Cow position:chr25:26089620-26089877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:227-492
               
               
               Cow position:chr25:38958150-38957896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:227-494
               
               
               Cow position:chr25:447954-448233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:227-494
               
               
               Cow position:chr25:10949360-10949649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 159

               
               
               Conread position:227-494
               
               
               Cow position:chr25:19850071-19849788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr25:21245387-21245670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr25:23053769-23053493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 123

               
               
               Conread position:227-494
               
               
               Cow position:chr25:26087724-26087454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:227-494
               
               
               Cow position:chr25:26136614-26136889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:228-372
               
               
               Cow position:chr25:14529703-14529852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:228-378
               
               
               Cow position:chr25:37648987-37648838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr25:1509758-1509931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:228-429
               
               
               Cow position:chr25:24115112-24115312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):191, 12

               
               
               Conread position:228-440
               
               
               Cow position:chr25:17704947-17704737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:228-443
               
               
               Cow position:chr25:23519830-23520038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:229-398
               
               
               Cow position:chr25:8410829-8410998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:229-411
               
               
               Cow position:chr25:26989404-26989220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:229-417
               
               
               Cow position:chr25:11857782-11857970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):137, 94

               
               
               Conread position:229-492
               
               
               Cow position:chr25:11432746-11433017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:229-494
               
               
               Cow position:chr25:33550715-33550441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 106

               
               
               Conread position:230-339
               
               
               Cow position:chr25:6268264-6268154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:230-351
               
               
               Cow position:chr25:16491300-16491181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-379
               
               
               Cow position:chr25:22203486-22203644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:230-380
               
               
               Cow position:chr25:22642476-22642318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-380
               
               
               Cow position:chr25:26643015-26642861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr25:23769694-23769845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-393
               
               
               Cow position:chr25:21082203-21082366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-400
               
               
               Cow position:chr25:40921755-40921587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr25:5922511-5922679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr25:35802460-35802635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:230-407
               
               
               Cow position:chr25:19106604-19106445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-410
               
               
               Cow position:chr25:18491240-18491062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:230-413
               
               
               Cow position:chr25:36070850-36070672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:230-414
               
               
               Cow position:chr25:3141704-3141523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr25:11373690-11373882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr25:21443163-21443349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr25:36370024-36369839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:230-414
               
               
               Cow position:chr25:36375715-36375530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:230-414
               
               
               Cow position:chr25:37965467-37965277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:230-417
               
               
               Cow position:chr25:7277122-7277308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 127

               
               
               Conread position:230-417
               
               
               Cow position:chr25:7311191-7311378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:230-417
               
               
               Cow position:chr25:7403135-7403324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr25:14102872-14102683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:230-417
               
               
               Cow position:chr25:17724017-17724207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:230-417
               
               
               Cow position:chr25:20349077-20348886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:230-417
               
               
               Cow position:chr25:33311120-33311309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:230-421
               
               
               Cow position:chr25:31926181-31926365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:230-429
               
               
               Cow position:chr25:27916204-27916019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):186, 64

               
               
               Conread position:230-430
               
               
               Cow position:chr25:11060338-11060135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:230-440
               
               
               Cow position:chr25:36872852-36873063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr25:5637186-5637394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr25:7673512-7673286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr25:30624866-30625092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr25:33663706-33663914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):105, 85

               
               
               Conread position:230-442
               
               
               Cow position:chr25:36717115-36716912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:230-449
               
               
               Cow position:chr25:33776263-33776042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):47, 187

               
               
               Conread position:230-474
               
               
               Cow position:chr25:24202809-24203050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:230-490
               
               
               Cow position:chr25:18201726-18201988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:230-490
               
               
               Cow position:chr25:26224833-26225088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 86

               
               
               Conread position:230-490
               
               
               Cow position:chr25:33555811-33555545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 155

               
               
               Conread position:230-491
               
               
               Cow position:chr25:7008126-7007845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:230-491
               
               
               Cow position:chr25:19478893-19478609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr25:1840524-1840255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:230-493
               
               
               Cow position:chr25:12807242-12806978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr25:1838446-1838171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 93

               
               
               Conread position:230-494
               
               
               Cow position:chr25:6463825-6464098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 158

               
               
               Conread position:230-494
               
               
               Cow position:chr25:11051725-11051461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr25:11276750-11276485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:230-494
               
               
               Cow position:chr25:26701223-26700964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):189, 86

               
               
               Conread position:230-496
               
               
               Cow position:chr25:4489106-4488847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):195, 60

               
               
               Conread position:231-387
               
               
               Cow position:chr25:29903835-29903683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:231-388
               
               
               Cow position:chr25:17141305-17141148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-393
               
               
               Cow position:chr25:6891115-6891273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr25:11543399-11543557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:231-409
               
               
               Cow position:chr25:20063462-20063299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:231-413
               
               
               Cow position:chr25:20162284-20162471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr25:18551131-18551317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:231-440
               
               
               Cow position:chr25:8347855-8347645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr25:9269542-9269339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr25:18288568-18288777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:231-467
               
               
               Cow position:chr25:12206742-12206504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 216

               
               
               Conread position:231-468
               
               
               Cow position:chr25:11760258-11760485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):188, 66

               
               
               Conread position:231-480
               
               
               Cow position:chr25:35762790-35762537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):145, 238

               
               
               Conread position:231-484
               
               
               Cow position:chr25:14833466-14833718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):152, 86

               
               
               Conread position:231-487
               
               
               Cow position:chr25:7551167-7551421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):189, 92

               
               
               Conread position:231-493
               
               
               Cow position:chr25:22731027-22730763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):169, 72

               
               
               Conread position:231-494
               
               
               Cow position:chr25:7441211-7440959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):219, 73

               
               
               Conread position:231-494
               
               
               Cow position:chr25:11585731-11585450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr25:20523036-20523302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr25:21191679-21191420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):188, 58

               
               
               Conread position:231-494
               
               
               Cow position:chr25:35348108-35347841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:231-494
               
               
               Cow position:chr25:36073802-36074067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:232-316
               
               
               Cow position:chr25:15218359-15218276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-320
               
               
               Cow position:chr25:12899967-12899879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-320
               
               
               Cow position:chr25:14212066-14211978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:76
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-342
               
               
               Cow position:chr25:6940289-6940397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:232-382
               
               
               Cow position:chr25:12092820-12092671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:232-399
               
               
               Cow position:chr25:10303728-10303569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr25:14949614-14949775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr25:38987359-38987200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr25:15553100-15552937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr25:26156584-26156760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:232-426
               
               
               Cow position:chr25:15573594-15573395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-431
               
               
               Cow position:chr25:14944927-14945120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:232-441
               
               
               Cow position:chr25:7380637-7380847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:232-442
               
               
               Cow position:chr25:3744533-3744754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr25:6996986-6996777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 115

               
               
               Conread position:232-442
               
               
               Cow position:chr25:11841500-11841288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 139

               
               
               Conread position:232-443
               
               
               Cow position:chr25:3345999-3346204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:232-443
               
               
               Cow position:chr25:36873135-36873343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:232-461
               
               
               Cow position:chr25:9025324-9025089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):67, 85

               
               
               Conread position:232-463
               
               
               Cow position:chr25:22348257-22348497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-480
               
               
               Cow position:chr25:33457926-33457674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):187, 26

               
               
               Conread position:232-492
               
               
               Cow position:chr25:9843382-9843109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:232-492
               
               
               Cow position:chr25:13768159-13767904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr25:2414998-2414745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:232-494
               
               
               Cow position:chr25:3992982-3992716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):10, 236

               
               
               Conread position:232-494
               
               
               Cow position:chr25:7217018-7216763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):187, 69

               
               
               Conread position:232-494
               
               
               Cow position:chr25:13272770-13272500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr25:13621161-13621426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr25:21668449-21668179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr25:41150763-41151028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:232-496
               
               
               Cow position:chr25:4245866-4245615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:233-374
               
               
               Cow position:chr25:7864531-7864393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:233-376
               
               
               Cow position:chr25:18480860-18480721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:233-392
               
               
               Cow position:chr25:33272838-33272675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:233-403
               
               
               Cow position:chr25:30709145-30709318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-423
               
               
               Cow position:chr25:22734206-22734018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-424
               
               
               Cow position:chr25:22565766-22565947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:233-425
               
               
               Cow position:chr25:15349709-15349897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):183, 73

               
               
               Conread position:233-441
               
               
               Cow position:chr25:9616038-9615829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:233-467
               
               
               Cow position:chr25:13826631-13826399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:233-492
               
               
               Cow position:chr25:27595760-27595502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):186, 30

               
               
               Conread position:233-494
               
               
               Cow position:chr25:10643116-10643376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-494
               
               
               Cow position:chr25:12195020-12195284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:233-494
               
               
               Cow position:chr25:12509821-12510078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:233-494
               
               
               Cow position:chr25:22315404-22315132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):186, 86

               
               
               Conread position:234-345
               
               
               Cow position:chr25:6190851-6190745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-346
               
               
               Cow position:chr25:22577109-22577216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-351
               
               
               Cow position:chr25:28856637-28856521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:234-361
               
               
               Cow position:chr25:15463167-15463297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:234-399
               
               
               Cow position:chr25:15999351-15999517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:234-406
               
               
               Cow position:chr25:21547355-21547185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:234-416
               
               
               Cow position:chr25:13304396-13304580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:234-429
               
               
               Cow position:chr25:35902945-35902751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:234-442
               
               
               Cow position:chr25:1925413-1925601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:234-442
               
               
               Cow position:chr25:13325769-13325571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:234-442
               
               
               Cow position:chr25:30817091-30816880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr25:37331846-37332045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:234-458
               
               
               Cow position:chr25:36555500-36555714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):185, 52

               
               
               Conread position:234-490
               
               
               Cow position:chr25:10504136-10504401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:234-493
               
               
               Cow position:chr25:5846606-5846874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:234-493
               
               
               Cow position:chr25:21192742-21193000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr25:5921145-5920874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:234-494
               
               
               Cow position:chr25:14791953-14791687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):166, 87

               
               
               Conread position:234-494
               
               
               Cow position:chr25:26134245-26133974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr25:30278998-30279277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr25:36746249-36746515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:235-392
               
               
               Cow position:chr25:15447690-15447538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:235-410
               
               
               Cow position:chr25:4157049-4157222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:143
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr25:14457350-14457169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr25:36156009-36155838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:235-416
               
               
               Cow position:chr25:15423423-15423607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:235-417
               
               
               Cow position:chr25:9023943-9023768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr25:13823522-13823702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr25:33101415-33101588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:235-444
               
               
               Cow position:chr25:20085776-20085560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):100, 111

               
               
               Conread position:235-467
               
               
               Cow position:chr25:18760513-18760745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:235-468
               
               
               Cow position:chr25:11038561-11038318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:235-469
               
               
               Cow position:chr25:19679549-19679313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):188, 8

               
               
               Conread position:235-472
               
               
               Cow position:chr25:28423346-28423106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:235-474
               
               
               Cow position:chr25:22154229-22153986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):83, 184

               
               
               Conread position:235-494
               
               
               Cow position:chr25:1763282-1763023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr25:1823893-1824164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr25:10407213-10407482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:235-494
               
               
               Cow position:chr25:12609541-12609274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:235-494
               
               
               Cow position:chr25:17725233-17724989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 122

               
               
               Conread position:235-494
               
               
               Cow position:chr25:30319250-30319510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 135

               
               
               Conread position:235-494
               
               
               Cow position:chr25:30619267-30618997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:235-496
               
               
               Cow position:chr25:7306488-7306233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):217, 84

               
               
               Conread position:236-389
               
               
               Cow position:chr25:7185076-7185231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:236-414
               
               
               Cow position:chr25:32745532-32745358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):125, 78

               
               
               Conread position:238-386
               
               
               Cow position:chr25:4504585-4504726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr25:13223093-13222891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:238-442
               
               
               Cow position:chr25:16372748-16372542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:238-442
               
               
               Cow position:chr25:26072368-26072566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:238-492
               
               
               Cow position:chr25:17190559-17190809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):195, 66

               
               
               Conread position:238-494
               
               
               Cow position:chr25:7799747-7799486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:238-494
               
               
               Cow position:chr25:36835237-36835494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 85

               
               
               Conread position:239-399
               
               
               Cow position:chr25:9635513-9635365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:240-341
               
               
               Cow position:chr25:19301594-19301495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-365
               
               
               Cow position:chr25:14658932-14659051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-368
               
               
               Cow position:chr25:7012920-7012795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:240-378
               
               
               Cow position:chr25:13470518-13470658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr25:14164391-14164223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 123

               
               
               Conread position:240-406
               
               
               Cow position:chr25:14241154-14241325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 149

               
               
               Conread position:240-407
               
               
               Cow position:chr25:10817233-10817395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:240-407
               
               
               Cow position:chr25:14849459-14849626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:240-410
               
               
               Cow position:chr25:31705420-31705248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-411
               
               
               Cow position:chr25:14210169-14210006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr25:26269521-26269696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:240-413
               
               
               Cow position:chr25:28667857-28668025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:240-417
               
               
               Cow position:chr25:6928323-6928491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:240-417
               
               
               Cow position:chr25:10791626-10791797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-429
               
               
               Cow position:chr25:4192200-4192012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:240-442
               
               
               Cow position:chr25:12098030-12097831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:240-442
               
               
               Cow position:chr25:14225560-14225353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 125

               
               
               Conread position:240-442
               
               
               Cow position:chr25:17658805-17658602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:240-442
               
               
               Cow position:chr25:18810524-18810334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):179, 57

               
               
               Conread position:240-442
               
               
               Cow position:chr25:18929013-18929201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):179, 49

               
               
               Conread position:240-442
               
               
               Cow position:chr25:19584562-19584355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:240-442
               
               
               Cow position:chr25:31514377-31514172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-472
               
               
               Cow position:chr25:6292762-6292530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:240-473
               
               
               Cow position:chr25:7726858-7726624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 68

               
               
               Conread position:240-479
               
               
               Cow position:chr25:17403669-17403432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-486
               
               
               Cow position:chr25:22179103-22178861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:240-490
               
               
               Cow position:chr25:11780457-11780228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:240-493
               
               
               Cow position:chr25:14720925-14720680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):179, 75

               
               
               Conread position:240-494
               
               
               Cow position:chr25:4521648-4521903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr25:7641262-7641521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):149, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr25:7750640-7750383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):178, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr25:11436631-11436877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):179, 64

               
               
               Conread position:240-494
               
               
               Cow position:chr25:13380405-13380678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-494
               
               
               Cow position:chr25:15273857-15273606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):179, 60

               
               
               Conread position:240-494
               
               
               Cow position:chr25:20487242-20487508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-494
               
               
               Cow position:chr25:20785394-20785652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr25:26679420-26679161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr25:27801472-27801220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:240-494
               
               
               Cow position:chr25:35052425-35052688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:241-408
               
               
               Cow position:chr25:10856524-10856688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:241-489
               
               
               Cow position:chr25:19130046-19129792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:241-494
               
               
               Cow position:chr25:6682858-6683131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 243

               
               
               Conread position:241-494
               
               
               Cow position:chr25:9989910-9990165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):71, 211

               
               
               Conread position:241-494
               
               
               Cow position:chr25:17119936-17119678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):72, 121

               
               
               Conread position:241-494
               
               
               Cow position:chr25:33686490-33686748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr25:34978665-34978936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:242-399
               
               
               Cow position:chr25:447716-447868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-413
               
               
               Cow position:chr25:7684708-7684877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr25:11065948-11066126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr25:31657089-31657282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):174, 66

               
               
               Conread position:242-494
               
               
               Cow position:chr25:19363869-19364127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):177, 75

               
               
               Conread position:242-494
               
               
               Cow position:chr25:21893525-21893269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):177, 76

               
               
               Conread position:242-494
               
               
               Cow position:chr25:26306012-26306273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 105

               
               
               Conread position:242-496
               
               
               Cow position:chr25:16318959-16319212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:244-442
               
               
               Cow position:chr25:40904638-40904839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:244-496
               
               
               Cow position:chr25:8120970-8120713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):180, 142

               
               
               Conread position:245-409
               
               
               Cow position:chr25:21317230-21317397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:245-422
               
               
               Cow position:chr25:26061536-26061716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:245-442
               
               
               Cow position:chr25:35339002-35339199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):139, 63

               
               
               Conread position:245-484
               
               
               Cow position:chr25:21500854-21501109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:247-399
               
               
               Cow position:chr25:20244064-20244224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr25:18646766-18646602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:247-494
               
               
               Cow position:chr25:22756798-22756543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:248-388
               
               
               Cow position:chr25:36535233-36535374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:248-442
               
               
               Cow position:chr25:6259069-6258874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:248-494
               
               
               Cow position:chr25:13443222-13443480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr25:20023209-20023456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:248-494
               
               
               Cow position:chr25:32453245-32453465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:250-393
               
               
               Cow position:chr25:22571142-22570999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-400
               
               
               Cow position:chr25:7623005-7622853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:250-424
               
               
               Cow position:chr25:23323680-23323502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 169

               
               
               Conread position:250-492
               
               
               Cow position:chr25:36872546-36872297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:250-494
               
               
               Cow position:chr25:23244821-23245069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 67

               
               
               Conread position:251-494
               
               
               Cow position:chr25:11661648-11661883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:251-494
               
               
               Cow position:chr25:23779151-23779390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):168, 72

               
               
               Conread position:252-407
               
               
               Cow position:chr25:11855366-11855522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 137

               
               
               Conread position:252-494
               
               
               Cow position:chr25:2624975-2624740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):167, 62

               
               
               Conread position:253-442
               
               
               Cow position:chr25:9107353-9107533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):166, 14

               
               
               Conread position:253-484
               
               
               Cow position:chr25:16867425-16867183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:256-488
               
               
               Cow position:chr25:16065059-16064829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):163, 23

               
               
               Conread position:259-434
               
               
               Cow position:chr25:37637487-37637669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:259-440
               
               
               Cow position:chr25:6718080-6718253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:261-493
               
               
               Cow position:chr25:8157337-8157572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:263-493
               
               
               Cow position:chr25:788427-788197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):138, 75

               
               
               Conread position:265-399
               
               
               Cow position:chr25:7298725-7298867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:266-400
               
               
               Cow position:chr25:18568047-18568181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:266-494
               
               
               Cow position:chr25:15715039-15714806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):149, 51

               
               
               Conread position:270-406
               
               
               Cow position:chr25:6782023-6781890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:271-494
               
               
               Cow position:chr25:32277451-32277660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:291-494
               
               
               Cow position:chr25:23505191-23504980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:291-494
               
               
               Cow position:chr25:28187804-28188013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:297-494
               
               
               Cow position:chr25:36021454-36021256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:301-494
               
               
               Cow position:chr25:36762238-36762038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:302-407
               
               
               Cow position:chr25:32908070-32907965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-408
               
               
               Cow position:chr25:12899857-12899753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:302-431
               
               
               Cow position:chr25:14265086-14264958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-434
               
               
               Cow position:chr25:8223037-8222908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 37

               
               
               Conread position:302-488
               
               
               Cow position:chr25:40931405-40931214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):110, 183

               
               
               Conread position:302-493
               
               
               Cow position:chr25:22531413-22531215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:302-494
               
               
               Cow position:chr25:23745393-23745190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:303-442
               
               
               Cow position:chr25:15463716-15463578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:308-494
               
               
               Cow position:chr25:15254222-15254406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 137

               
               
               Conread position:309-442
               
               
               Cow position:chr25:30064789-30064922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:315-442
               
               
               Cow position:chr25:15218251-15218127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:319-431
               
               
               Cow position:chr25:34967394-34967507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-440
               
               
               Cow position:chr25:23998809-23998931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr25:7379037-7379217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):95, 170

               
               
               Conread position:329-493
               
               
               Cow position:chr25:4681331-4681165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:329-494
               
               
               Cow position:chr25:6961048-6961221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:331-492
               
               
               Cow position:chr25:6227138-6226971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:331-492
               
               
               Cow position:chr25:36019566-36019733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:331-494
               
               
               Cow position:chr25:14809376-14809213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:332-490
               
               
               Cow position:chr25:36036677-36036844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:208-392
               
               
               Cow position:chr26:8896343-8896531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:210-465
               
               
               Cow position:chr26:13828295-13828053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):209, 15

               
               
               Conread position:214-494
               
               
               Cow position:chr26:19591717-19591434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:216-442
               
               
               Cow position:chr26:12893196-12893417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):203, 11

               
               
               Conread position:217-388
               
               
               Cow position:chr26:12891734-12891906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:220-377
               
               
               Cow position:chr26:1894151-1894304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:222-406
               
               
               Cow position:chr26:754681-754864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:222-426
               
               
               Cow position:chr26:6487562-6487764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):138, 95

               
               
               Conread position:222-426
               
               
               Cow position:chr26:33037996-33038197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 84

               
               
               Conread position:223-352
               
               
               Cow position:chr26:15908533-15908663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:223-494
               
               
               Cow position:chr26:13978900-13979176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:223-494
               
               
               Cow position:chr26:24453681-24453954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):47, 60

               
               
               Conread position:224-399
               
               
               Cow position:chr26:17398803-17398630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:225-463
               
               
               Cow position:chr26:30127769-30128012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:225-492
               
               
               Cow position:chr26:830040-829757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 255

               
               
               Conread position:226-398
               
               
               Cow position:chr26:8187099-8186933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:226-414
               
               
               Cow position:chr26:17554394-17554577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:226-420
               
               
               Cow position:chr26:31062654-31062448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:226-479
               
               
               Cow position:chr26:34559946-34560203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:226-494
               
               
               Cow position:chr26:33856970-33857242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:227-378
               
               
               Cow position:chr26:13800735-13800585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:227-399
               
               
               Cow position:chr26:26504954-26504789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):139, 40

               
               
               Conread position:227-406
               
               
               Cow position:chr26:23602125-23602307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:227-409
               
               
               Cow position:chr26:32503122-32503300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 89

               
               
               Conread position:227-414
               
               
               Cow position:chr26:13018177-13018350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:227-414
               
               
               Cow position:chr26:33456305-33456481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-416
               
               
               Cow position:chr26:25225505-25225696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr26:12807081-12807264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:227-417
               
               
               Cow position:chr26:13705545-13705741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:227-426
               
               
               Cow position:chr26:33466224-33466412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):192, 36

               
               
               Conread position:227-431
               
               
               Cow position:chr26:34610962-34611160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):189, 77

               
               
               Conread position:227-442
               
               
               Cow position:chr26:6714073-6714290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 195

               
               
               Conread position:227-442
               
               
               Cow position:chr26:25526471-25526259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:227-442
               
               
               Cow position:chr26:32517243-32517446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-444
               
               
               Cow position:chr26:19146128-19145910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:227-445
               
               
               Cow position:chr26:2701760-2701977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-446
               
               
               Cow position:chr26:4854768-4854550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):114, 79

               
               
               Conread position:227-464
               
               
               Cow position:chr26:33074272-33074511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 90

               
               
               Conread position:227-478
               
               
               Cow position:chr26:7314852-7314586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:227-490
               
               
               Cow position:chr26:7314868-7315148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:227-492
               
               
               Cow position:chr26:12940631-12940359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:227-493
               
               
               Cow position:chr26:19459921-19459638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:227-494
               
               
               Cow position:chr26:22249264-22249525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:227-494
               
               
               Cow position:chr26:32566233-32565968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr26:32815564-32815840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 125

               
               
               Conread position:227-494
               
               
               Cow position:chr26:33253092-33253367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):189, 91

               
               
               Conread position:227-495
               
               
               Cow position:chr26:18530011-18529732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:228-398
               
               
               Cow position:chr26:16795989-16796155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr26:20846968-20846799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:228-417
               
               
               Cow position:chr26:29900837-29901025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-481
               
               
               Cow position:chr26:34724652-34724898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:228-488
               
               
               Cow position:chr26:8307309-8307566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:228-494
               
               
               Cow position:chr26:14905593-14905859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):191, 86

               
               
               Conread position:228-494
               
               
               Cow position:chr26:23141877-23142155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:229-365
               
               
               Cow position:chr26:10752518-10752376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr26:28202533-28202723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:229-494
               
               
               Cow position:chr26:34060558-34060286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-345
               
               
               Cow position:chr26:30955368-30955253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:230-355
               
               
               Cow position:chr26:32518700-32518569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:230-381
               
               
               Cow position:chr26:26919758-26919607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:230-385
               
               
               Cow position:chr26:33728418-33728576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-386
               
               
               Cow position:chr26:13292895-13292738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:230-391
               
               
               Cow position:chr26:10220001-10220166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:230-391
               
               
               Cow position:chr26:16797745-16797905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:230-391
               
               
               Cow position:chr26:31875982-31876148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:230-396
               
               
               Cow position:chr26:21320167-21320003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:230-397
               
               
               Cow position:chr26:28612-28775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr26:31711843-31712014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr26:10502946-10502776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:230-410
               
               
               Cow position:chr26:27482341-27482523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-414
               
               
               Cow position:chr26:21279740-21279922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr26:32688775-32688583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr26:26244947-26245132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:230-417
               
               
               Cow position:chr26:3192226-3192407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr26:5833159-5832972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:230-417
               
               
               Cow position:chr26:6823381-6823195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:230-417
               
               
               Cow position:chr26:9662007-9662192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 163

               
               
               Conread position:230-417
               
               
               Cow position:chr26:21822826-21823009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:230-417
               
               
               Cow position:chr26:23481030-23481215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr26:27847245-27847056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr26:30298788-30298976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:230-424
               
               
               Cow position:chr26:32655386-32655578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:230-426
               
               
               Cow position:chr26:10700682-10700876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:230-427
               
               
               Cow position:chr26:8341708-8341521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:230-427
               
               
               Cow position:chr26:9595878-9596078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-431
               
               
               Cow position:chr26:18825062-18825262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):189, 75

               
               
               Conread position:230-432
               
               
               Cow position:chr26:35553634-35553431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:230-438
               
               
               Cow position:chr26:21352120-21351917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:230-442
               
               
               Cow position:chr26:218235-218447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:230-442
               
               
               Cow position:chr26:4363521-4363310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:230-442
               
               
               Cow position:chr26:7224132-7224332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):111, 79

               
               
               Conread position:230-442
               
               
               Cow position:chr26:9099312-9099522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 88

               
               
               Conread position:230-442
               
               
               Cow position:chr26:34026812-34027025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):82, 197

               
               
               Conread position:230-443
               
               
               Cow position:chr26:35449277-35449072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):141, 37

               
               
               Conread position:230-467
               
               
               Cow position:chr26:107262-107012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:230-470
               
               
               Cow position:chr26:14293371-14293134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:230-475
               
               
               Cow position:chr26:34581035-34580774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:230-490
               
               
               Cow position:chr26:4807779-4807518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:230-490
               
               
               Cow position:chr26:34314900-34314646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:230-492
               
               
               Cow position:chr26:25663327-25663584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr26:647501-647774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr26:3707021-3706747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr26:4513351-4513612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:230-494
               
               
               Cow position:chr26:7687021-7687288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr26:9492140-9491876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr26:12144895-12145168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 116

               
               
               Conread position:230-494
               
               
               Cow position:chr26:12964460-12964744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 184

               
               
               Conread position:230-494
               
               
               Cow position:chr26:21636830-21637088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-494
               
               
               Cow position:chr26:30861527-30861794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:230-495
               
               
               Cow position:chr26:14481345-14481602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:231-355
               
               
               Cow position:chr26:16423814-16423690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-382
               
               
               Cow position:chr26:13022683-13022533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-382
               
               
               Cow position:chr26:33114720-33114867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:231-410
               
               
               Cow position:chr26:5233188-5233017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:231-411
               
               
               Cow position:chr26:16585648-16585477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:231-424
               
               
               Cow position:chr26:2930033-2930227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:231-492
               
               
               Cow position:chr26:8306619-8306349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):126, 92

               
               
               Conread position:231-494
               
               
               Cow position:chr26:3071761-3072013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 70

               
               
               Conread position:231-494
               
               
               Cow position:chr26:24240900-24240628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:231-494
               
               
               Cow position:chr26:31137245-31137502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:232-351
               
               
               Cow position:chr26:18651866-18651748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:232-379
               
               
               Cow position:chr26:8257024-8256873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:232-396
               
               
               Cow position:chr26:11800426-11800270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-426
               
               
               Cow position:chr26:13862819-13863008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-431
               
               
               Cow position:chr26:1328646-1328835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:232-441
               
               
               Cow position:chr26:10974348-10974142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 61

               
               
               Conread position:232-442
               
               
               Cow position:chr26:16435431-16435646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:232-447
               
               
               Cow position:chr26:10608798-10608588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:232-480
               
               
               Cow position:chr26:17057894-17057647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):160, 71

               
               
               Conread position:232-480
               
               
               Cow position:chr26:30254398-30254663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:232-487
               
               
               Cow position:chr26:19636509-19636249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:232-490
               
               
               Cow position:chr26:6515052-6514798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):187, 72

               
               
               Conread position:232-492
               
               
               Cow position:chr26:20291473-20291738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-493
               
               
               Cow position:chr26:22033697-22033435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):189, 36

               
               
               Conread position:232-494
               
               
               Cow position:chr26:19446355-19446077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:232-494
               
               
               Cow position:chr26:23925063-23924799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):187, 69

               
               
               Conread position:232-494
               
               
               Cow position:chr26:28251373-28251102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 55

               
               
               Conread position:232-494
               
               
               Cow position:chr26:33201851-33202117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 91

               
               
               Conread position:233-377
               
               
               Cow position:chr26:12537325-12537464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:233-407
               
               
               Cow position:chr26:23106212-23106382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:233-414
               
               
               Cow position:chr26:31382533-31382359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):106, 81

               
               
               Conread position:233-417
               
               
               Cow position:chr26:12028015-12028201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:233-422
               
               
               Cow position:chr26:25394260-25394070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:233-465
               
               
               Cow position:chr26:4584993-4585224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):186, 154

               
               
               Conread position:233-479
               
               
               Cow position:chr26:14309292-14309055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):164, 14

               
               
               Conread position:233-494
               
               
               Cow position:chr26:9839326-9839587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:233-494
               
               
               Cow position:chr26:23671635-23671366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:233-494
               
               
               Cow position:chr26:26887919-26888181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:234-382
               
               
               Cow position:chr26:35678066-35677912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:234-389
               
               
               Cow position:chr26:25029754-25029597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr26:28244962-28245118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-407
               
               
               Cow position:chr26:5407197-5407025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:234-408
               
               
               Cow position:chr26:16166476-16166650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:234-408
               
               
               Cow position:chr26:31173490-31173314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr26:1041220-1041041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:234-417
               
               
               Cow position:chr26:8478661-8478836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:234-431
               
               
               Cow position:chr26:15132858-15132658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:234-442
               
               
               Cow position:chr26:7642356-7642563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 80

               
               
               Conread position:234-442
               
               
               Cow position:chr26:23112257-23112048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):6, 91

               
               
               Conread position:234-467
               
               
               Cow position:chr26:20260799-20260565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:234-472
               
               
               Cow position:chr26:17212414-17212168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:234-490
               
               
               Cow position:chr26:23096975-23097227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):216, 147

               
               
               Conread position:234-494
               
               
               Cow position:chr26:8811348-8811082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-494
               
               
               Cow position:chr26:11964333-11964075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:234-496
               
               
               Cow position:chr26:6037204-6037485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:234-496
               
               
               Cow position:chr26:6794364-6794097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:235-382
               
               
               Cow position:chr26:32831360-32831511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:235-399
               
               
               Cow position:chr26:21243303-21243149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:235-410
               
               
               Cow position:chr26:25407598-25407437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr26:28444675-28444853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-424
               
               
               Cow position:chr26:8811691-8811500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:235-442
               
               
               Cow position:chr26:7148084-7148295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:235-445
               
               
               Cow position:chr26:28247065-28246848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:235-471
               
               
               Cow position:chr26:18872829-18872592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-490
               
               
               Cow position:chr26:10764431-10764171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr26:586656-586924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:235-494
               
               
               Cow position:chr26:9604772-9604515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:235-494
               
               
               Cow position:chr26:13974926-13975181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 74

               
               
               Conread position:235-494
               
               
               Cow position:chr26:20770066-20769801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):184, 12

               
               
               Conread position:235-494
               
               
               Cow position:chr26:21418236-21418500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:235-494
               
               
               Cow position:chr26:32834357-32834621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):81, 198

               
               
               Conread position:236-494
               
               
               Cow position:chr26:33112171-33112430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 8

               
               
               Conread position:237-494
               
               
               Cow position:chr26:16784041-16783774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:238-390
               
               
               Cow position:chr26:2994486-2994636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:238-398
               
               
               Cow position:chr26:26407578-26407735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:238-442
               
               
               Cow position:chr26:19671691-19671488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:238-442
               
               
               Cow position:chr26:22901040-22901251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 180

               
               
               Conread position:238-494
               
               
               Cow position:chr26:13802322-13802065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 76

               
               
               Conread position:238-494
               
               
               Cow position:chr26:32897666-32897919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 82

               
               
               Conread position:239-384
               
               
               Cow position:chr26:8694933-8695074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:239-439
               
               
               Cow position:chr26:32353509-32353707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):180, 64

               
               
               Conread position:239-494
               
               
               Cow position:chr26:32601568-32601304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr26:24520890-24521035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 69

               
               
               Conread position:240-391
               
               
               Cow position:chr26:5749729-5749876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 80

               
               
               Conread position:240-398
               
               
               Cow position:chr26:22798942-22799101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr26:3930319-3930495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:240-425
               
               
               Cow position:chr26:34114476-34114292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 91

               
               
               Conread position:240-433
               
               
               Cow position:chr26:33891454-33891258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:240-435
               
               
               Cow position:chr26:32981259-32981457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-442
               
               
               Cow position:chr26:3757998-3757799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:240-442
               
               
               Cow position:chr26:4167138-4167343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:240-442
               
               
               Cow position:chr26:5666252-5666058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:240-442
               
               
               Cow position:chr26:11672512-11672307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:240-484
               
               
               Cow position:chr26:32830295-32830045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:240-492
               
               
               Cow position:chr26:26950250-26950498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):203, 34

               
               
               Conread position:240-493
               
               
               Cow position:chr26:14175505-14175234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:240-493
               
               
               Cow position:chr26:28423497-28423239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):195, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr26:16550199-16549937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:240-494
               
               
               Cow position:chr26:22892236-22892495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr26:23848584-23848848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr26:32035254-32035488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):143, 44

               
               
               Conread position:240-495
               
               
               Cow position:chr26:11875013-11875258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-496
               
               
               Cow position:chr26:9535725-9535467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:241-382
               
               
               Cow position:chr26:32842573-32842716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:241-399
               
               
               Cow position:chr26:11884500-11884354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr26:5168603-5168408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr26:23623833-23624034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 95

               
               
               Conread position:241-490
               
               
               Cow position:chr26:5836607-5836864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr26:31888939-31888743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:242-494
               
               
               Cow position:chr26:14174514-14174256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr26:20824913-20825157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):201, 72

               
               
               Conread position:242-494
               
               
               Cow position:chr26:31633941-31633681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:243-490
               
               
               Cow position:chr26:10146105-10145857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:245-392
               
               
               Cow position:chr26:7085554-7085700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:245-417
               
               
               Cow position:chr26:11538742-11538568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:246-492
               
               
               Cow position:chr26:29889309-29889547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:247-414
               
               
               Cow position:chr26:16801190-16801019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 133

               
               
               Conread position:247-424
               
               
               Cow position:chr26:28244036-28243857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:248-398
               
               
               Cow position:chr26:27768471-27768322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:248-442
               
               
               Cow position:chr26:9501913-9501719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:248-488
               
               
               Cow position:chr26:35704577-35704345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):171, 54

               
               
               Conread position:249-426
               
               
               Cow position:chr26:7115186-7115362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:249-496
               
               
               Cow position:chr26:10965383-10965643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:250-464
               
               
               Cow position:chr26:32563551-32563335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:251-494
               
               
               Cow position:chr26:27491295-27491549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:253-405
               
               
               Cow position:chr26:29897382-29897235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:253-442
               
               
               Cow position:chr26:22348812-22349002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):87, 93

               
               
               Conread position:255-442
               
               
               Cow position:chr26:29663957-29664149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:261-395
               
               
               Cow position:chr26:7358721-7358856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:263-417
               
               
               Cow position:chr26:33175524-33175679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:266-442
               
               
               Cow position:chr26:32670313-32670485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:266-492
               
               
               Cow position:chr26:33392587-33392347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:266-494
               
               
               Cow position:chr26:33736370-33736601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:267-399
               
               
               Cow position:chr26:34955598-34955728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:271-494
               
               
               Cow position:chr26:31903350-31903118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:273-390
               
               
               Cow position:chr26:23109209-23109092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:273-429
               
               
               Cow position:chr26:7525030-7525180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):142, 26

               
               
               Conread position:273-494
               
               
               Cow position:chr26:6865203-6864968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:280-494
               
               
               Cow position:chr26:19774128-19774349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):139, 8

               
               
               Conread position:284-399
               
               
               Cow position:chr26:27407514-27407403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:295-494
               
               
               Cow position:chr26:31605564-31605358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:297-494
               
               
               Cow position:chr26:23315929-23315722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:301-492
               
               
               Cow position:chr26:22152378-22152182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:301-494
               
               
               Cow position:chr26:8353119-8352914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:301-494
               
               
               Cow position:chr26:8699896-8700095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:302-442
               
               
               Cow position:chr26:26329056-26328923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:302-460
               
               
               Cow position:chr26:6337937-6337776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):117, 8

               
               
               Conread position:303-442
               
               
               Cow position:chr26:33242041-33241899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:304-442
               
               
               Cow position:chr26:13292668-13292529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr26:677832-678029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr26:13020997-13021193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:324-450
               
               
               Cow position:chr26:32362104-32361975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:326-493
               
               
               Cow position:chr26:8643068-8642898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:329-494
               
               
               Cow position:chr26:32652610-32652782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:185-492
               
               
               Cow position:chr27:7213029-7212692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):21, 250

               
               
               Conread position:208-494
               
               
               Cow position:chr27:5553200-5553492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:212-494
               
               
               Cow position:chr27:26999687-26999400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:213-493
               
               
               Cow position:chr27:27460844-27460555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:216-316
               
               
               Cow position:chr27:154166-154262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:216-386
               
               
               Cow position:chr27:28192874-28192709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:216-413
               
               
               Cow position:chr27:27450149-27449952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:218-493
               
               
               Cow position:chr27:20897280-20897003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):201, 23

               
               
               Conread position:219-417
               
               
               Cow position:chr27:19452734-19452939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:219-494
               
               
               Cow position:chr27:19387758-19388035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:220-349
               
               
               Cow position:chr27:30884979-30885107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:220-442
               
               
               Cow position:chr27:26112177-26111951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:220-456
               
               
               Cow position:chr27:26087062-26087290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):204, 21

               
               
               Conread position:220-494
               
               
               Cow position:chr27:426714-426989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 10

               
               
               Conread position:220-494
               
               
               Cow position:chr27:14670638-14670367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):199, 5

               
               
               Conread position:221-494
               
               
               Cow position:chr27:26853608-26853336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:222-402
               
               
               Cow position:chr27:25000224-25000038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:222-411
               
               
               Cow position:chr27:18688670-18688478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:222-431
               
               
               Cow position:chr27:9504296-9504503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:222-442
               
               
               Cow position:chr27:20584724-20584493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):76, 127

               
               
               Conread position:222-494
               
               
               Cow position:chr27:21990887-21991175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:222-494
               
               
               Cow position:chr27:23560286-23560009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 101

               
               
               Conread position:223-389
               
               
               Cow position:chr27:26314377-26314214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:223-424
               
               
               Cow position:chr27:27438764-27438562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 140

               
               
               Conread position:223-442
               
               
               Cow position:chr27:15315267-15315480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:223-448
               
               
               Cow position:chr27:6330376-6330613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:223-494
               
               
               Cow position:chr27:31219017-31219273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):212, 45

               
               
               Conread position:224-389
               
               
               Cow position:chr27:21448079-21447920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:224-411
               
               
               Cow position:chr27:20266481-20266294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:224-431
               
               
               Cow position:chr27:19576578-19576371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:225-378
               
               
               Cow position:chr27:14965862-14965708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:225-399
               
               
               Cow position:chr27:22102895-22102724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:225-417
               
               
               Cow position:chr27:18491310-18491493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:225-418
               
               
               Cow position:chr27:24952206-24952017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:225-484
               
               
               Cow position:chr27:15865965-15866227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:225-490
               
               
               Cow position:chr27:30869006-30868723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:225-494
               
               
               Cow position:chr27:27020349-27020083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:226-442
               
               
               Cow position:chr27:15332542-15332332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:226-494
               
               
               Cow position:chr27:7412141-7412406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 91

               
               
               Conread position:227-355
               
               
               Cow position:chr27:26315393-26315265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:227-375
               
               
               Cow position:chr27:23527751-23527606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-383
               
               
               Cow position:chr27:28177977-28177813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:227-385
               
               
               Cow position:chr27:22150945-22150789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-396
               
               
               Cow position:chr27:27405320-27405150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:227-398
               
               
               Cow position:chr27:24755361-24755523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr27:29614790-29614961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):98, 90

               
               
               Conread position:227-405
               
               
               Cow position:chr27:11528676-11528856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr27:21101544-21101364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:227-406
               
               
               Cow position:chr27:23632357-23632526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:227-407
               
               
               Cow position:chr27:31153806-31153630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:227-411
               
               
               Cow position:chr27:14343687-14343517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):161, 51

               
               
               Conread position:227-411
               
               
               Cow position:chr27:23232660-23232847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 137

               
               
               Conread position:227-411
               
               
               Cow position:chr27:26980216-26980031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:227-414
               
               
               Cow position:chr27:3518250-3518439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):95, 81

               
               
               Conread position:227-414
               
               
               Cow position:chr27:13411620-13411435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:227-414
               
               
               Cow position:chr27:20484481-20484664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr27:26236080-26236260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:227-414
               
               
               Cow position:chr27:29236306-29236498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:227-417
               
               
               Cow position:chr27:20081383-20081192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:227-422
               
               
               Cow position:chr27:4544605-4544406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:227-426
               
               
               Cow position:chr27:12284741-12284941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:227-441
               
               
               Cow position:chr27:18987968-18988182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 194

               
               
               Conread position:227-442
               
               
               Cow position:chr27:6162655-6162447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr27:7425440-7425225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 90

               
               
               Conread position:227-442
               
               
               Cow position:chr27:7935407-7935193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):166, 26

               
               
               Conread position:227-442
               
               
               Cow position:chr27:11435579-11435359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:227-442
               
               
               Cow position:chr27:18435381-18435170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-442
               
               
               Cow position:chr27:20514573-20514782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:227-442
               
               
               Cow position:chr27:26323190-26323411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):82, 208

               
               
               Conread position:227-443
               
               
               Cow position:chr27:29164525-29164734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-449
               
               
               Cow position:chr27:6241445-6241221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:227-484
               
               
               Cow position:chr27:31210297-31210559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:227-485
               
               
               Cow position:chr27:11982900-11982636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:227-490
               
               
               Cow position:chr27:8962492-8962239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-490
               
               
               Cow position:chr27:23128214-23128473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:227-493
               
               
               Cow position:chr27:16965323-16965593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):76, 209

               
               
               Conread position:227-493
               
               
               Cow position:chr27:27442411-27442147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:227-494
               
               
               Cow position:chr27:8353243-8353495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:227-494
               
               
               Cow position:chr27:16284236-16284498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:227-494
               
               
               Cow position:chr27:19500488-19500214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-494
               
               
               Cow position:chr27:19932814-19933086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 242

               
               
               Conread position:227-494
               
               
               Cow position:chr27:29798700-29798975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:227-494
               
               
               Cow position:chr27:30890049-30890308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:228-388
               
               
               Cow position:chr27:20561338-20561490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-417
               
               
               Cow position:chr27:23957269-23957458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:228-442
               
               
               Cow position:chr27:7731525-7731294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:228-494
               
               
               Cow position:chr27:591020-590739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:228-494
               
               
               Cow position:chr27:26425972-26426228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):218, 42

               
               
               Conread position:228-496
               
               
               Cow position:chr27:20327246-20327516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 214

               
               
               Conread position:229-442
               
               
               Cow position:chr27:19557140-19557348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:229-445
               
               
               Cow position:chr27:31248856-31248645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:229-490
               
               
               Cow position:chr27:15865360-15865628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):190, 85

               
               
               Conread position:229-492
               
               
               Cow position:chr27:2957167-2957423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):184, 89

               
               
               Conread position:229-494
               
               
               Cow position:chr27:15378732-15378455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:230-353
               
               
               Cow position:chr27:14269579-14269452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-365
               
               
               Cow position:chr27:29458081-29458217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr27:19653826-19653678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:230-380
               
               
               Cow position:chr27:30458878-30458730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:230-390
               
               
               Cow position:chr27:28062443-28062288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:230-391
               
               
               Cow position:chr27:26154068-26154232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:230-395
               
               
               Cow position:chr27:25790054-25790212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-396
               
               
               Cow position:chr27:29526712-29526879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:230-397
               
               
               Cow position:chr27:30991213-30991385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 136

               
               
               Conread position:230-406
               
               
               Cow position:chr27:13801556-13801738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:230-406
               
               
               Cow position:chr27:29246393-29246221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:230-407
               
               
               Cow position:chr27:31183324-31183503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:230-412
               
               
               Cow position:chr27:27606543-27606364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:230-413
               
               
               Cow position:chr27:3498307-3498484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr27:17908513-17908325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:230-414
               
               
               Cow position:chr27:21201941-21202127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr27:27828105-27827916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr27:20591678-20591865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 147

               
               
               Conread position:230-417
               
               
               Cow position:chr27:11507513-11507326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr27:18752598-18752793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 146

               
               
               Conread position:230-417
               
               
               Cow position:chr27:22513930-22513740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr27:22730940-22730744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr27:22792590-22792769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr27:27648564-27648380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-424
               
               
               Cow position:chr27:4414064-4413876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:230-426
               
               
               Cow position:chr27:4398734-4398544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):190, 69

               
               
               Conread position:230-427
               
               
               Cow position:chr27:13181655-13181859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:230-431
               
               
               Cow position:chr27:31169354-31169158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:230-439
               
               
               Cow position:chr27:24303694-24303907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:230-440
               
               
               Cow position:chr27:6106458-6106661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:230-442
               
               
               Cow position:chr27:13940799-13940594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr27:26437369-26437158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr27:29319156-29319374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:230-445
               
               
               Cow position:chr27:672415-672629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:230-471
               
               
               Cow position:chr27:24440466-24440234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:230-485
               
               
               Cow position:chr27:13639236-13638982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 192

               
               
               Conread position:230-490
               
               
               Cow position:chr27:26852831-26852575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:230-490
               
               
               Cow position:chr27:29831957-29831681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-490
               
               
               Cow position:chr27:30872306-30872042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:230-492
               
               
               Cow position:chr27:12425039-12425308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:230-492
               
               
               Cow position:chr27:24007216-24007476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:230-493
               
               
               Cow position:chr27:28896629-28896900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 185

               
               
               Conread position:230-494
               
               
               Cow position:chr27:1353332-1353608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:230-494
               
               
               Cow position:chr27:2886087-2885811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:230-494
               
               
               Cow position:chr27:6290225-6290493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr27:6924833-6925110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:230-494
               
               
               Cow position:chr27:13875484-13875752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:230-494
               
               
               Cow position:chr27:22171053-22171321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 71

               
               
               Conread position:230-494
               
               
               Cow position:chr27:28190440-28190193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr27:29431227-29431481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):235, 73

               
               
               Conread position:230-494
               
               
               Cow position:chr27:30914758-30915028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):82, 180

               
               
               Conread position:230-496
               
               
               Cow position:chr27:237003-237292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 161

               
               
               Conread position:231-340
               
               
               Cow position:chr27:19508567-19508674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-341
               
               
               Cow position:chr27:18749168-18749058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-396
               
               
               Cow position:chr27:67989-68142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr27:21143325-21143151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr27:21660888-21661053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-398
               
               
               Cow position:chr27:29388424-29388590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:231-408
               
               
               Cow position:chr27:30884780-30884956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:231-411
               
               
               Cow position:chr27:23477698-23477877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:231-411
               
               
               Cow position:chr27:23495943-23495778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr27:27529062-27528886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:231-417
               
               
               Cow position:chr27:26565547-26565725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:231-434
               
               
               Cow position:chr27:6282585-6282790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:231-444
               
               
               Cow position:chr27:26173250-26173462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 117

               
               
               Conread position:231-451
               
               
               Cow position:chr27:19546769-19546544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):72, 187

               
               
               Conread position:231-469
               
               
               Cow position:chr27:16512415-16512180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):191, 61

               
               
               Conread position:231-487
               
               
               Cow position:chr27:4944754-4944499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):188, 73

               
               
               Conread position:231-489
               
               
               Cow position:chr27:26617167-26617416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:231-490
               
               
               Cow position:chr27:24446385-24446138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):190, 16

               
               
               Conread position:231-493
               
               
               Cow position:chr27:11561527-11561796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:231-494
               
               
               Cow position:chr27:3306538-3306791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):188, 68

               
               
               Conread position:231-494
               
               
               Cow position:chr27:7304854-7304595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:231-494
               
               
               Cow position:chr27:10979612-10979884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:231-494
               
               
               Cow position:chr27:17472566-17472830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:231-494
               
               
               Cow position:chr27:20628811-20629083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):37, 243

               
               
               Conread position:231-494
               
               
               Cow position:chr27:23594071-23594343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 160

               
               
               Conread position:231-494
               
               
               Cow position:chr27:28206556-28206821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):212, 87

               
               
               Conread position:232-316
               
               
               Cow position:chr27:11466763-11466679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-360
               
               
               Cow position:chr27:18521802-18521924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:232-384
               
               
               Cow position:chr27:19991902-19992053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:232-388
               
               
               Cow position:chr27:3698920-3698764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr27:27058652-27058484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:232-406
               
               
               Cow position:chr27:8062599-8062424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:232-407
               
               
               Cow position:chr27:11145635-11145806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-411
               
               
               Cow position:chr27:1184420-1184246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr27:26939831-26940013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:232-416
               
               
               Cow position:chr27:21951227-21951042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-425
               
               
               Cow position:chr27:24358093-24358279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):187, 81

               
               
               Conread position:232-426
               
               
               Cow position:chr27:8630120-8629924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 57

               
               
               Conread position:232-426
               
               
               Cow position:chr27:20485798-20486004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 146

               
               
               Conread position:232-430
               
               
               Cow position:chr27:19741638-19741457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-430
               
               
               Cow position:chr27:22180013-22179818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:232-442
               
               
               Cow position:chr27:9977439-9977648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:232-456
               
               
               Cow position:chr27:16514096-16513879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:232-467
               
               
               Cow position:chr27:18882410-18882641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-482
               
               
               Cow position:chr27:31004695-31004951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):183, 34

               
               
               Conread position:232-483
               
               
               Cow position:chr27:27856092-27856343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):183, 29

               
               
               Conread position:232-493
               
               
               Cow position:chr27:15409272-15409014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):187, 71

               
               
               Conread position:232-494
               
               
               Cow position:chr27:7649837-7649563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:232-494
               
               
               Cow position:chr27:15453966-15454236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:232-494
               
               
               Cow position:chr27:17397698-17397430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:232-494
               
               
               Cow position:chr27:22035618-22035354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:232-494
               
               
               Cow position:chr27:22547635-22547387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):183, 90

               
               
               Conread position:232-494
               
               
               Cow position:chr27:23510728-23511011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):90, 164

               
               
               Conread position:232-494
               
               
               Cow position:chr27:23918281-23918007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr27:26226535-26226269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):187, 76

               
               
               Conread position:232-494
               
               
               Cow position:chr27:26424824-26424565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:233-382
               
               
               Cow position:chr27:2934262-2934406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:233-399
               
               
               Cow position:chr27:10598741-10598908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:233-414
               
               
               Cow position:chr27:26118251-26118434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:233-431
               
               
               Cow position:chr27:13204219-13204411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:233-442
               
               
               Cow position:chr27:16088545-16088770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 126

               
               
               Conread position:233-442
               
               
               Cow position:chr27:16705007-16705214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):186, 74

               
               
               Conread position:233-442
               
               
               Cow position:chr27:24223709-24223915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):167, 30

               
               
               Conread position:233-461
               
               
               Cow position:chr27:262090-262315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:233-481
               
               
               Cow position:chr27:26434059-26433802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:233-490
               
               
               Cow position:chr27:22439891-22440157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:233-493
               
               
               Cow position:chr27:22220304-22220576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr27:16103565-16103829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 130

               
               
               Conread position:233-494
               
               
               Cow position:chr27:26643457-26643707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:233-494
               
               
               Cow position:chr27:26984108-26984370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):180, 57

               
               
               Conread position:233-494
               
               
               Cow position:chr27:27245608-27245332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:233-494
               
               
               Cow position:chr27:27389273-27388997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr27:28932047-28931773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):178, 14

               
               
               Conread position:233-496
               
               
               Cow position:chr27:21669353-21669096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:234-380
               
               
               Cow position:chr27:30441457-30441605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:234-382
               
               
               Cow position:chr27:27012451-27012601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-396
               
               
               Cow position:chr27:4195310-4195463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr27:19074268-19074105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):83, 123

               
               
               Conread position:234-397
               
               
               Cow position:chr27:22583498-22583664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:234-399
               
               
               Cow position:chr27:20612276-20612443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:234-404
               
               
               Cow position:chr27:18873808-18873972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr27:22267975-22268155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr27:22748083-22748254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:234-414
               
               
               Cow position:chr27:26400962-26400787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr27:31515798-31515615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:234-417
               
               
               Cow position:chr27:11208802-11208617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:234-417
               
               
               Cow position:chr27:17933678-17933863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:234-417
               
               
               Cow position:chr27:20048392-20048571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:234-417
               
               
               Cow position:chr27:26121513-26121697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:234-417
               
               
               Cow position:chr27:29613732-29613551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:234-426
               
               
               Cow position:chr27:16047732-16047551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:234-437
               
               
               Cow position:chr27:31498540-31498737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:234-438
               
               
               Cow position:chr27:15867148-15867347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):101, 86

               
               
               Conread position:234-442
               
               
               Cow position:chr27:212706-212920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr27:8790987-8790778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):167, 57

               
               
               Conread position:234-442
               
               
               Cow position:chr27:20719040-20719251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 91

               
               
               Conread position:234-442
               
               
               Cow position:chr27:25809761-25809556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:234-442
               
               
               Cow position:chr27:27558751-27558541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 149

               
               
               Conread position:234-443
               
               
               Cow position:chr27:11133843-11134048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-443
               
               
               Cow position:chr27:11323082-11323294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-474
               
               
               Cow position:chr27:26883504-26883259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:234-483
               
               
               Cow position:chr27:24477182-24477426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:234-490
               
               
               Cow position:chr27:20354355-20354601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):88, 115

               
               
               Conread position:234-493
               
               
               Cow position:chr27:2592292-2592568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-493
               
               
               Cow position:chr27:6499813-6500078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 247

               
               
               Conread position:234-494
               
               
               Cow position:chr27:15669019-15668749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 260

               
               
               Conread position:234-494
               
               
               Cow position:chr27:20749247-20748986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr27:26509400-26509140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:234-494
               
               
               Cow position:chr27:27003503-27003253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:234-496
               
               
               Cow position:chr27:6541390-6541652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-496
               
               
               Cow position:chr27:20828949-20828685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):185, 33

               
               
               Conread position:234-496
               
               
               Cow position:chr27:31386875-31386615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:235-385
               
               
               Cow position:chr27:21054213-21054365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:235-386
               
               
               Cow position:chr27:4487024-4486871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:235-392
               
               
               Cow position:chr27:19805940-19805784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-397
               
               
               Cow position:chr27:12948041-12947877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:235-397
               
               
               Cow position:chr27:19779633-19779794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 26

               
               
               Conread position:235-399
               
               
               Cow position:chr27:15434089-15434244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:235-399
               
               
               Cow position:chr27:22602931-22603105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr27:16246564-16246728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr27:28002047-28001881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:235-414
               
               
               Cow position:chr27:5539937-5539761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:235-417
               
               
               Cow position:chr27:4390501-4390321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:235-417
               
               
               Cow position:chr27:11464677-11464493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr27:29494142-29493963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:235-424
               
               
               Cow position:chr27:28015979-28015790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 168

               
               
               Conread position:235-427
               
               
               Cow position:chr27:28253992-28254186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 140

               
               
               Conread position:235-441
               
               
               Cow position:chr27:28496614-28496410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:235-443
               
               
               Cow position:chr27:10404361-10404152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-444
               
               
               Cow position:chr27:31151140-31151346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):190, 20

               
               
               Conread position:235-474
               
               
               Cow position:chr27:19496635-19496878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:235-488
               
               
               Cow position:chr27:19508768-19509030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:235-492
               
               
               Cow position:chr27:12515950-12516212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:235-493
               
               
               Cow position:chr27:16786587-16786846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):181, 74

               
               
               Conread position:235-494
               
               
               Cow position:chr27:4720370-4720091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr27:18543744-18544015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 106

               
               
               Conread position:235-494
               
               
               Cow position:chr27:26794028-26793767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:235-494
               
               
               Cow position:chr27:28922139-28921876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:236-392
               
               
               Cow position:chr27:23760221-23760069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:236-442
               
               
               Cow position:chr27:26481440-26481232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:237-494
               
               
               Cow position:chr27:23859918-23860189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:238-441
               
               
               Cow position:chr27:17102659-17102858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):181, 83

               
               
               Conread position:238-442
               
               
               Cow position:chr27:29593869-29593666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:238-494
               
               
               Cow position:chr27:25151848-25152103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 127

               
               
               Conread position:239-336
               
               
               Cow position:chr27:23996361-23996263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:239-417
               
               
               Cow position:chr27:11994108-11993929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:239-446
               
               
               Cow position:chr27:22489033-22489245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:240-382
               
               
               Cow position:chr27:16275919-16275777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:240-389
               
               
               Cow position:chr27:26467800-26467650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 144

               
               
               Conread position:240-392
               
               
               Cow position:chr27:18646388-18646241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:240-397
               
               
               Cow position:chr27:18507406-18507567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:240-397
               
               
               Cow position:chr27:30444913-30444763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:240-397
               
               
               Cow position:chr27:31157571-31157729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:240-398
               
               
               Cow position:chr27:178624-178781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:240-405
               
               
               Cow position:chr27:20490285-20490456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr27:28476347-28476187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-410
               
               
               Cow position:chr27:26983924-26984092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:240-414
               
               
               Cow position:chr27:22497789-22497956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:240-417
               
               
               Cow position:chr27:1067337-1067505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr27:20325118-20325288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-429
               
               
               Cow position:chr27:2949555-2949377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-434
               
               
               Cow position:chr27:20324900-20325100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-434
               
               
               Cow position:chr27:29249347-29249544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:240-437
               
               
               Cow position:chr27:29308104-29308301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:240-440
               
               
               Cow position:chr27:9956673-9956474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:240-442
               
               
               Cow position:chr27:7343667-7343465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:240-442
               
               
               Cow position:chr27:18558119-18558320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:240-442
               
               
               Cow position:chr27:27055057-27055249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:240-444
               
               
               Cow position:chr27:11480877-11480671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:240-468
               
               
               Cow position:chr27:24331475-24331707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):55, 123

               
               
               Conread position:240-469
               
               
               Cow position:chr27:23994654-23994422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 127

               
               
               Conread position:240-480
               
               
               Cow position:chr27:20045657-20045894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 28

               
               
               Conread position:240-487
               
               
               Cow position:chr27:24240113-24240367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:240-492
               
               
               Cow position:chr27:27632832-27632587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):176, 50

               
               
               Conread position:240-494
               
               
               Cow position:chr27:299613-299358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):176, 54

               
               
               Conread position:240-494
               
               
               Cow position:chr27:1637165-1636914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr27:10307542-10307281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 110

               
               
               Conread position:240-494
               
               
               Cow position:chr27:12596543-12596786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):195, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr27:22386649-22386891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr27:29185084-29184817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr27:29597984-29597728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:240-494
               
               
               Cow position:chr27:30407286-30407016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:240-496
               
               
               Cow position:chr27:12459049-12459308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 121

               
               
               Conread position:241-410
               
               
               Cow position:chr27:20283406-20283566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr27:18791752-18791572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr27:10323606-10323800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:241-442
               
               
               Cow position:chr27:15003217-15003015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:241-489
               
               
               Cow position:chr27:29693229-29693483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:242-399
               
               
               Cow position:chr27:26245783-26245624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:242-399
               
               
               Cow position:chr27:29961813-29961663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr27:23484979-23485172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):177, 28

               
               
               Conread position:242-442
               
               
               Cow position:chr27:30455756-30455957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):115, 119

               
               
               Conread position:242-444
               
               
               Cow position:chr27:27740530-27740326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:242-450
               
               
               Cow position:chr27:20770753-20770557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:242-456
               
               
               Cow position:chr27:24693181-24693391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):173, 66

               
               
               Conread position:242-493
               
               
               Cow position:chr27:31373209-31372958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 133

               
               
               Conread position:242-494
               
               
               Cow position:chr27:20517415-20517679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:242-494
               
               
               Cow position:chr27:20637295-20637045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:242-494
               
               
               Cow position:chr27:21978380-21978118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:242-494
               
               
               Cow position:chr27:23452226-23452480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 73

               
               
               Conread position:243-492
               
               
               Cow position:chr27:26865344-26865099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):176, 65

               
               
               Conread position:244-409
               
               
               Cow position:chr27:29183461-29183287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:244-410
               
               
               Cow position:chr27:9253347-9253183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-436
               
               
               Cow position:chr27:10581299-10581486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):175, 130

               
               
               Conread position:244-494
               
               
               Cow position:chr27:28260769-28260516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:245-406
               
               
               Cow position:chr27:29160218-29160055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:245-410
               
               
               Cow position:chr27:31031233-31031385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:245-417
               
               
               Cow position:chr27:232317-232491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:245-425
               
               
               Cow position:chr27:26909822-26909645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):174, 63

               
               
               Conread position:245-441
               
               
               Cow position:chr27:2644332-2644128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-494
               
               
               Cow position:chr27:30764799-30765057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:246-391
               
               
               Cow position:chr27:16505139-16504999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:246-404
               
               
               Cow position:chr27:26317833-26317989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:246-494
               
               
               Cow position:chr27:24035509-24035268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:247-392
               
               
               Cow position:chr27:29892490-29892637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:247-393
               
               
               Cow position:chr27:11349053-11349193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:247-442
               
               
               Cow position:chr27:21393725-21393544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:247-490
               
               
               Cow position:chr27:6550227-6550474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:247-490
               
               
               Cow position:chr27:7959063-7958824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:247-494
               
               
               Cow position:chr27:31231311-31231066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):173, 70

               
               
               Conread position:248-415
               
               
               Cow position:chr27:23177543-23177376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:248-417
               
               
               Cow position:chr27:22735825-22735654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:248-417
               
               
               Cow position:chr27:30997060-30996891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:248-431
               
               
               Cow position:chr27:15859528-15859345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 154

               
               
               Conread position:248-469
               
               
               Cow position:chr27:435001-435226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:248-493
               
               
               Cow position:chr27:19660697-19660955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:248-493
               
               
               Cow position:chr27:23554560-23554310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 135

               
               
               Conread position:248-494
               
               
               Cow position:chr27:28518062-28518316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-495
               
               
               Cow position:chr27:26490136-26489883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:249-442
               
               
               Cow position:chr27:6319693-6319882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):170, 56

               
               
               Conread position:249-478
               
               
               Cow position:chr27:13318207-13317972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:249-483
               
               
               Cow position:chr27:26188597-26188840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:250-430
               
               
               Cow position:chr27:26504075-26504253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):169, 153

               
               
               Conread position:250-484
               
               
               Cow position:chr27:1190705-1190464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:250-493
               
               
               Cow position:chr27:19685939-19685691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:250-494
               
               
               Cow position:chr27:23108131-23107880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:250-494
               
               
               Cow position:chr27:27695004-27694750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 155

               
               
               Conread position:251-392
               
               
               Cow position:chr27:26624979-26625121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:252-442
               
               
               Cow position:chr27:23890706-23890901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:253-467
               
               
               Cow position:chr27:26238798-26239011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:254-414
               
               
               Cow position:chr27:23060341-23060179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:256-382
               
               
               Cow position:chr27:624439-624316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:259-457
               
               
               Cow position:chr27:24709334-24709539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:259-485
               
               
               Cow position:chr27:28478364-28478594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):160, 51

               
               
               Conread position:259-493
               
               
               Cow position:chr27:20068195-20067956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:261-408
               
               
               Cow position:chr27:23100862-23100720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:261-494
               
               
               Cow position:chr27:15925124-15925362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:266-492
               
               
               Cow position:chr27:12710027-12710261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:266-495
               
               
               Cow position:chr27:28242765-28242996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:268-472
               
               
               Cow position:chr27:1768833-1768630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):182, 49

               
               
               Conread position:270-496
               
               
               Cow position:chr27:20481565-20481353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):149, 50

               
               
               Conread position:273-491
               
               
               Cow position:chr27:22422058-22421831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:274-385
               
               
               Cow position:chr27:7847512-7847623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:281-411
               
               
               Cow position:chr27:27551154-27551024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:281-494
               
               
               Cow position:chr27:22418962-22418746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:281-496
               
               
               Cow position:chr27:26506545-26506752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:284-417
               
               
               Cow position:chr27:27747663-27747528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:289-494
               
               
               Cow position:chr27:7973984-7974195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:289-496
               
               
               Cow position:chr27:26959804-26959595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):82, 24

               
               
               Conread position:295-494
               
               
               Cow position:chr27:22423330-22423531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 166

               
               
               Conread position:296-494
               
               
               Cow position:chr27:22225773-22225574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:300-494
               
               
               Cow position:chr27:17918493-17918294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:302-478
               
               
               Cow position:chr27:30489588-30489414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 119

               
               
               Conread position:302-486
               
               
               Cow position:chr27:22348314-22348500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:302-491
               
               
               Cow position:chr27:24305264-24305456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:302-494
               
               
               Cow position:chr27:16589880-16589692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:302-494
               
               
               Cow position:chr27:20795615-20795814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):117, 98

               
               
               Conread position:303-491
               
               
               Cow position:chr27:20758206-20758025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):117, 54

               
               
               Conread position:303-496
               
               
               Cow position:chr27:23483051-23483250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:305-496
               
               
               Cow position:chr27:18767234-18767039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:308-496
               
               
               Cow position:chr27:22569613-22569799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:310-493
               
               
               Cow position:chr27:20553563-20553746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:311-484
               
               
               Cow position:chr27:20812736-20812917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 161

               
               
               Conread position:311-494
               
               
               Cow position:chr27:4672843-4673040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:323-494
               
               
               Cow position:chr27:20092991-20092808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:326-491
               
               
               Cow position:chr27:26407313-26407147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:329-494
               
               
               Cow position:chr27:1122881-1123052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):90, 79

               
               
               Conread position:195-490
               
               
               Cow position:chr28:27218575-27218269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:208-382
               
               
               Cow position:chr28:17060295-17060125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:213-417
               
               
               Cow position:chr28:14242923-14242717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 88

               
               
               Conread position:214-474
               
               
               Cow position:chr28:13370911-13371182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:215-442
               
               
               Cow position:chr28:6283265-6283490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:215-494
               
               
               Cow position:chr28:1838220-1837935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:216-385
               
               
               Cow position:chr28:3310997-3311168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:217-411
               
               
               Cow position:chr28:34081649-34081834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:217-444
               
               
               Cow position:chr28:8259854-8259624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:218-399
               
               
               Cow position:chr28:26574623-26574452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:220-430
               
               
               Cow position:chr28:7644965-7644752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:220-442
               
               
               Cow position:chr28:19217033-19216820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:221-494
               
               
               Cow position:chr28:4006999-4006736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:222-398
               
               
               Cow position:chr28:4077116-4077303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:222-415
               
               
               Cow position:chr28:30385371-30385179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:222-430
               
               
               Cow position:chr28:12400460-12400246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 130

               
               
               Conread position:222-442
               
               
               Cow position:chr28:777894-777673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 92

               
               
               Conread position:222-442
               
               
               Cow position:chr28:2279387-2279591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr28:17740042-17739823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:222-442
               
               
               Cow position:chr28:32179916-32179695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:222-492
               
               
               Cow position:chr28:6358192-6358469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:222-494
               
               
               Cow position:chr28:4823818-4823547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:222-494
               
               
               Cow position:chr28:4884035-4884323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):105, 92

               
               
               Conread position:223-373
               
               
               Cow position:chr28:5428538-5428686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:223-375
               
               
               Cow position:chr28:5294784-5294936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:223-378
               
               
               Cow position:chr28:22170067-22170217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:223-380
               
               
               Cow position:chr28:22278408-22278571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):88, 144

               
               
               Conread position:223-385
               
               
               Cow position:chr28:24767625-24767460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:223-397
               
               
               Cow position:chr28:2593886-2593726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:223-407
               
               
               Cow position:chr28:17680843-17680656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 103

               
               
               Conread position:223-455
               
               
               Cow position:chr28:26810897-26810664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:223-493
               
               
               Cow position:chr28:4089844-4090106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):163, 24

               
               
               Conread position:223-494
               
               
               Cow position:chr28:5273210-5273498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:223-494
               
               
               Cow position:chr28:10588815-10589083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:224-391
               
               
               Cow position:chr28:10533111-10533270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:224-392
               
               
               Cow position:chr28:5770074-5769916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:225-392
               
               
               Cow position:chr28:11798559-11798730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:225-396
               
               
               Cow position:chr28:18791250-18791083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:225-425
               
               
               Cow position:chr28:5818052-5817860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 5

               
               
               Conread position:225-441
               
               
               Cow position:chr28:662313-662105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:225-441
               
               
               Cow position:chr28:4101727-4101519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):189, 64

               
               
               Conread position:225-441
               
               
               Cow position:chr28:4877217-4877432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:225-442
               
               
               Cow position:chr28:11743614-11743821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-494
               
               
               Cow position:chr28:11828740-11829005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 180

               
               
               Conread position:225-494
               
               
               Cow position:chr28:20409606-20409331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 114

               
               
               Conread position:226-423
               
               
               Cow position:chr28:5609706-5609899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:226-494
               
               
               Cow position:chr28:9100142-9099875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:227-313
               
               
               Cow position:chr28:25676887-25676973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-388
               
               
               Cow position:chr28:8384085-8383914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-393
               
               
               Cow position:chr28:27787776-27787614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:227-399
               
               
               Cow position:chr28:16200527-16200701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr28:8515983-8516146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr28:26960699-26960872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:227-406
               
               
               Cow position:chr28:9677876-9677704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr28:28903346-28903525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-410
               
               
               Cow position:chr28:18761795-18761972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:227-411
               
               
               Cow position:chr28:118827-118639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr28:10480588-10480784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:227-414
               
               
               Cow position:chr28:13133847-13133659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:227-414
               
               
               Cow position:chr28:24651390-24651581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:227-417
               
               
               Cow position:chr28:3678572-3678386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-422
               
               
               Cow position:chr28:10959012-10958821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):134, 81

               
               
               Conread position:227-422
               
               
               Cow position:chr28:19395076-19394890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:227-435
               
               
               Cow position:chr28:117545-117758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:227-440
               
               
               Cow position:chr28:4876655-4876443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:227-441
               
               
               Cow position:chr28:10615734-10615947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:227-442
               
               
               Cow position:chr28:5674086-5673873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:227-442
               
               
               Cow position:chr28:11307305-11307520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:227-469
               
               
               Cow position:chr28:11987376-11987148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):199, 40

               
               
               Conread position:227-469
               
               
               Cow position:chr28:12055614-12055386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):199, 40

               
               
               Conread position:227-492
               
               
               Cow position:chr28:11079513-11079249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:227-492
               
               
               Cow position:chr28:11584998-11585262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr28:4071171-4070910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr28:4643557-4643827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:227-494
               
               
               Cow position:chr28:4809983-4809730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr28:5200040-5199763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:227-494
               
               
               Cow position:chr28:5577746-5577466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:227-494
               
               
               Cow position:chr28:7008770-7009036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr28:8140695-8140423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr28:8347950-8347672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:227-494
               
               
               Cow position:chr28:10978051-10977783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):157, 50

               
               
               Conread position:227-494
               
               
               Cow position:chr28:11422608-11422875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr28:13245777-13245500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr28:14720571-14720837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr28:16918961-16919225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:227-494
               
               
               Cow position:chr28:19564022-19564291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr28:20759481-20759761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr28:21845164-21844896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr28:22813460-22813201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):183, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr28:25727581-25727311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:227-494
               
               
               Cow position:chr28:30302995-30303253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):197, 87

               
               
               Conread position:227-495
               
               
               Cow position:chr28:22332741-22332474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:228-411
               
               
               Cow position:chr28:22847376-22847560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:228-442
               
               
               Cow position:chr28:5805876-5805669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:228-442
               
               
               Cow position:chr28:25700658-25700865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:228-492
               
               
               Cow position:chr28:4182213-4181946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 67

               
               
               Conread position:229-397
               
               
               Cow position:chr28:12951627-12951461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:230-350
               
               
               Cow position:chr28:6124050-6124171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:230-379
               
               
               Cow position:chr28:18740286-18740430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-381
               
               
               Cow position:chr28:16177460-16177314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-382
               
               
               Cow position:chr28:22182922-22183082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:230-383
               
               
               Cow position:chr28:5724930-5725090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:230-385
               
               
               Cow position:chr28:7750811-7750960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr28:16159660-16159819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:230-390
               
               
               Cow position:chr28:21118890-21118728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr28:19015911-19015755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:230-393
               
               
               Cow position:chr28:3494571-3494403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr28:11562033-11562203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr28:6301294-6301123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:230-406
               
               
               Cow position:chr28:8827374-8827195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:230-406
               
               
               Cow position:chr28:10053122-10053290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:230-410
               
               
               Cow position:chr28:3759207-3759021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):71, 135

               
               
               Conread position:230-413
               
               
               Cow position:chr28:9705866-9705681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 175

               
               
               Conread position:230-414
               
               
               Cow position:chr28:3725998-3726182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:230-414
               
               
               Cow position:chr28:21008461-21008638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr28:2077711-2077525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-416
               
               
               Cow position:chr28:5402833-5403018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:230-416
               
               
               Cow position:chr28:8936358-8936175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr28:2892466-2892276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr28:20046752-20046577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:230-417
               
               
               Cow position:chr28:22133118-22132935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 74

               
               
               Conread position:230-417
               
               
               Cow position:chr28:26943942-26944134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-417
               
               
               Cow position:chr28:34464127-34463938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-419
               
               
               Cow position:chr28:17943934-17943753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-423
               
               
               Cow position:chr28:32014995-32014801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):131, 127

               
               
               Conread position:230-425
               
               
               Cow position:chr28:8681227-8681414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-426
               
               
               Cow position:chr28:13269928-13269745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-431
               
               
               Cow position:chr28:9109421-9109225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):189, 77

               
               
               Conread position:230-440
               
               
               Cow position:chr28:21207167-21207368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 85

               
               
               Conread position:230-441
               
               
               Cow position:chr28:12974094-12973880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:230-442
               
               
               Cow position:chr28:3143674-3143877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr28:4307683-4307899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr28:5630309-5630096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:230-442
               
               
               Cow position:chr28:6563684-6563900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr28:13048075-13048285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:230-443
               
               
               Cow position:chr28:4163370-4163582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):82, 181

               
               
               Conread position:230-458
               
               
               Cow position:chr28:15362788-15362560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 93

               
               
               Conread position:230-463
               
               
               Cow position:chr28:7014664-7014432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 115

               
               
               Conread position:230-472
               
               
               Cow position:chr28:11866458-11866696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:230-478
               
               
               Cow position:chr28:33561576-33561330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 103

               
               
               Conread position:230-490
               
               
               Cow position:chr28:7697769-7698035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 229

               
               
               Conread position:230-490
               
               
               Cow position:chr28:10606429-10606683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:230-493
               
               
               Cow position:chr28:3449519-3449243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 84

               
               
               Conread position:230-493
               
               
               Cow position:chr28:11884321-11884578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):190, 36

               
               
               Conread position:230-493
               
               
               Cow position:chr28:28765693-28765963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:230-493
               
               
               Cow position:chr28:34877762-34878028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:230-494
               
               
               Cow position:chr28:3445269-3445542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:230-494
               
               
               Cow position:chr28:4013293-4013027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr28:4881039-4881296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):186, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr28:5144304-5144579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr28:5436876-5437147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 135

               
               
               Conread position:230-494
               
               
               Cow position:chr28:8787749-8787480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr28:10495090-10495348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr28:14151436-14151174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 217

               
               
               Conread position:230-494
               
               
               Cow position:chr28:15272060-15272321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr28:20124991-20124724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):168, 71

               
               
               Conread position:230-494
               
               
               Cow position:chr28:22308854-22308584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr28:24966595-24966325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:230-494
               
               
               Cow position:chr28:25129094-25128824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):189, 73

               
               
               Conread position:230-495
               
               
               Cow position:chr28:30937473-30937727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):213, 33

               
               
               Conread position:230-496
               
               
               Cow position:chr28:16369879-16370141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):189, 56

               
               
               Conread position:231-340
               
               
               Cow position:chr28:19345689-19345578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-389
               
               
               Cow position:chr28:4588523-4588370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:231-390
               
               
               Cow position:chr28:9070094-9069939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):136, 75

               
               
               Conread position:231-397
               
               
               Cow position:chr28:9639862-9639695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 165

               
               
               Conread position:231-399
               
               
               Cow position:chr28:17737941-17738111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:231-417
               
               
               Cow position:chr28:5245566-5245380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:231-417
               
               
               Cow position:chr28:5441688-5441873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:231-431
               
               
               Cow position:chr28:16362332-16362525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-431
               
               
               Cow position:chr28:28501450-28501242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 179

               
               
               Conread position:231-442
               
               
               Cow position:chr28:5193532-5193329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 40

               
               
               Conread position:231-442
               
               
               Cow position:chr28:26826431-26826221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:231-443
               
               
               Cow position:chr28:17727903-17728102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-456
               
               
               Cow position:chr28:7964469-7964693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):219, 102

               
               
               Conread position:231-484
               
               
               Cow position:chr28:6059262-6059520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:231-494
               
               
               Cow position:chr28:3011058-3011332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:231-494
               
               
               Cow position:chr28:3741073-3740821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):188, 16

               
               
               Conread position:231-494
               
               
               Cow position:chr28:4159173-4158895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:231-494
               
               
               Cow position:chr28:5931553-5931293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):169, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr28:10863591-10863846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):208, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr28:19221927-19222210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr28:22500297-22500556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:231-494
               
               
               Cow position:chr28:23410125-23410384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 68

               
               
               Conread position:231-496
               
               
               Cow position:chr28:4834634-4834907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:231-496
               
               
               Cow position:chr28:25057165-25056905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:232-382
               
               
               Cow position:chr28:3257198-3257047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-398
               
               
               Cow position:chr28:24064684-24064855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:232-399
               
               
               Cow position:chr28:29500615-29500442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-410
               
               
               Cow position:chr28:2151232-2151409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:232-424
               
               
               Cow position:chr28:11019599-11019776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):175, 48

               
               
               Conread position:232-434
               
               
               Cow position:chr28:3137761-3137549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:232-438
               
               
               Cow position:chr28:11398586-11398795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-440
               
               
               Cow position:chr28:19038810-19039019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:232-475
               
               
               Cow position:chr28:5255079-5254839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:232-477
               
               
               Cow position:chr28:31841143-31841387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:232-492
               
               
               Cow position:chr28:11426340-11426599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):187, 83

               
               
               Conread position:232-492
               
               
               Cow position:chr28:22346230-22345961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:232-493
               
               
               Cow position:chr28:3492579-3492843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:232-494
               
               
               Cow position:chr28:4016731-4016473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr28:5074313-5074569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):201, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr28:7131883-7132135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 85

               
               
               Conread position:232-494
               
               
               Cow position:chr28:7350858-7350598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 32

               
               
               Conread position:232-494
               
               
               Cow position:chr28:7618952-7619212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:232-494
               
               
               Cow position:chr28:13474507-13474241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 88

               
               
               Conread position:232-494
               
               
               Cow position:chr28:24082478-24082203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr28:27161108-27161387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:232-494
               
               
               Cow position:chr28:29988900-29989174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:232-494
               
               
               Cow position:chr28:32358312-32358060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:232-496
               
               
               Cow position:chr28:29416517-29416780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:233-339
               
               
               Cow position:chr28:21046382-21046491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:233-385
               
               
               Cow position:chr28:13174347-13174500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 129

               
               
               Conread position:233-391
               
               
               Cow position:chr28:24238277-24238427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:233-397
               
               
               Cow position:chr28:8655958-8656122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:233-413
               
               
               Cow position:chr28:8304449-8304276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr28:5552500-5552691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 135

               
               
               Conread position:233-426
               
               
               Cow position:chr28:16252201-16252389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:233-426
               
               
               Cow position:chr28:17948910-17949099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:233-438
               
               
               Cow position:chr28:23793113-23793309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):167, 37

               
               
               Conread position:233-444
               
               
               Cow position:chr28:11346282-11346491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 87

               
               
               Conread position:233-494
               
               
               Cow position:chr28:13527405-13527137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:233-494
               
               
               Cow position:chr28:30746531-30746787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):119, 50

               
               
               Conread position:233-494
               
               
               Cow position:chr28:34134066-34133801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:234-373
               
               
               Cow position:chr28:16964758-16964900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-374
               
               
               Cow position:chr28:23460349-23460209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:234-391
               
               
               Cow position:chr28:26304272-26304113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:234-397
               
               
               Cow position:chr28:11309888-11310056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:234-399
               
               
               Cow position:chr28:4027263-4027421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr28:31223351-31223519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr28:3423983-3423801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr28:4022877-4022697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:234-417
               
               
               Cow position:chr28:5236080-5235905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr28:11814873-11815054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 76

               
               
               Conread position:234-417
               
               
               Cow position:chr28:11827894-11827712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 168

               
               
               Conread position:234-417
               
               
               Cow position:chr28:28602959-28602776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:234-424
               
               
               Cow position:chr28:11411333-11411517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:234-428
               
               
               Cow position:chr28:2777736-2777542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):185, 90

               
               
               Conread position:234-430
               
               
               Cow position:chr28:17620153-17620347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 148

               
               
               Conread position:234-442
               
               
               Cow position:chr28:5232146-5231936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:234-442
               
               
               Cow position:chr28:12991341-12991134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):182, 82

               
               
               Conread position:234-443
               
               
               Cow position:chr28:4364617-4364825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:234-444
               
               
               Cow position:chr28:34230436-34230224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:234-490
               
               
               Cow position:chr28:133874-134126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:234-493
               
               
               Cow position:chr28:30326895-30327149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):166, 72

               
               
               Conread position:234-494
               
               
               Cow position:chr28:3410783-3411051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr28:3484792-3484518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:234-494
               
               
               Cow position:chr28:9426146-9426411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):185, 73

               
               
               Conread position:234-494
               
               
               Cow position:chr28:17012099-17012351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr28:26982530-26982796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:235-373
               
               
               Cow position:chr28:8165008-8165148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):80, 128

               
               
               Conread position:235-388
               
               
               Cow position:chr28:14657921-14657766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-392
               
               
               Cow position:chr28:4937034-4937193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:235-399
               
               
               Cow position:chr28:25518551-25518723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:235-399
               
               
               Cow position:chr28:34830359-34830196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:235-407
               
               
               Cow position:chr28:24698898-24698724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:235-411
               
               
               Cow position:chr28:21744917-21744745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 79

               
               
               Conread position:235-417
               
               
               Cow position:chr28:10196665-10196841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:235-417
               
               
               Cow position:chr28:11239107-11239296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:235-417
               
               
               Cow position:chr28:26820071-26820255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 135

               
               
               Conread position:235-439
               
               
               Cow position:chr28:24996413-24996612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:235-442
               
               
               Cow position:chr28:5236390-5236606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:235-442
               
               
               Cow position:chr28:30902326-30902124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):184, 80

               
               
               Conread position:235-455
               
               
               Cow position:chr28:13356162-13356391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:235-485
               
               
               Cow position:chr28:11059696-11059452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):181, 79

               
               
               Conread position:235-494
               
               
               Cow position:chr28:6091561-6091302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):161, 62

               
               
               Conread position:235-494
               
               
               Cow position:chr28:33884607-33884341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:236-417
               
               
               Cow position:chr28:19127968-19128145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:237-422
               
               
               Cow position:chr28:12933533-12933711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:238-442
               
               
               Cow position:chr28:7267747-7267945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):181, 77

               
               
               Conread position:239-424
               
               
               Cow position:chr28:20968375-20968564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:239-442
               
               
               Cow position:chr28:3200662-3200457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:239-445
               
               
               Cow position:chr28:5188228-5188434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:240-358
               
               
               Cow position:chr28:4375426-4375540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-385
               
               
               Cow position:chr28:7523215-7523360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:240-389
               
               
               Cow position:chr28:21263354-21263209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:240-392
               
               
               Cow position:chr28:19994746-19994901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:240-404
               
               
               Cow position:chr28:10763088-10762931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr28:4227676-4227510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:240-410
               
               
               Cow position:chr28:26867954-26868120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr28:4379500-4379662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr28:20281948-20281785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:240-417
               
               
               Cow position:chr28:4186103-4185930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:240-417
               
               
               Cow position:chr28:8716180-8716364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr28:10890542-10890711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr28:24646783-24646607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-430
               
               
               Cow position:chr28:7413863-7413672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):67, 124

               
               
               Conread position:240-430
               
               
               Cow position:chr28:16856906-16857097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 121

               
               
               Conread position:240-442
               
               
               Cow position:chr28:6975434-6975239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:240-442
               
               
               Cow position:chr28:8396525-8396333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):179, 19

               
               
               Conread position:240-442
               
               
               Cow position:chr28:11816484-11816668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):176, 29

               
               
               Conread position:240-442
               
               
               Cow position:chr28:19262384-19262589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:240-442
               
               
               Cow position:chr28:29850622-29850817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:240-469
               
               
               Cow position:chr28:20174038-20173804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:240-485
               
               
               Cow position:chr28:11348626-11348375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:240-487
               
               
               Cow position:chr28:3746397-3746151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):176, 76

               
               
               Conread position:240-490
               
               
               Cow position:chr28:30293386-30293641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:240-492
               
               
               Cow position:chr28:24672468-24672207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-493
               
               
               Cow position:chr28:21868657-21868397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr28:751428-751171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:240-494
               
               
               Cow position:chr28:2960616-2960893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr28:3023716-3023975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:240-494
               
               
               Cow position:chr28:9285177-9285433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:240-494
               
               
               Cow position:chr28:16204130-16204388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:240-494
               
               
               Cow position:chr28:23616605-23616349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:240-495
               
               
               Cow position:chr28:9636257-9636513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:240-495
               
               
               Cow position:chr28:11197472-11197730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:241-370
               
               
               Cow position:chr28:4878665-4878794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:241-389
               
               
               Cow position:chr28:15295437-15295288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:241-397
               
               
               Cow position:chr28:659088-659251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:241-399
               
               
               Cow position:chr28:2435839-2435990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:241-411
               
               
               Cow position:chr28:4866379-4866544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):156, 66

               
               
               Conread position:241-424
               
               
               Cow position:chr28:10252716-10252901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:241-430
               
               
               Cow position:chr28:4074176-4073979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:241-434
               
               
               Cow position:chr28:2821460-2821259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:241-440
               
               
               Cow position:chr28:9740657-9740466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:241-442
               
               
               Cow position:chr28:10203311-10203119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-443
               
               
               Cow position:chr28:18797509-18797317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):178, 60

               
               
               Conread position:241-489
               
               
               Cow position:chr28:7557528-7557777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 206

               
               
               Conread position:241-494
               
               
               Cow position:chr28:1099478-1099720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):200, 67

               
               
               Conread position:241-494
               
               
               Cow position:chr28:4282290-4282549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:241-494
               
               
               Cow position:chr28:11016603-11016364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:241-494
               
               
               Cow position:chr28:12430805-12430548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:242-404
               
               
               Cow position:chr28:16570002-16569842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr28:11305437-11305598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr28:4870598-4870781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-417
               
               
               Cow position:chr28:22085347-22085518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr28:6322017-6321815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:242-446
               
               
               Cow position:chr28:27721894-27721696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:242-487
               
               
               Cow position:chr28:5684898-5684653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):177, 66

               
               
               Conread position:242-492
               
               
               Cow position:chr28:5204383-5204135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):177, 26

               
               
               Conread position:242-494
               
               
               Cow position:chr28:5138801-5139056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):177, 64

               
               
               Conread position:242-494
               
               
               Cow position:chr28:11527061-11527320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:242-494
               
               
               Cow position:chr28:12672263-12672522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:242-494
               
               
               Cow position:chr28:34430225-34430481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:244-427
               
               
               Cow position:chr28:26530671-26530853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 80

               
               
               Conread position:245-424
               
               
               Cow position:chr28:2825616-2825435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:246-494
               
               
               Cow position:chr28:14998258-14998005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 53

               
               
               Conread position:247-440
               
               
               Cow position:chr28:4046037-4045848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-489
               
               
               Cow position:chr28:9684144-9684387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 57

               
               
               Conread position:248-411
               
               
               Cow position:chr28:26269591-26269416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr28:13160351-13160519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:248-417
               
               
               Cow position:chr28:18608173-18608344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:248-442
               
               
               Cow position:chr28:5711819-5712004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:248-442
               
               
               Cow position:chr28:16879760-16879571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):168, 68

               
               
               Conread position:248-442
               
               
               Cow position:chr28:17071532-17071335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:248-490
               
               
               Cow position:chr28:21363932-21363690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:248-492
               
               
               Cow position:chr28:16346346-16346590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:248-492
               
               
               Cow position:chr28:26531089-26531339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:248-494
               
               
               Cow position:chr28:3914897-3914652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):171, 57

               
               
               Conread position:249-407
               
               
               Cow position:chr28:3729829-3729985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:249-493
               
               
               Cow position:chr28:26743822-26743566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:250-390
               
               
               Cow position:chr28:4100574-4100708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-399
               
               
               Cow position:chr28:4166765-4166616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:250-442
               
               
               Cow position:chr28:27429218-27429029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:250-496
               
               
               Cow position:chr28:20397176-20397434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:251-490
               
               
               Cow position:chr28:18369824-18370063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:252-410
               
               
               Cow position:chr28:19118160-19118000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:254-494
               
               
               Cow position:chr28:657279-657512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):58, 165

               
               
               Conread position:255-494
               
               
               Cow position:chr28:16210916-16211163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):164, 81

               
               
               Conread position:256-424
               
               
               Cow position:chr28:1632461-1632640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:258-494
               
               
               Cow position:chr28:4138485-4138726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:259-443
               
               
               Cow position:chr28:9384110-9384290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):160, 60

               
               
               Conread position:264-492
               
               
               Cow position:chr28:4938972-4938766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:265-494
               
               
               Cow position:chr28:2899173-2898939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 188

               
               
               Conread position:266-493
               
               
               Cow position:chr28:11559459-11559694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:269-496
               
               
               Cow position:chr28:2131753-2131988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:270-494
               
               
               Cow position:chr28:7927339-7927115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):175, 48

               
               
               Conread position:271-442
               
               
               Cow position:chr28:3408053-3408220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):148, 37

               
               
               Conread position:273-494
               
               
               Cow position:chr28:11686851-11687088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:275-490
               
               
               Cow position:chr28:25400042-25399817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:280-414
               
               
               Cow position:chr28:8258981-8258851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:281-407
               
               
               Cow position:chr28:8167194-8167320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:282-433
               
               
               Cow position:chr28:10212270-10212420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 35

               
               
               Conread position:283-399
               
               
               Cow position:chr28:24726283-24726395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:285-494
               
               
               Cow position:chr28:25596778-25596567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:295-490
               
               
               Cow position:chr28:8149484-8149681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:302-441
               
               
               Cow position:chr28:7498008-7498148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr28:2752357-2752554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr28:6971209-6971410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr28:8021963-8022169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:303-493
               
               
               Cow position:chr28:10172280-10172472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:304-490
               
               
               Cow position:chr28:32174764-32174574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:304-494
               
               
               Cow position:chr28:26220393-26220196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:305-467
               
               
               Cow position:chr28:4355682-4355519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):145, 49

               
               
               Conread position:308-493
               
               
               Cow position:chr28:25249487-25249295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:318-494
               
               
               Cow position:chr28:16245942-16246128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):101, 81

               
               
               Conread position:319-493
               
               
               Cow position:chr28:12070354-12070176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:322-494
               
               
               Cow position:chr28:26614992-26614825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:324-441
               
               
               Cow position:chr28:3147595-3147481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):95, 6

               
               
               Conread position:324-489
               
               
               Cow position:chr28:4438829-4438655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:324-492
               
               
               Cow position:chr28:7865446-7865267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:329-486
               
               
               Cow position:chr28:2762307-2762142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:212-431
               
               
               Cow position:chr29:27683744-27683950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:214-481
               
               
               Cow position:chr29:23155455-23155174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:216-472
               
               
               Cow position:chr29:3826184-3825934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):199, 52

               
               
               Conread position:217-440
               
               
               Cow position:chr29:17236640-17236433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:220-426
               
               
               Cow position:chr29:32215918-32215714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):199, 70

               
               
               Conread position:220-442
               
               
               Cow position:chr29:29973793-29974023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:221-385
               
               
               Cow position:chr29:4023209-4023047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:221-419
               
               
               Cow position:chr29:44901449-44901648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:221-431
               
               
               Cow position:chr29:17804745-17804537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:221-494
               
               
               Cow position:chr29:3583903-3584177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):98, 125

               
               
               Conread position:222-407
               
               
               Cow position:chr29:10203981-10203799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:222-414
               
               
               Cow position:chr29:20781233-20781038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:222-425
               
               
               Cow position:chr29:6774697-6774892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:222-441
               
               
               Cow position:chr29:28420971-28420748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):13, 182

               
               
               Conread position:222-460
               
               
               Cow position:chr29:40791509-40791275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):196, 93

               
               
               Conread position:222-492
               
               
               Cow position:chr29:1615137-1614861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):197, 18

               
               
               Conread position:223-441
               
               
               Cow position:chr29:29308370-29308579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:223-490
               
               
               Cow position:chr29:23825873-23825606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:223-494
               
               
               Cow position:chr29:22518909-22519196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 141

               
               
               Conread position:224-442
               
               
               Cow position:chr29:32733510-32733290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:224-494
               
               
               Cow position:chr29:38396575-38396297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:225-397
               
               
               Cow position:chr29:29645115-29645284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:225-398
               
               
               Cow position:chr29:23678910-23678745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:225-399
               
               
               Cow position:chr29:37990778-37990964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:225-410
               
               
               Cow position:chr29:4121065-4120878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:225-431
               
               
               Cow position:chr29:12890885-12890687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):194, 38

               
               
               Conread position:225-451
               
               
               Cow position:chr29:501408-501183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:225-493
               
               
               Cow position:chr29:12680366-12680093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:226-394
               
               
               Cow position:chr29:659489-659319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 88

               
               
               Conread position:226-440
               
               
               Cow position:chr29:4423245-4423446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):193, 19

               
               
               Conread position:226-494
               
               
               Cow position:chr29:2056268-2055992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:227-354
               
               
               Cow position:chr29:31835475-31835352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-368
               
               
               Cow position:chr29:6337857-6337717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:227-377
               
               
               Cow position:chr29:4741182-4741334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:227-390
               
               
               Cow position:chr29:42849654-42849482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr29:11685376-11685209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-396
               
               
               Cow position:chr29:24660884-24660723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr29:2414542-2414717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:227-399
               
               
               Cow position:chr29:7414701-7414536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:227-399
               
               
               Cow position:chr29:27487403-27487221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr29:37293235-37293071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:227-404
               
               
               Cow position:chr29:2219594-2219417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-408
               
               
               Cow position:chr29:42646256-42646076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:227-408
               
               
               Cow position:chr29:42798162-42797982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:227-412
               
               
               Cow position:chr29:31080370-31080183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:227-414
               
               
               Cow position:chr29:936412-936227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:227-417
               
               
               Cow position:chr29:3549812-3549620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr29:16290930-16290743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:227-417
               
               
               Cow position:chr29:33511519-33511712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:227-430
               
               
               Cow position:chr29:9078323-9078526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 54

               
               
               Conread position:227-442
               
               
               Cow position:chr29:8163619-8163836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 121

               
               
               Conread position:227-442
               
               
               Cow position:chr29:31651609-31651402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):164, 79

               
               
               Conread position:227-442
               
               
               Cow position:chr29:31982027-31981822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):192, 16

               
               
               Conread position:227-442
               
               
               Cow position:chr29:38754731-38754948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:227-443
               
               
               Cow position:chr29:1933363-1933581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:227-444
               
               
               Cow position:chr29:34832186-34832396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:227-484
               
               
               Cow position:chr29:22166881-22167138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr29:109877-109631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):216, 28

               
               
               Conread position:227-494
               
               
               Cow position:chr29:1008027-1007750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:227-494
               
               
               Cow position:chr29:13028657-13028371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):90, 218

               
               
               Conread position:227-494
               
               
               Cow position:chr29:21666293-21666021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):192, 97

               
               
               Conread position:227-494
               
               
               Cow position:chr29:22175897-22175621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 246

               
               
               Conread position:227-494
               
               
               Cow position:chr29:27858994-27858726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr29:34773542-34773800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):139, 66

               
               
               Conread position:228-342
               
               
               Cow position:chr29:28727029-28726919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-361
               
               
               Cow position:chr29:570634-570766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:228-370
               
               
               Cow position:chr29:38010648-38010509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:228-389
               
               
               Cow position:chr29:41094324-41094162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:228-414
               
               
               Cow position:chr29:26631254-26631061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:228-450
               
               
               Cow position:chr29:34359617-34359838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:228-483
               
               
               Cow position:chr29:27911798-27911537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:228-494
               
               
               Cow position:chr29:29923371-29923642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:228-496
               
               
               Cow position:chr29:7310869-7310616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):183, 79

               
               
               Conread position:229-340
               
               
               Cow position:chr29:7452446-7452335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-483
               
               
               Cow position:chr29:31092654-31092395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 132

               
               
               Conread position:229-492
               
               
               Cow position:chr29:26779081-26778814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):174, 74

               
               
               Conread position:230-313
               
               
               Cow position:chr29:19339460-19339377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr29:34483421-34483567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-379
               
               
               Cow position:chr29:44985465-44985327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-380
               
               
               Cow position:chr29:27882046-27881896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:230-385
               
               
               Cow position:chr29:24119294-24119451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-386
               
               
               Cow position:chr29:42887175-42887017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:230-391
               
               
               Cow position:chr29:36546578-36546739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr29:30294667-30294831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr29:7040664-7040835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr29:14828025-14828193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:230-407
               
               
               Cow position:chr29:684973-685146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-411
               
               
               Cow position:chr29:35189813-35189630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-415
               
               
               Cow position:chr29:5830813-5831001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr29:13558541-13558350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr29:14375675-14375864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr29:14746982-14746797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr29:16200272-16200461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr29:21018540-21018729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr29:26017296-26017485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr29:30827612-30827423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-421
               
               
               Cow position:chr29:25432658-25432467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:230-424
               
               
               Cow position:chr29:28087878-28087679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 74

               
               
               Conread position:230-426
               
               
               Cow position:chr29:26211257-26211059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:230-429
               
               
               Cow position:chr29:25288715-25288919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 151

               
               
               Conread position:230-430
               
               
               Cow position:chr29:22576974-22577175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 83

               
               
               Conread position:230-438
               
               
               Cow position:chr29:3711580-3711374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:230-440
               
               
               Cow position:chr29:44991221-44991430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:230-442
               
               
               Cow position:chr29:4070824-4070619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr29:7624369-7624170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr29:16279181-16278979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr29:42630321-42630112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:230-467
               
               
               Cow position:chr29:5568696-5568458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:230-481
               
               
               Cow position:chr29:16609954-16609701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 217

               
               
               Conread position:230-490
               
               
               Cow position:chr29:5994885-5995163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:230-491
               
               
               Cow position:chr29:25475135-25474857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:230-492
               
               
               Cow position:chr29:4492636-4492376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-492
               
               
               Cow position:chr29:36531070-36530801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:230-493
               
               
               Cow position:chr29:4520535-4520270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):213, 19

               
               
               Conread position:230-493
               
               
               Cow position:chr29:35292290-35292023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):127, 88

               
               
               Conread position:230-494
               
               
               Cow position:chr29:11434316-11434056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):189, 47

               
               
               Conread position:230-494
               
               
               Cow position:chr29:20243597-20243875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:230-494
               
               
               Cow position:chr29:23845044-23844769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr29:25737216-25737484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):189, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr29:26259681-26259411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:230-494
               
               
               Cow position:chr29:28196816-28197073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):212, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr29:32656640-32656365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):78, 246

               
               
               Conread position:230-494
               
               
               Cow position:chr29:32799499-32799774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 180

               
               
               Conread position:230-494
               
               
               Cow position:chr29:32894462-32894202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:230-494
               
               
               Cow position:chr29:35458565-35458839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:230-494
               
               
               Cow position:chr29:36220747-36220460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr29:36249242-36248968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:230-495
               
               
               Cow position:chr29:2744065-2744339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:231-361
               
               
               Cow position:chr29:22991495-22991368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:231-390
               
               
               Cow position:chr29:29296591-29296438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:231-394
               
               
               Cow position:chr29:18605465-18605620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:231-397
               
               
               Cow position:chr29:10191842-10192002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):155, 68

               
               
               Conread position:231-406
               
               
               Cow position:chr29:27042473-27042300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:231-410
               
               
               Cow position:chr29:26602403-26602223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:231-424
               
               
               Cow position:chr29:19420417-19420604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:231-431
               
               
               Cow position:chr29:43088509-43088313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):188, 92

               
               
               Conread position:231-435
               
               
               Cow position:chr29:14577060-14576857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:231-438
               
               
               Cow position:chr29:9310806-9310595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):51, 170

               
               
               Conread position:231-440
               
               
               Cow position:chr29:24952890-24952681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 141

               
               
               Conread position:231-442
               
               
               Cow position:chr29:5789218-5789020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):188, 65

               
               
               Conread position:231-469
               
               
               Cow position:chr29:42363816-42364054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):157, 85

               
               
               Conread position:231-490
               
               
               Cow position:chr29:23698173-23697917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:231-492
               
               
               Cow position:chr29:23220287-23220566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:231-493
               
               
               Cow position:chr29:23874665-23874392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-494
               
               
               Cow position:chr29:2623277-2623548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):150, 113

               
               
               Conread position:231-494
               
               
               Cow position:chr29:8926247-8926531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr29:10058340-10058606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):184, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr29:12025276-12025536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):170, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr29:19762466-19762204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr29:22028758-22029024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr29:25092308-25092046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:231-494
               
               
               Cow position:chr29:28840376-28840087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr29:30366852-30367124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:231-494
               
               
               Cow position:chr29:38581195-38580911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 174

               
               
               Conread position:231-494
               
               
               Cow position:chr29:41531054-41530781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:231-496
               
               
               Cow position:chr29:22613624-22613358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:231-496
               
               
               Cow position:chr29:38979877-38980139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):188, 68

               
               
               Conread position:232-351
               
               
               Cow position:chr29:34919260-34919376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr29:33143155-33143319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr29:16657892-16657719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:232-416
               
               
               Cow position:chr29:7443865-7444043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr29:28949187-28948991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):113, 177

               
               
               Conread position:232-421
               
               
               Cow position:chr29:22705245-22705049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 176

               
               
               Conread position:232-442
               
               
               Cow position:chr29:9378837-9378628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 82

               
               
               Conread position:232-442
               
               
               Cow position:chr29:22729767-22729559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-443
               
               
               Cow position:chr29:31934578-31934369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):184, 71

               
               
               Conread position:232-469
               
               
               Cow position:chr29:43099547-43099776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 67

               
               
               Conread position:232-479
               
               
               Cow position:chr29:36210352-36210102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:232-480
               
               
               Cow position:chr29:732812-732566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):184, 51

               
               
               Conread position:232-493
               
               
               Cow position:chr29:5063345-5063082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-493
               
               
               Cow position:chr29:41112688-41112940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):213, 51

               
               
               Conread position:232-494
               
               
               Cow position:chr29:2644119-2644369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):219, 65

               
               
               Conread position:232-494
               
               
               Cow position:chr29:4085498-4085253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:232-494
               
               
               Cow position:chr29:9709895-9709629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:232-494
               
               
               Cow position:chr29:10818258-10818501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr29:12783758-12784022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:232-494
               
               
               Cow position:chr29:17297340-17297068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:232-494
               
               
               Cow position:chr29:19949507-19949235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr29:20770546-20770277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:232-494
               
               
               Cow position:chr29:22162062-22162319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr29:29057381-29057113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:232-494
               
               
               Cow position:chr29:29188896-29189159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:232-494
               
               
               Cow position:chr29:29769152-29769417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):152, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr29:35501463-35501718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):181, 59

               
               
               Conread position:233-378
               
               
               Cow position:chr29:2070995-2071148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:233-390
               
               
               Cow position:chr29:11050871-11050709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:233-399
               
               
               Cow position:chr29:13064051-13063894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr29:38732356-38732188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr29:18748186-18748362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 58

               
               
               Conread position:233-407
               
               
               Cow position:chr29:11081193-11081369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr29:18878281-18878458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:233-413
               
               
               Cow position:chr29:17282262-17282089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr29:17436948-17436768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:233-426
               
               
               Cow position:chr29:22652520-22652331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-438
               
               
               Cow position:chr29:15796685-15796481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:233-442
               
               
               Cow position:chr29:19363909-19363702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):186, 81

               
               
               Conread position:233-442
               
               
               Cow position:chr29:39038068-39038278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:233-444
               
               
               Cow position:chr29:20167624-20167413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:233-455
               
               
               Cow position:chr29:19125531-19125303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):73, 219

               
               
               Conread position:233-488
               
               
               Cow position:chr29:4479966-4480232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):63, 231

               
               
               Conread position:233-494
               
               
               Cow position:chr29:10653523-10653275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):182, 77

               
               
               Conread position:233-494
               
               
               Cow position:chr29:18449937-18450201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 92

               
               
               Conread position:233-494
               
               
               Cow position:chr29:24624442-24624180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:233-494
               
               
               Cow position:chr29:43183116-43183376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:233-496
               
               
               Cow position:chr29:40583986-40583725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:234-391
               
               
               Cow position:chr29:40112579-40112425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):119, 72

               
               
               Conread position:234-399
               
               
               Cow position:chr29:6517428-6517264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:234-417
               
               
               Cow position:chr29:30021321-30021136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr29:35677341-35677526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:234-421
               
               
               Cow position:chr29:11894900-11894711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:234-442
               
               
               Cow position:chr29:19176715-19176922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:234-442
               
               
               Cow position:chr29:36781110-36781313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-445
               
               
               Cow position:chr29:35259181-35258973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):185, 34

               
               
               Conread position:234-467
               
               
               Cow position:chr29:26540340-26540572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:234-467
               
               
               Cow position:chr29:31200474-31200226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:234-469
               
               
               Cow position:chr29:22734906-22735141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:234-490
               
               
               Cow position:chr29:37618508-37618239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:234-493
               
               
               Cow position:chr29:17462579-17462851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:234-493
               
               
               Cow position:chr29:27668454-27668728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 164

               
               
               Conread position:234-494
               
               
               Cow position:chr29:1022494-1022229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 50

               
               
               Conread position:234-494
               
               
               Cow position:chr29:14501795-14501525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr29:34297371-34297637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:234-494
               
               
               Cow position:chr29:36952112-36952366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):185, 84

               
               
               Conread position:234-494
               
               
               Cow position:chr29:43080403-43080689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:235-380
               
               
               Cow position:chr29:25669282-25669148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:235-392
               
               
               Cow position:chr29:17301970-17301803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr29:4648013-4648172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:235-397
               
               
               Cow position:chr29:22018987-22019150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:235-397
               
               
               Cow position:chr29:24605095-24604933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):126, 122

               
               
               Conread position:235-399
               
               
               Cow position:chr29:2730082-2730256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr29:16735425-16735247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-416
               
               
               Cow position:chr29:25793340-25793164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:235-417
               
               
               Cow position:chr29:35084024-35084205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:235-418
               
               
               Cow position:chr29:34274175-34274360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 170

               
               
               Conread position:235-431
               
               
               Cow position:chr29:24026901-24026696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:235-431
               
               
               Cow position:chr29:27812161-27811969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:235-440
               
               
               Cow position:chr29:28979317-28979505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr29:21196453-21196660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):184, 59

               
               
               Conread position:235-442
               
               
               Cow position:chr29:31929185-31928980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):184, 62

               
               
               Conread position:235-442
               
               
               Cow position:chr29:32655895-32656101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:235-467
               
               
               Cow position:chr29:1325645-1325406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:235-480
               
               
               Cow position:chr29:22735249-22735489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 110

               
               
               Conread position:235-487
               
               
               Cow position:chr29:26275800-26275548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):180, 72

               
               
               Conread position:235-490
               
               
               Cow position:chr29:44378208-44378477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 166

               
               
               Conread position:235-492
               
               
               Cow position:chr29:29183922-29183658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr29:4874691-4874954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:235-494
               
               
               Cow position:chr29:21645516-21645258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 143

               
               
               Conread position:235-494
               
               
               Cow position:chr29:22068542-22068812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr29:24293069-24292804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 50

               
               
               Conread position:235-494
               
               
               Cow position:chr29:28813773-28814045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:235-494
               
               
               Cow position:chr29:30548973-30548707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:235-494
               
               
               Cow position:chr29:31786873-31786604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:235-494
               
               
               Cow position:chr29:44139046-44139312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 82

               
               
               Conread position:236-407
               
               
               Cow position:chr29:27997050-27997223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:236-412
               
               
               Cow position:chr29:27929963-27929791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:236-412
               
               
               Cow position:chr29:31107660-31107489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:236-423
               
               
               Cow position:chr29:40350883-40351065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):183, 87

               
               
               Conread position:236-431
               
               
               Cow position:chr29:36697955-36697759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:236-471
               
               
               Cow position:chr29:5893044-5892809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:236-485
               
               
               Cow position:chr29:15947367-15947110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:236-494
               
               
               Cow position:chr29:7125020-7124749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:238-406
               
               
               Cow position:chr29:17663562-17663733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:238-417
               
               
               Cow position:chr29:8634848-8634671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:238-426
               
               
               Cow position:chr29:22335029-22335221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:239-399
               
               
               Cow position:chr29:41422714-41422876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:239-437
               
               
               Cow position:chr29:5064959-5064778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:239-494
               
               
               Cow position:chr29:29324226-29324480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:240-382
               
               
               Cow position:chr29:10994705-10994564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr29:22720453-22720598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr29:16438578-16438742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:240-397
               
               
               Cow position:chr29:42405143-42404984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr29:19187220-19187061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr29:43311348-43311513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-405
               
               
               Cow position:chr29:30743516-30743687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 134

               
               
               Conread position:240-406
               
               
               Cow position:chr29:11887455-11887293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):136, 72

               
               
               Conread position:240-406
               
               
               Cow position:chr29:16561580-16561742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:240-406
               
               
               Cow position:chr29:27961770-27961939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:240-411
               
               
               Cow position:chr29:8798818-8798992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:240-411
               
               
               Cow position:chr29:26539425-26539258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:240-413
               
               
               Cow position:chr29:39639034-39638865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-416
               
               
               Cow position:chr29:23819190-23819372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr29:9622514-9622675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-424
               
               
               Cow position:chr29:4441011-4441193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:240-428
               
               
               Cow position:chr29:23142138-23142330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr29:7290964-7290778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:240-438
               
               
               Cow position:chr29:15798145-15797947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:240-440
               
               
               Cow position:chr29:5953662-5953866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:240-441
               
               
               Cow position:chr29:5408948-5409149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):117, 104

               
               
               Conread position:240-442
               
               
               Cow position:chr29:3293137-3292939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):182, 72

               
               
               Conread position:240-442
               
               
               Cow position:chr29:5520290-5520494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr29:33321543-33321342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 171

               
               
               Conread position:240-443
               
               
               Cow position:chr29:28066674-28066481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-444
               
               
               Cow position:chr29:24187869-24188076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:240-445
               
               
               Cow position:chr29:7954770-7954979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 166

               
               
               Conread position:240-446
               
               
               Cow position:chr29:6636272-6636070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:240-454
               
               
               Cow position:chr29:34760207-34760435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):66, 184

               
               
               Conread position:240-458
               
               
               Cow position:chr29:396596-396379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):160, 80

               
               
               Conread position:240-473
               
               
               Cow position:chr29:25944100-25944343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 214

               
               
               Conread position:240-490
               
               
               Cow position:chr29:23812854-23813100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:240-492
               
               
               Cow position:chr29:20626764-20626512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:240-493
               
               
               Cow position:chr29:28195339-28195578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):203, 63

               
               
               Conread position:240-494
               
               
               Cow position:chr29:5046847-5046586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr29:10839133-10838884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):212, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr29:17110147-17109902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 25

               
               
               Conread position:240-494
               
               
               Cow position:chr29:17222610-17222347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:240-494
               
               
               Cow position:chr29:31674825-31674562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr29:40763502-40763747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:241-394
               
               
               Cow position:chr29:36357321-36357166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:241-399
               
               
               Cow position:chr29:21592892-21592740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:241-400
               
               
               Cow position:chr29:22776269-22776112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):151, 67

               
               
               Conread position:241-410
               
               
               Cow position:chr29:30441132-30440961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:241-414
               
               
               Cow position:chr29:22534156-22533981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:241-414
               
               
               Cow position:chr29:24065878-24065706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr29:629730-629555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:241-417
               
               
               Cow position:chr29:27524641-27524818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:241-435
               
               
               Cow position:chr29:8190008-8190202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:241-440
               
               
               Cow position:chr29:22032453-22032649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:241-444
               
               
               Cow position:chr29:7955795-7956001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:241-444
               
               
               Cow position:chr29:38858019-38858224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:241-485
               
               
               Cow position:chr29:30681510-30681769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 173

               
               
               Conread position:241-494
               
               
               Cow position:chr29:11916014-11915754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:241-494
               
               
               Cow position:chr29:31489517-31489255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:241-494
               
               
               Cow position:chr29:40117758-40117504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:242-490
               
               
               Cow position:chr29:1011401-1011636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:243-398
               
               
               Cow position:chr29:935117-934957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:243-406
               
               
               Cow position:chr29:1946724-1946880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:244-395
               
               
               Cow position:chr29:30920210-30920364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:244-417
               
               
               Cow position:chr29:21443151-21443321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:245-417
               
               
               Cow position:chr29:11227192-11227366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:245-494
               
               
               Cow position:chr29:30227091-30227339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-417
               
               
               Cow position:chr29:4053156-4053323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:246-494
               
               
               Cow position:chr29:28734859-28735111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:247-404
               
               
               Cow position:chr29:30206692-30206839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:247-411
               
               
               Cow position:chr29:23913210-23913370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 67

               
               
               Conread position:247-467
               
               
               Cow position:chr29:39111137-39111343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):169, 67

               
               
               Conread position:247-494
               
               
               Cow position:chr29:34358792-34359047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:248-380
               
               
               Cow position:chr29:42875540-42875667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:248-387
               
               
               Cow position:chr29:7143485-7143342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr29:23114814-23114984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 77

               
               
               Conread position:248-494
               
               
               Cow position:chr29:32197880-32197644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:249-414
               
               
               Cow position:chr29:44981449-44981603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:249-492
               
               
               Cow position:chr29:31944053-31943800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:249-494
               
               
               Cow position:chr29:13639184-13639436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:250-417
               
               
               Cow position:chr29:23991645-23991813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:250-417
               
               
               Cow position:chr29:24365713-24365879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:250-485
               
               
               Cow position:chr29:43544421-43544659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):169, 73

               
               
               Conread position:250-494
               
               
               Cow position:chr29:36632676-36632928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 80

               
               
               Conread position:251-434
               
               
               Cow position:chr29:33393871-33393680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):67, 178

               
               
               Conread position:252-399
               
               
               Cow position:chr29:5769973-5769833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:252-411
               
               
               Cow position:chr29:44684279-44684122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:253-442
               
               
               Cow position:chr29:22723777-22723592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):166, 14

               
               
               Conread position:253-442
               
               
               Cow position:chr29:23825031-23825219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:254-461
               
               
               Cow position:chr29:41223344-41223145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:254-494
               
               
               Cow position:chr29:38582150-38581910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:256-407
               
               
               Cow position:chr29:28257320-28257168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:258-399
               
               
               Cow position:chr29:25846378-25846524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:259-424
               
               
               Cow position:chr29:11116488-11116652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):160, 70

               
               
               Conread position:259-496
               
               
               Cow position:chr29:40633828-40633578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:261-399
               
               
               Cow position:chr29:14227728-14227593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:262-494
               
               
               Cow position:chr29:38347855-38348097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:265-406
               
               
               Cow position:chr29:34688741-34688878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:265-494
               
               
               Cow position:chr29:86835-87082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:265-494
               
               
               Cow position:chr29:28166057-28166281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):154, 14

               
               
               Conread position:266-417
               
               
               Cow position:chr29:24051210-24051364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:267-494
               
               
               Cow position:chr29:45005458-45005697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:269-494
               
               
               Cow position:chr29:32176833-32176613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):150, 49

               
               
               Conread position:274-397
               
               
               Cow position:chr29:10846905-10847027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:274-430
               
               
               Cow position:chr29:40889519-40889671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:281-406
               
               
               Cow position:chr29:28775310-28775435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:281-423
               
               
               Cow position:chr29:5653095-5652950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:286-399
               
               
               Cow position:chr29:45584344-45584231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:286-442
               
               
               Cow position:chr29:7966393-7966237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:290-494
               
               
               Cow position:chr29:1557073-1556865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:292-494
               
               
               Cow position:chr29:38978671-38978463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:295-442
               
               
               Cow position:chr29:847503-847651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 123

               
               
               Conread position:301-494
               
               
               Cow position:chr29:26653914-26654106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:302-417
               
               
               Cow position:chr29:17022282-17022167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr29:32210939-32211124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:302-494
               
               
               Cow position:chr29:40298888-40299080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 144

               
               
               Conread position:303-494
               
               
               Cow position:chr29:23243747-23243946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:304-494
               
               
               Cow position:chr29:29314518-29314721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:305-467
               
               
               Cow position:chr29:34687962-34687803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:305-494
               
               
               Cow position:chr29:10156177-10156371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):135, 68

               
               
               Conread position:307-483
               
               
               Cow position:chr29:6844505-6844684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 126

               
               
               Conread position:312-487
               
               
               Cow position:chr29:742530-742700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:319-494
               
               
               Cow position:chr29:29176502-29176681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):116, 82

               
               
               Conread position:324-493
               
               
               Cow position:chr29:5186383-5186562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr29:20903180-20903353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:332-494
               
               
               Cow position:chr29:18012660-18012488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:332-496
               
               
               Cow position:chr29:24578965-24578792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 167

               
               
               Conread position:358-494
               
               
               Cow position:chr29:44682028-44682165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:180-390
               
               
               Cow position:chr3:16868054-16867845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:204-494
               
               
               Cow position:chr3:68880923-68881200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:210-494
               
               
               Cow position:chr3:26982262-26981978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:212-309
               
               
               Cow position:chr3:10347905-10347810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:214-414
               
               
               Cow position:chr3:23037309-23037511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:214-414
               
               
               Cow position:chr3:35802740-35802943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:214-442
               
               
               Cow position:chr3:15973767-15973535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):105, 134

               
               
               Conread position:214-442
               
               
               Cow position:chr3:76713116-76713351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:215-397
               
               
               Cow position:chr3:3011343-3011161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:216-369
               
               
               Cow position:chr3:70632344-70632188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 154

               
               
               Conread position:216-417
               
               
               Cow position:chr3:78071597-78071796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):120, 102

               
               
               Conread position:216-494
               
               
               Cow position:chr3:43233703-43233420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:217-444
               
               
               Cow position:chr3:1011686-1011453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 131

               
               
               Conread position:217-468
               
               
               Cow position:chr3:13380081-13380330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:218-385
               
               
               Cow position:chr3:53249678-53249515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:218-442
               
               
               Cow position:chr3:59474311-59474091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):201, 9

               
               
               Conread position:219-377
               
               
               Cow position:chr3:10695809-10695971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:219-387
               
               
               Cow position:chr3:75908101-75907936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:219-494
               
               
               Cow position:chr3:68707830-68708092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):224, 95

               
               
               Conread position:219-494
               
               
               Cow position:chr3:77365099-77365386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:220-379
               
               
               Cow position:chr3:27212508-27212354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:220-407
               
               
               Cow position:chr3:68289874-68289681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:220-492
               
               
               Cow position:chr3:83441704-83441969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 5

               
               
               Conread position:220-494
               
               
               Cow position:chr3:75480188-75479912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:221-429
               
               
               Cow position:chr3:76415692-76415921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:221-494
               
               
               Cow position:chr3:8061312-8061039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):6, 52

               
               
               Conread position:221-494
               
               
               Cow position:chr3:11063550-11063288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:222-398
               
               
               Cow position:chr3:64909903-64910082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:222-414
               
               
               Cow position:chr3:2016620-2016433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 25

               
               
               Conread position:222-417
               
               
               Cow position:chr3:4271553-4271367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:222-417
               
               
               Cow position:chr3:37641514-37641320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):178, 19

               
               
               Conread position:222-417
               
               
               Cow position:chr3:62186348-62186146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-424
               
               
               Cow position:chr3:79339387-79339592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:222-444
               
               
               Cow position:chr3:59933569-59933338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:222-453
               
               
               Cow position:chr3:5305991-5305755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:222-492
               
               
               Cow position:chr3:59630317-59630588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:222-494
               
               
               Cow position:chr3:3883630-3883907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:222-494
               
               
               Cow position:chr3:8349380-8349644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:222-494
               
               
               Cow position:chr3:22232478-22232740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:223-320
               
               
               Cow position:chr3:53508829-53508733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:223-351
               
               
               Cow position:chr3:2434549-2434677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:223-390
               
               
               Cow position:chr3:44218956-44218787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:223-407
               
               
               Cow position:chr3:17039798-17039617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 35

               
               
               Conread position:223-407
               
               
               Cow position:chr3:21694415-21694229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:223-411
               
               
               Cow position:chr3:77654108-77653929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:223-414
               
               
               Cow position:chr3:423559-423366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:223-417
               
               
               Cow position:chr3:13882330-13882526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 142

               
               
               Conread position:223-417
               
               
               Cow position:chr3:59947854-59947660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:223-430
               
               
               Cow position:chr3:28323397-28323198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):188, 15

               
               
               Conread position:223-442
               
               
               Cow position:chr3:5703365-5703147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:223-443
               
               
               Cow position:chr3:28896834-28897051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:223-468
               
               
               Cow position:chr3:55819936-55819699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:223-469
               
               
               Cow position:chr3:45211492-45211245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):93, 224

               
               
               Conread position:223-488
               
               
               Cow position:chr3:59299766-59299493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:223-494
               
               
               Cow position:chr3:1037216-1036938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:223-494
               
               
               Cow position:chr3:69785431-69785715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:223-494
               
               
               Cow position:chr3:71238339-71238068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:224-407
               
               
               Cow position:chr3:80541409-80541223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:224-442
               
               
               Cow position:chr3:73467812-73467600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 17

               
               
               Conread position:224-490
               
               
               Cow position:chr3:57274245-57273981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 54

               
               
               Conread position:225-345
               
               
               Cow position:chr3:35168117-35168230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:225-387
               
               
               Cow position:chr3:61171173-61171344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:225-441
               
               
               Cow position:chr3:73589581-73589801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:225-441
               
               
               Cow position:chr3:79272390-79272603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):132, 92

               
               
               Conread position:225-442
               
               
               Cow position:chr3:25904854-25905080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:225-442
               
               
               Cow position:chr3:75173414-75173611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):194, 42

               
               
               Conread position:225-442
               
               
               Cow position:chr3:81234574-81234358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):194, 93

               
               
               Conread position:225-493
               
               
               Cow position:chr3:78077377-78077102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:225-494
               
               
               Cow position:chr3:1785038-1785332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:225-494
               
               
               Cow position:chr3:13353550-13353273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 177

               
               
               Conread position:225-494
               
               
               Cow position:chr3:30940992-30940724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:225-494
               
               
               Cow position:chr3:31804583-31804850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):8, 82

               
               
               Conread position:225-494
               
               
               Cow position:chr3:72474108-72473824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:225-496
               
               
               Cow position:chr3:17331904-17331636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:226-382
               
               
               Cow position:chr3:20888477-20888633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:226-406
               
               
               Cow position:chr3:39812244-39812053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:226-414
               
               
               Cow position:chr3:66120899-66120704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:226-494
               
               
               Cow position:chr3:3985501-3985239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):217, 76

               
               
               Conread position:226-494
               
               
               Cow position:chr3:31349924-31350194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):193, 22

               
               
               Conread position:226-494
               
               
               Cow position:chr3:58764902-58765167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):193, 15

               
               
               Conread position:227-317
               
               
               Cow position:chr3:24584962-24585056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:227-337
               
               
               Cow position:chr3:47735406-47735299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:227-364
               
               
               Cow position:chr3:43091274-43091139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:227-384
               
               
               Cow position:chr3:58497844-58497685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr3:58562885-58562715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:227-391
               
               
               Cow position:chr3:29807916-29807762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr3:32248198-32248031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-399
               
               
               Cow position:chr3:10844198-10844364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr3:57641987-57641813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:227-399
               
               
               Cow position:chr3:57790797-57790626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:227-406
               
               
               Cow position:chr3:68094338-68094150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:227-406
               
               
               Cow position:chr3:76024687-76024515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr3:21959849-21959664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:227-413
               
               
               Cow position:chr3:79207531-79207703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:227-414
               
               
               Cow position:chr3:20158258-20158066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr3:28883976-28884163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:227-414
               
               
               Cow position:chr3:76300958-76300768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr3:9025896-9026091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 158

               
               
               Conread position:227-417
               
               
               Cow position:chr3:15859198-15859384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 87

               
               
               Conread position:227-417
               
               
               Cow position:chr3:54903751-54903559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr3:59885715-59885535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:227-417
               
               
               Cow position:chr3:80958325-80958516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 162

               
               
               Conread position:227-417
               
               
               Cow position:chr3:81666981-81666794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:227-422
               
               
               Cow position:chr3:26337832-26338031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 137

               
               
               Conread position:227-424
               
               
               Cow position:chr3:56678162-56678361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:227-427
               
               
               Cow position:chr3:38331427-38331625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-431
               
               
               Cow position:chr3:25290026-25289825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:227-431
               
               
               Cow position:chr3:51150314-51150108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:227-431
               
               
               Cow position:chr3:73701680-73701484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):161, 13

               
               
               Conread position:227-438
               
               
               Cow position:chr3:12669323-12669109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 150

               
               
               Conread position:227-440
               
               
               Cow position:chr3:75050438-75050646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:227-441
               
               
               Cow position:chr3:22924196-22924405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr3:5040119-5040338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 178

               
               
               Conread position:227-442
               
               
               Cow position:chr3:11229187-11229396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):192, 36

               
               
               Conread position:227-442
               
               
               Cow position:chr3:15051768-15051979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):149, 106

               
               
               Conread position:227-442
               
               
               Cow position:chr3:48900146-48900363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 195

               
               
               Conread position:227-442
               
               
               Cow position:chr3:63180048-63179826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:227-442
               
               
               Cow position:chr3:68004522-68004733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:227-442
               
               
               Cow position:chr3:69650714-69650920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:227-442
               
               
               Cow position:chr3:71423384-71423582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:227-442
               
               
               Cow position:chr3:71496945-71497169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr3:77276280-77276489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:227-444
               
               
               Cow position:chr3:66631159-66631385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:227-449
               
               
               Cow position:chr3:8813920-8814151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:227-452
               
               
               Cow position:chr3:44207693-44207926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:227-479
               
               
               Cow position:chr3:48810454-48810714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:227-480
               
               
               Cow position:chr3:45700986-45700732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):189, 89

               
               
               Conread position:227-486
               
               
               Cow position:chr3:76270073-76269816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:227-490
               
               
               Cow position:chr3:51608999-51609271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:227-490
               
               
               Cow position:chr3:65969358-65969077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-492
               
               
               Cow position:chr3:11253979-11254245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 227

               
               
               Conread position:227-492
               
               
               Cow position:chr3:51403080-51402822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:227-492
               
               
               Cow position:chr3:58134500-58134774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 98

               
               
               Conread position:227-492
               
               
               Cow position:chr3:59605025-59604758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-493
               
               
               Cow position:chr3:3656699-3656426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:227-493
               
               
               Cow position:chr3:54946305-54946041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):192, 35

               
               
               Conread position:227-494
               
               
               Cow position:chr3:525510-525256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):195, 41

               
               
               Conread position:227-494
               
               
               Cow position:chr3:17058363-17058629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr3:21014770-21015049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:227-494
               
               
               Cow position:chr3:22221510-22221231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):173, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr3:23168883-23169155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:227-494
               
               
               Cow position:chr3:23471279-23471555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:227-494
               
               
               Cow position:chr3:26970995-26970739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):192, 35

               
               
               Conread position:227-494
               
               
               Cow position:chr3:53738998-53739274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:227-494
               
               
               Cow position:chr3:58527561-58527305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):216, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr3:62046855-62046572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr3:71247197-71246936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):156, 37

               
               
               Conread position:227-494
               
               
               Cow position:chr3:77188627-77188348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:227-496
               
               
               Cow position:chr3:19900840-19900570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 132

               
               
               Conread position:228-351
               
               
               Cow position:chr3:3887459-3887579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:228-351
               
               
               Cow position:chr3:75711693-75711565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:228-387
               
               
               Cow position:chr3:31896771-31896932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:228-395
               
               
               Cow position:chr3:24922926-24922764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:228-395
               
               
               Cow position:chr3:52450604-52450442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr3:35079322-35079495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:228-407
               
               
               Cow position:chr3:63069178-63069361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-410
               
               
               Cow position:chr3:3401725-3401549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:228-410
               
               
               Cow position:chr3:67519993-67520164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:228-430
               
               
               Cow position:chr3:77171501-77171296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:228-442
               
               
               Cow position:chr3:65237208-65236993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:228-443
               
               
               Cow position:chr3:25477975-25477774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:228-494
               
               
               Cow position:chr3:5707027-5707303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:229-385
               
               
               Cow position:chr3:73410465-73410313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:229-440
               
               
               Cow position:chr3:56704133-56704350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:229-442
               
               
               Cow position:chr3:52457091-52456887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:229-492
               
               
               Cow position:chr3:57754293-57754565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 116

               
               
               Conread position:229-494
               
               
               Cow position:chr3:16752072-16752348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):90, 174

               
               
               Conread position:229-494
               
               
               Cow position:chr3:31361605-31361329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:229-494
               
               
               Cow position:chr3:36418305-36418555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-351
               
               
               Cow position:chr3:44415390-44415513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-367
               
               
               Cow position:chr3:77650763-77650628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:230-379
               
               
               Cow position:chr3:15057461-15057609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:230-382
               
               
               Cow position:chr3:78115409-78115563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr3:77227983-77227830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:230-390
               
               
               Cow position:chr3:74127319-74127487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 134

               
               
               Conread position:230-391
               
               
               Cow position:chr3:22903577-22903732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr3:48537547-48537382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:230-396
               
               
               Cow position:chr3:8526198-8526349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:230-396
               
               
               Cow position:chr3:56023204-56023048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 103

               
               
               Conread position:230-398
               
               
               Cow position:chr3:14211805-14211969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:230-399
               
               
               Cow position:chr3:11607998-11607835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr3:40957947-40958114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr3:44782519-44782352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr3:59699470-59699638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 111

               
               
               Conread position:230-411
               
               
               Cow position:chr3:32376993-32376814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr3:60186334-60186146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:230-416
               
               
               Cow position:chr3:6728140-6728334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:230-416
               
               
               Cow position:chr3:73943691-73943878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:230-417
               
               
               Cow position:chr3:13240892-13241081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 186

               
               
               Conread position:230-417
               
               
               Cow position:chr3:14770705-14770887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr3:14801925-14801739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:230-417
               
               
               Cow position:chr3:15795403-15795214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr3:32317648-32317836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr3:36411902-36412093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:230-417
               
               
               Cow position:chr3:37851677-37851491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:230-417
               
               
               Cow position:chr3:40212854-40213039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):111, 88

               
               
               Conread position:230-417
               
               
               Cow position:chr3:41366519-41366715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr3:44960126-44959937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr3:45822838-45823027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 93

               
               
               Conread position:230-417
               
               
               Cow position:chr3:47198945-47199132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:230-417
               
               
               Cow position:chr3:49741114-49741306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:230-417
               
               
               Cow position:chr3:54557847-54557669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr3:55318717-55318902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr3:55712612-55712435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr3:59317881-59317697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:230-417
               
               
               Cow position:chr3:65308272-65308459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:230-417
               
               
               Cow position:chr3:79271528-79271716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 67

               
               
               Conread position:230-417
               
               
               Cow position:chr3:79884299-79884491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 136

               
               
               Conread position:230-417
               
               
               Cow position:chr3:81616269-81616458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr3:83705354-83705542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:230-417
               
               
               Cow position:chr3:83770915-83770726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-418
               
               
               Cow position:chr3:17531551-17531744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:230-420
               
               
               Cow position:chr3:46259893-46259703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:230-420
               
               
               Cow position:chr3:52419128-52418931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 180

               
               
               Conread position:230-421
               
               
               Cow position:chr3:79398326-79398133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-424
               
               
               Cow position:chr3:2025384-2025186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-425
               
               
               Cow position:chr3:84137633-84137826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:230-427
               
               
               Cow position:chr3:18699927-18700127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-430
               
               
               Cow position:chr3:30180264-30180067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:230-430
               
               
               Cow position:chr3:59588825-59588619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 136

               
               
               Conread position:230-434
               
               
               Cow position:chr3:27246786-27246982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):186, 75

               
               
               Conread position:230-434
               
               
               Cow position:chr3:75966601-75966804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):119, 84

               
               
               Conread position:230-435
               
               
               Cow position:chr3:45744091-45743881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 94

               
               
               Conread position:230-436
               
               
               Cow position:chr3:4461309-4461509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:230-438
               
               
               Cow position:chr3:18831599-18831394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:230-438
               
               
               Cow position:chr3:54739719-54739911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):181, 40

               
               
               Conread position:230-439
               
               
               Cow position:chr3:55730285-55730495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-441
               
               
               Cow position:chr3:48253060-48252855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 76

               
               
               Conread position:230-442
               
               
               Cow position:chr3:3556729-3556514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr3:7581537-7581748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:230-442
               
               
               Cow position:chr3:20841698-20841904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:230-442
               
               
               Cow position:chr3:35624362-35624576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:230-442
               
               
               Cow position:chr3:46792564-46792354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:230-442
               
               
               Cow position:chr3:58452226-58452017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 130

               
               
               Conread position:230-442
               
               
               Cow position:chr3:59828207-59828424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr3:79824738-79824951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 64

               
               
               Conread position:230-442
               
               
               Cow position:chr3:83215450-83215231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-445
               
               
               Cow position:chr3:18479115-18479332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:230-446
               
               
               Cow position:chr3:23203048-23203267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 132

               
               
               Conread position:230-464
               
               
               Cow position:chr3:83454976-83455200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):189, 31

               
               
               Conread position:230-464
               
               
               Cow position:chr3:83889430-83889189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 180

               
               
               Conread position:230-485
               
               
               Cow position:chr3:36160019-36160275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):190, 49

               
               
               Conread position:230-490
               
               
               Cow position:chr3:34871749-34871480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-490
               
               
               Cow position:chr3:40100548-40100793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:230-490
               
               
               Cow position:chr3:64197007-64196739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:230-491
               
               
               Cow position:chr3:59391944-59392202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-493
               
               
               Cow position:chr3:15953901-15954174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr3:68587201-68586933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:230-494
               
               
               Cow position:chr3:210503-210228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr3:1830393-1830663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr3:2392788-2393051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):147, 88

               
               
               Conread position:230-494
               
               
               Cow position:chr3:3316627-3316901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 166

               
               
               Conread position:230-494
               
               
               Cow position:chr3:7337606-7337872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr3:9641736-9641477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 82

               
               
               Conread position:230-494
               
               
               Cow position:chr3:13301669-13301936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:230-494
               
               
               Cow position:chr3:17235023-17235298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr3:18059885-18059613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 127

               
               
               Conread position:230-494
               
               
               Cow position:chr3:18426519-18426788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):81, 159

               
               
               Conread position:230-494
               
               
               Cow position:chr3:23804683-23804428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr3:26904280-26904022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):143, 72

               
               
               Conread position:230-494
               
               
               Cow position:chr3:26992754-26992478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr3:36375357-36375630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr3:39661273-39661544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 173

               
               
               Conread position:230-494
               
               
               Cow position:chr3:44624998-44625252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr3:48241787-48241528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:230-494
               
               
               Cow position:chr3:48468357-48468094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):82, 217

               
               
               Conread position:230-494
               
               
               Cow position:chr3:49482533-49482795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr3:54049848-54050114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr3:59597355-59597095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:230-494
               
               
               Cow position:chr3:64280756-64281020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:230-494
               
               
               Cow position:chr3:67929078-67929349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:230-494
               
               
               Cow position:chr3:70333788-70334052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:230-494
               
               
               Cow position:chr3:71231579-71231310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 166

               
               
               Conread position:230-494
               
               
               Cow position:chr3:75080933-75080679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):189, 55

               
               
               Conread position:230-494
               
               
               Cow position:chr3:80597908-80597634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:230-494
               
               
               Cow position:chr3:80733669-80733931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 201

               
               
               Conread position:230-494
               
               
               Cow position:chr3:83491261-83490998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:230-496
               
               
               Cow position:chr3:3889396-3889661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-496
               
               
               Cow position:chr3:70896220-70895956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):179, 89

               
               
               Conread position:231-365
               
               
               Cow position:chr3:42933663-42933527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:231-370
               
               
               Cow position:chr3:21081200-21081344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:231-392
               
               
               Cow position:chr3:77665376-77665531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr3:47417390-47417557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr3:83325387-83325228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr3:3262643-3262821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr3:68624399-68624230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:231-405
               
               
               Cow position:chr3:12637684-12637516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr3:4518004-4518177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-407
               
               
               Cow position:chr3:59681727-59681899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr3:80910777-80910593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 127

               
               
               Conread position:231-417
               
               
               Cow position:chr3:20911231-20911415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:231-417
               
               
               Cow position:chr3:70333049-70333226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:231-422
               
               
               Cow position:chr3:56943750-56943936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:231-422
               
               
               Cow position:chr3:58540337-58540531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 160

               
               
               Conread position:231-430
               
               
               Cow position:chr3:26783327-26783526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:231-442
               
               
               Cow position:chr3:28902583-28902790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:231-442
               
               
               Cow position:chr3:30357689-30357491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:231-442
               
               
               Cow position:chr3:54067974-54067766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:231-442
               
               
               Cow position:chr3:59945307-59945093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr3:76267794-76268006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:231-466
               
               
               Cow position:chr3:24596253-24596480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):188, 32

               
               
               Conread position:231-467
               
               
               Cow position:chr3:3947211-3946984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):188, 54

               
               
               Conread position:231-483
               
               
               Cow position:chr3:11276420-11276658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:231-491
               
               
               Cow position:chr3:2396615-2396865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):218, 92

               
               
               Conread position:231-492
               
               
               Cow position:chr3:50768859-50768596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:231-492
               
               
               Cow position:chr3:83474934-83474655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr3:2518361-2518620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:231-494
               
               
               Cow position:chr3:18001366-18001112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr3:45882079-45881815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 210

               
               
               Conread position:231-494
               
               
               Cow position:chr3:58317763-58318042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr3:65058879-65058613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:231-496
               
               
               Cow position:chr3:48072706-48072972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:231-496
               
               
               Cow position:chr3:66014498-66014227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 200

               
               
               Conread position:232-320
               
               
               Cow position:chr3:623929-623841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-343
               
               
               Cow position:chr3:34938801-34938690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-358
               
               
               Cow position:chr3:49369788-49369665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-375
               
               
               Cow position:chr3:39967317-39967452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr3:19641244-19641073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr3:11198179-11198354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 53

               
               
               Conread position:232-407
               
               
               Cow position:chr3:24774821-24774658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:232-408
               
               
               Cow position:chr3:74050527-74050698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr3:57704511-57704335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr3:29891227-29891411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:232-414
               
               
               Cow position:chr3:65022482-65022292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-414
               
               
               Cow position:chr3:84807147-84807330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:232-415
               
               
               Cow position:chr3:47316199-47316382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 82

               
               
               Conread position:232-417
               
               
               Cow position:chr3:12899767-12899945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:232-422
               
               
               Cow position:chr3:29334232-29334424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:232-424
               
               
               Cow position:chr3:41863801-41863612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:232-424
               
               
               Cow position:chr3:63845119-63844927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:232-435
               
               
               Cow position:chr3:23818666-23818470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:232-439
               
               
               Cow position:chr3:67407188-67407394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-441
               
               
               Cow position:chr3:8522975-8523180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr3:53703768-53703994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 125

               
               
               Conread position:232-442
               
               
               Cow position:chr3:54435147-54434946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:232-443
               
               
               Cow position:chr3:74644739-74644525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):80, 131

               
               
               Conread position:232-448
               
               
               Cow position:chr3:73421304-73421530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:232-490
               
               
               Cow position:chr3:18687080-18686823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):187, 75

               
               
               Conread position:232-493
               
               
               Cow position:chr3:6182054-6182301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:232-493
               
               
               Cow position:chr3:26066166-26065916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:232-494
               
               
               Cow position:chr3:2506297-2506564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:232-494
               
               
               Cow position:chr3:16333983-16333712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 135

               
               
               Conread position:232-494
               
               
               Cow position:chr3:19711158-19711423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:232-494
               
               
               Cow position:chr3:27274706-27274441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr3:39873529-39873786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):189, 67

               
               
               Conread position:232-494
               
               
               Cow position:chr3:48459150-48459421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):187, 112

               
               
               Conread position:232-494
               
               
               Cow position:chr3:52487808-52487537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 121

               
               
               Conread position:232-494
               
               
               Cow position:chr3:53150512-53150240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 250

               
               
               Conread position:232-494
               
               
               Cow position:chr3:54100534-54100809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):83, 225

               
               
               Conread position:232-494
               
               
               Cow position:chr3:65413087-65413368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 251

               
               
               Conread position:232-494
               
               
               Cow position:chr3:68156906-68156646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:232-494
               
               
               Cow position:chr3:76156165-76155899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-496
               
               
               Cow position:chr3:60264543-60264808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):187, 27

               
               
               Conread position:233-379
               
               
               Cow position:chr3:24370569-24370434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:233-383
               
               
               Cow position:chr3:22821031-22820884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 68

               
               
               Conread position:233-391
               
               
               Cow position:chr3:58929354-58929514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:233-399
               
               
               Cow position:chr3:54905784-54905627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr3:68565990-68565827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:233-409
               
               
               Cow position:chr3:43895885-43896057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr3:54781815-54782005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):72, 121

               
               
               Conread position:233-417
               
               
               Cow position:chr3:51233926-51234101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-418
               
               
               Cow position:chr3:49787734-49787553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:233-424
               
               
               Cow position:chr3:46559538-46559725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:233-426
               
               
               Cow position:chr3:41510756-41510559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:233-439
               
               
               Cow position:chr3:1517335-1517540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:233-442
               
               
               Cow position:chr3:7662035-7661825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):86, 179

               
               
               Conread position:233-442
               
               
               Cow position:chr3:75107950-75107743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):186, 76

               
               
               Conread position:233-442
               
               
               Cow position:chr3:82366307-82366098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):132, 171

               
               
               Conread position:233-444
               
               
               Cow position:chr3:2648330-2648543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:233-472
               
               
               Cow position:chr3:14547177-14546941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):186, 85

               
               
               Conread position:233-490
               
               
               Cow position:chr3:48363247-48362992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:233-492
               
               
               Cow position:chr3:19682884-19682605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:233-492
               
               
               Cow position:chr3:70761945-70762209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:233-493
               
               
               Cow position:chr3:9117212-9116940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 181

               
               
               Conread position:233-494
               
               
               Cow position:chr3:2630939-2630706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:233-494
               
               
               Cow position:chr3:12705369-12705634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):186, 84

               
               
               Conread position:233-494
               
               
               Cow position:chr3:24872869-24872626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr3:54506884-54506615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 86

               
               
               Conread position:233-494
               
               
               Cow position:chr3:57764391-57764139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):186, 40

               
               
               Conread position:233-494
               
               
               Cow position:chr3:73237361-73237105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):186, 79

               
               
               Conread position:233-494
               
               
               Cow position:chr3:78945644-78945923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):73, 205

               
               
               Conread position:233-495
               
               
               Cow position:chr3:76138637-76138391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:234-392
               
               
               Cow position:chr3:4071592-4071751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:234-392
               
               
               Cow position:chr3:16107198-16107347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):119, 33

               
               
               Conread position:234-392
               
               
               Cow position:chr3:75777892-75778041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:234-396
               
               
               Cow position:chr3:8147346-8147510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:234-397
               
               
               Cow position:chr3:59702351-59702183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:234-397
               
               
               Cow position:chr3:62789773-62789940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 131

               
               
               Conread position:234-398
               
               
               Cow position:chr3:18471480-18471315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:234-398
               
               
               Cow position:chr3:55105969-55106135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:234-399
               
               
               Cow position:chr3:82175686-82175520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 124

               
               
               Conread position:234-406
               
               
               Cow position:chr3:3453759-3453585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr3:19611176-19611346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:234-407
               
               
               Cow position:chr3:67942356-67942531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:234-410
               
               
               Cow position:chr3:562612-562792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:234-416
               
               
               Cow position:chr3:33330011-33329813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr3:7381655-7381834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:234-417
               
               
               Cow position:chr3:53428741-53428922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-424
               
               
               Cow position:chr3:23640516-23640330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:234-424
               
               
               Cow position:chr3:84154582-84154402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-439
               
               
               Cow position:chr3:19793074-19792877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:234-442
               
               
               Cow position:chr3:8393516-8393319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:234-442
               
               
               Cow position:chr3:14194013-14194208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):185, 20

               
               
               Conread position:234-442
               
               
               Cow position:chr3:15153865-15153660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-442
               
               
               Cow position:chr3:17694825-17695033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 193

               
               
               Conread position:234-446
               
               
               Cow position:chr3:48851790-48852006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-458
               
               
               Cow position:chr3:52845732-52845508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 83

               
               
               Conread position:234-461
               
               
               Cow position:chr3:38864295-38864077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):153, 67

               
               
               Conread position:234-467
               
               
               Cow position:chr3:53384103-53384341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:234-469
               
               
               Cow position:chr3:45183644-45183899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 138

               
               
               Conread position:234-480
               
               
               Cow position:chr3:13329616-13329850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 72

               
               
               Conread position:234-490
               
               
               Cow position:chr3:51578147-51578405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:234-493
               
               
               Cow position:chr3:53790365-53790624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:234-493
               
               
               Cow position:chr3:65019676-65019953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:234-494
               
               
               Cow position:chr3:15443549-15443818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:234-494
               
               
               Cow position:chr3:23920250-23920517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:234-494
               
               
               Cow position:chr3:38035411-38035679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):84, 114

               
               
               Conread position:234-494
               
               
               Cow position:chr3:45667166-45667433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:234-494
               
               
               Cow position:chr3:46005838-46006103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 147

               
               
               Conread position:234-494
               
               
               Cow position:chr3:52651903-52652170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):154, 90

               
               
               Conread position:234-494
               
               
               Cow position:chr3:53318586-53318316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:234-494
               
               
               Cow position:chr3:80072320-80072038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:235-353
               
               
               Cow position:chr3:75974903-75975023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-380
               
               
               Cow position:chr3:29944036-29943888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:235-391
               
               
               Cow position:chr3:18764281-18764122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:235-391
               
               
               Cow position:chr3:22078254-22078096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:235-392
               
               
               Cow position:chr3:2636758-2636910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:235-392
               
               
               Cow position:chr3:23734913-23735068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:235-392
               
               
               Cow position:chr3:44725044-44724881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr3:60371160-60370997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:235-399
               
               
               Cow position:chr3:77098648-77098810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr3:70402814-70402645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr3:635354-635175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:235-414
               
               
               Cow position:chr3:11027453-11027272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr3:61680493-61680315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-414
               
               
               Cow position:chr3:64800371-64800552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:235-414
               
               
               Cow position:chr3:78258574-78258757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):69, 114

               
               
               Conread position:235-417
               
               
               Cow position:chr3:35075048-35074873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr3:43388949-43389133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr3:49344868-49344688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:235-417
               
               
               Cow position:chr3:79893320-79893503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-417
               
               
               Cow position:chr3:84174480-84174296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:235-424
               
               
               Cow position:chr3:58101851-58101666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:235-426
               
               
               Cow position:chr3:80173175-80172987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 98

               
               
               Conread position:235-430
               
               
               Cow position:chr3:2638109-2637907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:235-431
               
               
               Cow position:chr3:54350258-54350458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:235-437
               
               
               Cow position:chr3:986191-985986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:235-437
               
               
               Cow position:chr3:18393224-18393420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:235-438
               
               
               Cow position:chr3:44594799-44594598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:235-440
               
               
               Cow position:chr3:14517905-14518108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:235-442
               
               
               Cow position:chr3:22888838-22889048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:235-444
               
               
               Cow position:chr3:38248832-38248618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:235-445
               
               
               Cow position:chr3:4120195-4120400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):184, 73

               
               
               Conread position:235-447
               
               
               Cow position:chr3:53604568-53604782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 127

               
               
               Conread position:235-463
               
               
               Cow position:chr3:39605837-39606063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 112

               
               
               Conread position:235-466
               
               
               Cow position:chr3:23131992-23132222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 210

               
               
               Conread position:235-468
               
               
               Cow position:chr3:31309178-31309409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:235-474
               
               
               Cow position:chr3:33002561-33002319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:235-480
               
               
               Cow position:chr3:18459361-18459595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:235-492
               
               
               Cow position:chr3:175119-174861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):176, 39

               
               
               Conread position:235-493
               
               
               Cow position:chr3:38828927-38828681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:235-493
               
               
               Cow position:chr3:44960842-44961077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):184, 56

               
               
               Conread position:235-494
               
               
               Cow position:chr3:14553048-14552788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):184, 72

               
               
               Conread position:235-494
               
               
               Cow position:chr3:15228665-15228909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):184, 44

               
               
               Conread position:235-494
               
               
               Cow position:chr3:15950741-15951000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:235-494
               
               
               Cow position:chr3:17456091-17456356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:235-494
               
               
               Cow position:chr3:19586040-19585773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):184, 162

               
               
               Conread position:235-494
               
               
               Cow position:chr3:21866862-21867125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 58

               
               
               Conread position:235-494
               
               
               Cow position:chr3:22165239-22165506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 166

               
               
               Conread position:235-494
               
               
               Cow position:chr3:24468208-24468467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:235-494
               
               
               Cow position:chr3:35055800-35056067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-494
               
               
               Cow position:chr3:55189574-55189845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:235-494
               
               
               Cow position:chr3:55970691-55970418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:235-494
               
               
               Cow position:chr3:72342424-72342156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:235-494
               
               
               Cow position:chr3:74533510-74533260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):184, 77

               
               
               Conread position:235-494
               
               
               Cow position:chr3:75853159-75853418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):184, 38

               
               
               Conread position:235-494
               
               
               Cow position:chr3:78092335-78092602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 123

               
               
               Conread position:235-494
               
               
               Cow position:chr3:83787618-83787348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:235-496
               
               
               Cow position:chr3:23105189-23105456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 72

               
               
               Conread position:235-496
               
               
               Cow position:chr3:39969687-39969956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 83

               
               
               Conread position:236-397
               
               
               Cow position:chr3:25702156-25702327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:236-411
               
               
               Cow position:chr3:4931655-4931840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:236-414
               
               
               Cow position:chr3:83672030-83671853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:236-417
               
               
               Cow position:chr3:29234503-29234687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:236-417
               
               
               Cow position:chr3:45314527-45314339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:236-424
               
               
               Cow position:chr3:25735728-25735919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:236-430
               
               
               Cow position:chr3:9718074-9718270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:236-493
               
               
               Cow position:chr3:70609800-70609537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:236-494
               
               
               Cow position:chr3:73395290-73395033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):183, 53

               
               
               Conread position:238-381
               
               
               Cow position:chr3:83921489-83921357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:238-391
               
               
               Cow position:chr3:80023142-80023290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:238-493
               
               
               Cow position:chr3:74601285-74601024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:238-494
               
               
               Cow position:chr3:17221960-17222234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr3:49679307-49679043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:238-494
               
               
               Cow position:chr3:55124112-55124372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:238-494
               
               
               Cow position:chr3:74846552-74846800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):181, 59

               
               
               Conread position:239-417
               
               
               Cow position:chr3:1028474-1028653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:239-424
               
               
               Cow position:chr3:81400934-81401107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:239-434
               
               
               Cow position:chr3:64010636-64010835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:239-461
               
               
               Cow position:chr3:23753656-23753442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):177, 69

               
               
               Conread position:239-489
               
               
               Cow position:chr3:75238633-75238374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:239-494
               
               
               Cow position:chr3:60597709-60597453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:240-320
               
               
               Cow position:chr3:27670644-27670564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:73
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-337
               
               
               Cow position:chr3:5706442-5706543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-373
               
               
               Cow position:chr3:34392054-34392182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-386
               
               
               Cow position:chr3:69849127-69849267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-388
               
               
               Cow position:chr3:40343867-40344006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr3:621612-621454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-396
               
               
               Cow position:chr3:39996723-39996872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):117, 6

               
               
               Conread position:240-397
               
               
               Cow position:chr3:2637116-2636964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:240-397
               
               
               Cow position:chr3:12090848-12090688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:240-397
               
               
               Cow position:chr3:32436809-32436653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:240-397
               
               
               Cow position:chr3:72027810-72027652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-397
               
               
               Cow position:chr3:84250653-84250817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr3:74515165-74515324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:240-405
               
               
               Cow position:chr3:26393128-26393293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 90

               
               
               Conread position:240-406
               
               
               Cow position:chr3:77582277-77582111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:240-407
               
               
               Cow position:chr3:19044597-19044761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:240-409
               
               
               Cow position:chr3:26977708-26977537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:240-409
               
               
               Cow position:chr3:34164117-34164281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr3:68648348-68648175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-414
               
               
               Cow position:chr3:58614635-58614454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:240-414
               
               
               Cow position:chr3:76056117-76056287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr3:76168458-76168637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:240-424
               
               
               Cow position:chr3:49996546-49996733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 124

               
               
               Conread position:240-425
               
               
               Cow position:chr3:56948925-56949099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr3:66884859-66885041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 66

               
               
               Conread position:240-426
               
               
               Cow position:chr3:82424910-82425090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):183, 7

               
               
               Conread position:240-431
               
               
               Cow position:chr3:6886397-6886201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:240-439
               
               
               Cow position:chr3:15160688-15160492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-442
               
               
               Cow position:chr3:9121013-9120814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:240-442
               
               
               Cow position:chr3:14601541-14601742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):160, 28

               
               
               Conread position:240-442
               
               
               Cow position:chr3:37041587-37041388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:240-442
               
               
               Cow position:chr3:53910277-53910078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:240-442
               
               
               Cow position:chr3:68303489-68303285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:240-442
               
               
               Cow position:chr3:83988705-83988502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:240-443
               
               
               Cow position:chr3:73335450-73335251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-449
               
               
               Cow position:chr3:4549188-4548989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):179, 30

               
               
               Conread position:240-460
               
               
               Cow position:chr3:8540672-8540466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:240-460
               
               
               Cow position:chr3:83699697-83699918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:240-471
               
               
               Cow position:chr3:2538408-2538191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 80

               
               
               Conread position:240-471
               
               
               Cow position:chr3:6299629-6299400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:240-490
               
               
               Cow position:chr3:20802469-20802708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:240-490
               
               
               Cow position:chr3:53222183-53221929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 77

               
               
               Conread position:240-490
               
               
               Cow position:chr3:53875591-53875846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:240-492
               
               
               Cow position:chr3:61224578-61224833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:240-493
               
               
               Cow position:chr3:9662998-9663259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-493
               
               
               Cow position:chr3:47753408-47753136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-493
               
               
               Cow position:chr3:59610548-59610808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):176, 61

               
               
               Conread position:240-494
               
               
               Cow position:chr3:4319890-4319623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr3:10958073-10958331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr3:14599091-14598862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr3:15159200-15158954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:240-494
               
               
               Cow position:chr3:17936676-17936929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:240-494
               
               
               Cow position:chr3:23408193-23408440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):176, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr3:30463005-30463258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:240-494
               
               
               Cow position:chr3:32585324-32585064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 233

               
               
               Conread position:240-494
               
               
               Cow position:chr3:59035214-59034949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr3:68616164-68616415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr3:74234352-74234102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 21

               
               
               Conread position:240-494
               
               
               Cow position:chr3:75158526-75158271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr3:75608659-75608408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):179, 71

               
               
               Conread position:240-494
               
               
               Cow position:chr3:78093222-78093472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 32

               
               
               Conread position:240-495
               
               
               Cow position:chr3:7330967-7331202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-496
               
               
               Cow position:chr3:55177580-55177841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:241-399
               
               
               Cow position:chr3:59272001-59271844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr3:22868546-22868721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:241-414
               
               
               Cow position:chr3:24220410-24220580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:241-417
               
               
               Cow position:chr3:46305632-46305456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 126

               
               
               Conread position:241-424
               
               
               Cow position:chr3:20065977-20066167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:241-430
               
               
               Cow position:chr3:27286685-27286499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):178, 79

               
               
               Conread position:241-431
               
               
               Cow position:chr3:31115108-31115290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):178, 76

               
               
               Conread position:241-437
               
               
               Cow position:chr3:63860440-63860639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 120

               
               
               Conread position:241-442
               
               
               Cow position:chr3:11281939-11281735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 122

               
               
               Conread position:241-442
               
               
               Cow position:chr3:75570276-75570483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:241-444
               
               
               Cow position:chr3:33252722-33252922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:241-472
               
               
               Cow position:chr3:71478762-71478535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:241-473
               
               
               Cow position:chr3:21112472-21112704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:241-481
               
               
               Cow position:chr3:19709275-19709050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:241-488
               
               
               Cow position:chr3:10668709-10668962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:241-488
               
               
               Cow position:chr3:74754485-74754240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):178, 62

               
               
               Conread position:241-490
               
               
               Cow position:chr3:10591343-10591603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):143, 57

               
               
               Conread position:241-492
               
               
               Cow position:chr3:22675937-22676185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:241-494
               
               
               Cow position:chr3:7763828-7763568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:241-494
               
               
               Cow position:chr3:44932682-44932424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):178, 78

               
               
               Conread position:241-494
               
               
               Cow position:chr3:45647836-45647589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:241-494
               
               
               Cow position:chr3:49328104-49327853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:241-494
               
               
               Cow position:chr3:49363277-49363026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 60

               
               
               Conread position:241-494
               
               
               Cow position:chr3:54373687-54373947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:241-494
               
               
               Cow position:chr3:59040740-59040480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:241-494
               
               
               Cow position:chr3:71474237-71474497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:241-494
               
               
               Cow position:chr3:73837548-73837805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 77

               
               
               Conread position:241-494
               
               
               Cow position:chr3:82019672-82019931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:242-417
               
               
               Cow position:chr3:70756470-70756647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-424
               
               
               Cow position:chr3:82195653-82195473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:242-430
               
               
               Cow position:chr3:10372425-10372252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):177, 21

               
               
               Conread position:242-439
               
               
               Cow position:chr3:56476843-56476654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):177, 41

               
               
               Conread position:242-442
               
               
               Cow position:chr3:20021437-20021238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):174, 76

               
               
               Conread position:242-494
               
               
               Cow position:chr3:53271002-53270741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr3:67930001-67930271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 147

               
               
               Conread position:242-494
               
               
               Cow position:chr3:76922504-76922751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:243-493
               
               
               Cow position:chr3:29813394-29813157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:243-494
               
               
               Cow position:chr3:12978447-12978704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):70, 82

               
               
               Conread position:244-399
               
               
               Cow position:chr3:53552817-53552967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-493
               
               
               Cow position:chr3:80565132-80564876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:245-398
               
               
               Cow position:chr3:56754369-56754519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 80

               
               
               Conread position:245-411
               
               
               Cow position:chr3:62312964-62312797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:245-411
               
               
               Cow position:chr3:62370223-62370056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:245-414
               
               
               Cow position:chr3:83934890-83934723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):116, 83

               
               
               Conread position:245-417
               
               
               Cow position:chr3:83199679-83199506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:245-442
               
               
               Cow position:chr3:26603380-26603586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:245-442
               
               
               Cow position:chr3:42796352-42796547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:245-445
               
               
               Cow position:chr3:1889940-1890143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 178

               
               
               Conread position:245-465
               
               
               Cow position:chr3:48483344-48483123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:246-417
               
               
               Cow position:chr3:61023855-61024028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:247-406
               
               
               Cow position:chr3:44534370-44534529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:247-414
               
               
               Cow position:chr3:8556677-8556836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:247-416
               
               
               Cow position:chr3:72255254-72255423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:247-442
               
               
               Cow position:chr3:57577860-57577666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:247-492
               
               
               Cow position:chr3:79196927-79196671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 248

               
               
               Conread position:247-493
               
               
               Cow position:chr3:59000599-59000839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:247-494
               
               
               Cow position:chr3:2675196-2674940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:247-494
               
               
               Cow position:chr3:81087472-81087721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 158

               
               
               Conread position:248-391
               
               
               Cow position:chr3:19793427-19793569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 97

               
               
               Conread position:248-399
               
               
               Cow position:chr3:10115458-10115311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:248-425
               
               
               Cow position:chr3:83812441-83812258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:248-442
               
               
               Cow position:chr3:66900564-66900764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:248-443
               
               
               Cow position:chr3:74787588-74787399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:248-485
               
               
               Cow position:chr3:40145630-40145387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 210

               
               
               Conread position:248-490
               
               
               Cow position:chr3:53046495-53046747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 191

               
               
               Conread position:248-493
               
               
               Cow position:chr3:74079475-74079726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):168, 66

               
               
               Conread position:248-494
               
               
               Cow position:chr3:19626345-19626598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:249-385
               
               
               Cow position:chr3:14589068-14589205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:249-442
               
               
               Cow position:chr3:7566259-7566448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):167, 65

               
               
               Conread position:249-485
               
               
               Cow position:chr3:48477881-48478112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:250-406
               
               
               Cow position:chr3:5003793-5003639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:250-442
               
               
               Cow position:chr3:53083822-53084019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:250-469
               
               
               Cow position:chr3:3275756-3275543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):142, 64

               
               
               Conread position:250-492
               
               
               Cow position:chr3:18607824-18607575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):169, 54

               
               
               Conread position:250-494
               
               
               Cow position:chr3:70334531-70334783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:251-406
               
               
               Cow position:chr3:5737906-5737757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:251-492
               
               
               Cow position:chr3:11987488-11987242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):106, 55

               
               
               Conread position:252-442
               
               
               Cow position:chr3:2484161-2483973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:252-494
               
               
               Cow position:chr3:68627528-68627775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 65

               
               
               Conread position:253-390
               
               
               Cow position:chr3:72556923-72556791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:253-449
               
               
               Cow position:chr3:11640894-11640695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:254-494
               
               
               Cow position:chr3:84250392-84250633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):146, 53

               
               
               Conread position:255-424
               
               
               Cow position:chr3:70431590-70431418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:255-494
               
               
               Cow position:chr3:60265099-60265329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):164, 63

               
               
               Conread position:256-404
               
               
               Cow position:chr3:49732895-49733045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:256-442
               
               
               Cow position:chr3:35239166-35238982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:259-443
               
               
               Cow position:chr3:82123401-82123580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):160, 16

               
               
               Conread position:259-486
               
               
               Cow position:chr3:27976370-27976607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:260-494
               
               
               Cow position:chr3:52608332-52608091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):159, 53

               
               
               Conread position:263-494
               
               
               Cow position:chr3:74134855-74134611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:265-431
               
               
               Cow position:chr3:19788685-19788850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 52

               
               
               Conread position:265-494
               
               
               Cow position:chr3:44102113-44101883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:265-494
               
               
               Cow position:chr3:72391234-72390997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:266-442
               
               
               Cow position:chr3:16505339-16505506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:266-490
               
               
               Cow position:chr3:73820217-73820455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:270-411
               
               
               Cow position:chr3:35582982-35582840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:271-494
               
               
               Cow position:chr3:26681674-26681892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:272-427
               
               
               Cow position:chr3:28870946-28870791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:273-390
               
               
               Cow position:chr3:19435255-19435138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:273-494
               
               
               Cow position:chr3:12711773-12712006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:273-495
               
               
               Cow position:chr3:15080529-15080738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):150, 25

               
               
               Conread position:274-410
               
               
               Cow position:chr3:3292602-3292466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:274-411
               
               
               Cow position:chr3:31352738-31352874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:274-417
               
               
               Cow position:chr3:25037857-25037997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:274-439
               
               
               Cow position:chr3:40961691-40961538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:274-490
               
               
               Cow position:chr3:77271141-77271358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):145, 49

               
               
               Conread position:274-494
               
               
               Cow position:chr3:38783745-38783528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:275-460
               
               
               Cow position:chr3:15237553-15237743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:276-496
               
               
               Cow position:chr3:70565599-70565828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:280-494
               
               
               Cow position:chr3:75045739-75045965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:281-493
               
               
               Cow position:chr3:32409350-32409123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 198

               
               
               Conread position:283-494
               
               
               Cow position:chr3:73709175-73708959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):136, 56

               
               
               Conread position:285-415
               
               
               Cow position:chr3:47284937-47284810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:286-417
               
               
               Cow position:chr3:48783474-48783344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:288-490
               
               
               Cow position:chr3:79645304-79645525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:293-491
               
               
               Cow position:chr3:73461083-73460878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:295-492
               
               
               Cow position:chr3:15173198-15172991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 179

               
               
               Conread position:296-494
               
               
               Cow position:chr3:3818900-3818706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:296-496
               
               
               Cow position:chr3:48296812-48296619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:299-494
               
               
               Cow position:chr3:20677729-20677923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):120, 101

               
               
               Conread position:300-494
               
               
               Cow position:chr3:34669621-34669815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:302-414
               
               
               Cow position:chr3:27670524-27670411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:302-438
               
               
               Cow position:chr3:61467079-61467217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr3:55984208-55984068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 82

               
               
               Conread position:302-442
               
               
               Cow position:chr3:74801958-74802097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:302-452
               
               
               Cow position:chr3:77589624-77589469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:302-487
               
               
               Cow position:chr3:4481052-4480858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-490
               
               
               Cow position:chr3:17447505-17447696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 98

               
               
               Conread position:302-492
               
               
               Cow position:chr3:22716186-22716388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:302-493
               
               
               Cow position:chr3:74900533-74900726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 47

               
               
               Conread position:302-494
               
               
               Cow position:chr3:10104150-10103958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:302-494
               
               
               Cow position:chr3:13507580-13507376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr3:44330327-44330527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr3:62789067-62789268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:302-494
               
               
               Cow position:chr3:70900000-70899806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:302-494
               
               
               Cow position:chr3:84175714-84175914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:302-495
               
               
               Cow position:chr3:53508721-53508528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:303-413
               
               
               Cow position:chr3:20175157-20175047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr3:26874700-26874504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr3:35621411-35621214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 162

               
               
               Conread position:303-494
               
               
               Cow position:chr3:56059918-56059719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:303-494
               
               
               Cow position:chr3:59621539-59621735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:304-421
               
               
               Cow position:chr3:53256635-53256520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:304-443
               
               
               Cow position:chr3:21997682-21997820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:305-494
               
               
               Cow position:chr3:15506556-15506357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:305-494
               
               
               Cow position:chr3:73442989-73443175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 65

               
               
               Conread position:307-494
               
               
               Cow position:chr3:67704649-67704454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:308-438
               
               
               Cow position:chr3:64648594-64648465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:308-442
               
               
               Cow position:chr3:24372025-24371891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):111, 89

               
               
               Conread position:308-494
               
               
               Cow position:chr3:55835716-55835913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 166

               
               
               Conread position:308-494
               
               
               Cow position:chr3:80053440-80053627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:308-494
               
               
               Cow position:chr3:80581759-80581576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 92

               
               
               Conread position:309-480
               
               
               Cow position:chr3:33693922-33693746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:312-492
               
               
               Cow position:chr3:116290-116106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:313-494
               
               
               Cow position:chr3:3738580-3738399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):159, 84

               
               
               Conread position:313-494
               
               
               Cow position:chr3:74243091-74242905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:318-492
               
               
               Cow position:chr3:59208888-59208728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:318-494
               
               
               Cow position:chr3:55271951-55272135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr3:26218960-26219140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:323-494
               
               
               Cow position:chr3:38691317-38691495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:323-494
               
               
               Cow position:chr3:79292917-79292741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:324-430
               
               
               Cow position:chr3:16601530-16601423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-442
               
               
               Cow position:chr3:41652464-41652345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-442
               
               
               Cow position:chr3:51349911-51349792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-490
               
               
               Cow position:chr3:58767351-58767175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:325-425
               
               
               Cow position:chr3:60595588-60595487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr3:5097290-5097118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr3:29887337-29887512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:329-494
               
               
               Cow position:chr3:59799331-59799159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:331-494
               
               
               Cow position:chr3:55109532-55109705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:333-494
               
               
               Cow position:chr3:3472119-3471949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:333-494
               
               
               Cow position:chr3:58968824-58968988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:339-490
               
               
               Cow position:chr3:20205326-20205475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 102

               
               
               Conread position:190-414
               
               
               Cow position:chr4:65959583-65959805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:204-414
               
               
               Cow position:chr4:54937314-54937096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:205-490
               
               
               Cow position:chr4:46136971-46136683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 97

               
               
               Conread position:212-384
               
               
               Cow position:chr4:65351446-65351621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:212-413
               
               
               Cow position:chr4:27657190-27656993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:214-314
               
               
               Cow position:chr4:49902881-49902981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-396
               
               
               Cow position:chr4:8675578-8675402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):143, 26

               
               
               Conread position:214-440
               
               
               Cow position:chr4:38949313-38949549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 138

               
               
               Conread position:214-494
               
               
               Cow position:chr4:8182415-8182712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:216-469
               
               
               Cow position:chr4:11187665-11187408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:216-494
               
               
               Cow position:chr4:41370731-41371013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:217-490
               
               
               Cow position:chr4:49212536-49212803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:217-492
               
               
               Cow position:chr4:62472289-62472010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:217-494
               
               
               Cow position:chr4:34631113-34630821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:218-469
               
               
               Cow position:chr4:68590981-68590735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:219-427
               
               
               Cow position:chr4:22215302-22215509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:219-442
               
               
               Cow position:chr4:45582916-45583133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:219-494
               
               
               Cow position:chr4:20327517-20327783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:220-442
               
               
               Cow position:chr4:29384035-29384246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:221-494
               
               
               Cow position:chr4:66256885-66256615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:222-397
               
               
               Cow position:chr4:56756063-56755886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:222-399
               
               
               Cow position:chr4:4516662-4516841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:222-417
               
               
               Cow position:chr4:48227488-48227676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:222-430
               
               
               Cow position:chr4:348221-348427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:222-439
               
               
               Cow position:chr4:14512347-14512569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:222-442
               
               
               Cow position:chr4:60527386-60527166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):197, 61

               
               
               Conread position:222-454
               
               
               Cow position:chr4:85897-85665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:222-493
               
               
               Cow position:chr4:12474056-12473777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:222-493
               
               
               Cow position:chr4:13284589-13284311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:222-494
               
               
               Cow position:chr4:15439791-15439507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:222-494
               
               
               Cow position:chr4:46566265-46566546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:223-370
               
               
               Cow position:chr4:19328785-19328643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:223-373
               
               
               Cow position:chr4:12666233-12666086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 6

               
               
               Conread position:223-390
               
               
               Cow position:chr4:10785935-10786101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:223-396
               
               
               Cow position:chr4:19330567-19330736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):6, 57

               
               
               Conread position:223-397
               
               
               Cow position:chr4:12720336-12720159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:223-399
               
               
               Cow position:chr4:36058252-36058071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:223-399
               
               
               Cow position:chr4:39569402-39569233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:223-410
               
               
               Cow position:chr4:38946423-38946235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 180

               
               
               Conread position:223-411
               
               
               Cow position:chr4:28660341-28660533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:223-417
               
               
               Cow position:chr4:50494983-50494783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:223-442
               
               
               Cow position:chr4:31505809-31506038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:223-442
               
               
               Cow position:chr4:35638704-35638917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):196, 15

               
               
               Conread position:223-442
               
               
               Cow position:chr4:60141322-60141531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:223-442
               
               
               Cow position:chr4:68806207-68805998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:223-473
               
               
               Cow position:chr4:37343324-37343080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):196, 90

               
               
               Conread position:223-494
               
               
               Cow position:chr4:11218958-11218687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:223-494
               
               
               Cow position:chr4:19584919-19584645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 195

               
               
               Conread position:223-494
               
               
               Cow position:chr4:54871819-54872099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:224-338
               
               
               Cow position:chr4:48333243-48333361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:224-417
               
               
               Cow position:chr4:26012334-26012140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:224-442
               
               
               Cow position:chr4:12442112-12441881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:224-450
               
               
               Cow position:chr4:69497315-69497093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):135, 6

               
               
               Conread position:224-496
               
               
               Cow position:chr4:4186320-4186047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:225-382
               
               
               Cow position:chr4:63198162-63198325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:225-396
               
               
               Cow position:chr4:42347691-42347517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:225-413
               
               
               Cow position:chr4:23646668-23646842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:225-414
               
               
               Cow position:chr4:16238966-16239153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:225-440
               
               
               Cow position:chr4:27521762-27521541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 142

               
               
               Conread position:225-442
               
               
               Cow position:chr4:29317866-29318090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:225-442
               
               
               Cow position:chr4:61608766-61608979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):194, 40

               
               
               Conread position:225-491
               
               
               Cow position:chr4:30778618-30778887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 137

               
               
               Conread position:225-493
               
               
               Cow position:chr4:19700309-19700035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 184

               
               
               Conread position:225-494
               
               
               Cow position:chr4:10968191-10968461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:226-382
               
               
               Cow position:chr4:29236732-29236895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:226-391
               
               
               Cow position:chr4:26830640-26830475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:226-397
               
               
               Cow position:chr4:61451418-61451245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:226-406
               
               
               Cow position:chr4:59015781-59015611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:226-422
               
               
               Cow position:chr4:30648050-30647860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:226-442
               
               
               Cow position:chr4:62370510-62370302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):193, 88

               
               
               Conread position:226-493
               
               
               Cow position:chr4:13608666-13608390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:226-494
               
               
               Cow position:chr4:19407790-19408072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:226-494
               
               
               Cow position:chr4:60719293-60719027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):193, 44

               
               
               Conread position:227-311
               
               
               Cow position:chr4:27578243-27578159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:74
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-332
               
               
               Cow position:chr4:32272721-32272824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-338
               
               
               Cow position:chr4:47029900-47029786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:227-341
               
               
               Cow position:chr4:6202204-6202316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-346
               
               
               Cow position:chr4:16798770-16798889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:227-351
               
               
               Cow position:chr4:45387020-45386899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:227-354
               
               
               Cow position:chr4:49338239-49338116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:227-363
               
               
               Cow position:chr4:47035521-47035659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:227-374
               
               
               Cow position:chr4:8388879-8389027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:227-374
               
               
               Cow position:chr4:34544505-34544361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:227-385
               
               
               Cow position:chr4:53941593-53941753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:227-391
               
               
               Cow position:chr4:2713658-2713822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:227-391
               
               
               Cow position:chr4:6072851-6073017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:227-395
               
               
               Cow position:chr4:45723449-45723279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:227-397
               
               
               Cow position:chr4:16636876-16637043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:227-397
               
               
               Cow position:chr4:27691470-27691641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 140

               
               
               Conread position:227-398
               
               
               Cow position:chr4:299349-299180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-398
               
               
               Cow position:chr4:7326731-7326895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:227-398
               
               
               Cow position:chr4:45840592-45840429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:227-398
               
               
               Cow position:chr4:60370325-60370498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:227-399
               
               
               Cow position:chr4:23271483-23271312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr4:30944154-30943984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr4:36070902-36070732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr4:59105485-59105653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr4:53050195-53050017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 141

               
               
               Conread position:227-406
               
               
               Cow position:chr4:13194155-13193987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:227-406
               
               
               Cow position:chr4:43909967-43909784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:227-406
               
               
               Cow position:chr4:47417613-47417435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:227-407
               
               
               Cow position:chr4:5132545-5132355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:227-407
               
               
               Cow position:chr4:20164497-20164671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:227-409
               
               
               Cow position:chr4:65291663-65291836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:227-410
               
               
               Cow position:chr4:22127799-22127989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr4:61998998-61999184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:227-414
               
               
               Cow position:chr4:12867300-12867119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-416
               
               
               Cow position:chr4:59055671-59055848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr4:25802894-25802702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:227-417
               
               
               Cow position:chr4:26644947-26644754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr4:27665217-27665025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr4:28841619-28841428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:227-417
               
               
               Cow position:chr4:42080504-42080690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:227-417
               
               
               Cow position:chr4:47230796-47230986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:227-417
               
               
               Cow position:chr4:47283811-47284001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:227-417
               
               
               Cow position:chr4:61391037-61391215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-421
               
               
               Cow position:chr4:19200306-19200120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:227-426
               
               
               Cow position:chr4:54785730-54785925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:227-431
               
               
               Cow position:chr4:11506589-11506786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:227-431
               
               
               Cow position:chr4:18952178-18951970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:227-441
               
               
               Cow position:chr4:19539032-19539250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:227-441
               
               
               Cow position:chr4:22101060-22101278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:227-441
               
               
               Cow position:chr4:38209775-38209988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:227-442
               
               
               Cow position:chr4:13241841-13241611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:227-442
               
               
               Cow position:chr4:13919179-13918967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 130

               
               
               Conread position:227-442
               
               
               Cow position:chr4:18098861-18099076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):103, 90

               
               
               Conread position:227-442
               
               
               Cow position:chr4:18756637-18756420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:227-442
               
               
               Cow position:chr4:28771870-28772081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):192, 27

               
               
               Conread position:227-442
               
               
               Cow position:chr4:32562033-32561815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr4:38349994-38350214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr4:41900166-41899957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:227-442
               
               
               Cow position:chr4:46560379-46560166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 79

               
               
               Conread position:227-442
               
               
               Cow position:chr4:49629686-49629465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 69

               
               
               Conread position:227-442
               
               
               Cow position:chr4:54390814-54391032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:227-442
               
               
               Cow position:chr4:58018541-58018330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:227-469
               
               
               Cow position:chr4:19431490-19431740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:227-469
               
               
               Cow position:chr4:21088668-21088912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 120

               
               
               Conread position:227-469
               
               
               Cow position:chr4:58173115-58172849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-488
               
               
               Cow position:chr4:19542350-19542078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 198

               
               
               Conread position:227-489
               
               
               Cow position:chr4:4084257-4084517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):192, 77

               
               
               Conread position:227-492
               
               
               Cow position:chr4:13344736-13344466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr4:275644-275391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:227-494
               
               
               Cow position:chr4:1015271-1014996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 98

               
               
               Conread position:227-494
               
               
               Cow position:chr4:3688129-3687851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 92

               
               
               Conread position:227-494
               
               
               Cow position:chr4:4320794-4321072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):173, 17

               
               
               Conread position:227-494
               
               
               Cow position:chr4:11871713-11871982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:227-494
               
               
               Cow position:chr4:19745070-19744813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:227-494
               
               
               Cow position:chr4:29291706-29291447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):217, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr4:34641523-34641801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:227-494
               
               
               Cow position:chr4:51899221-51898935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 256

               
               
               Conread position:227-494
               
               
               Cow position:chr4:54191302-54191016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 61

               
               
               Conread position:227-494
               
               
               Cow position:chr4:54927230-54927514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 250

               
               
               Conread position:227-494
               
               
               Cow position:chr4:56239664-56239927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr4:65548832-65549105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:227-494
               
               
               Cow position:chr4:66172596-66172872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):146, 16

               
               
               Conread position:227-495
               
               
               Cow position:chr4:47038969-47038694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):192, 235

               
               
               Conread position:228-389
               
               
               Cow position:chr4:51867398-51867242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):152, 63

               
               
               Conread position:228-407
               
               
               Cow position:chr4:44681063-44681230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:228-411
               
               
               Cow position:chr4:25973884-25974059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):159, 30

               
               
               Conread position:228-417
               
               
               Cow position:chr4:47048312-47048129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr4:16221669-16221891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:228-494
               
               
               Cow position:chr4:44183920-44184183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:228-494
               
               
               Cow position:chr4:45626443-45626695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):191, 15

               
               
               Conread position:228-494
               
               
               Cow position:chr4:48152173-48152443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:228-494
               
               
               Cow position:chr4:56591241-56590969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 169

               
               
               Conread position:229-345
               
               
               Cow position:chr4:67467177-67467061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-404
               
               
               Cow position:chr4:19420557-19420732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:229-417
               
               
               Cow position:chr4:47262735-47262546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr4:58045434-58045623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 168

               
               
               Conread position:229-421
               
               
               Cow position:chr4:52823204-52823394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:229-426
               
               
               Cow position:chr4:58389037-58389240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:229-437
               
               
               Cow position:chr4:55694370-55694167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:229-442
               
               
               Cow position:chr4:40995932-40995717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:229-442
               
               
               Cow position:chr4:50368610-50368395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:229-472
               
               
               Cow position:chr4:15905304-15905055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 118

               
               
               Conread position:229-488
               
               
               Cow position:chr4:54789840-54789573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:229-494
               
               
               Cow position:chr4:10732414-10732151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):190, 23

               
               
               Conread position:229-494
               
               
               Cow position:chr4:19102678-19102957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:229-494
               
               
               Cow position:chr4:38999614-38999355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:229-494
               
               
               Cow position:chr4:40414428-40414702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:230-319
               
               
               Cow position:chr4:11961663-11961574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-335
               
               
               Cow position:chr4:47451675-47451568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr4:45629847-45629973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:230-364
               
               
               Cow position:chr4:34722568-34722432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:230-373
               
               
               Cow position:chr4:42672433-42672582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-377
               
               
               Cow position:chr4:29116574-29116727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-381
               
               
               Cow position:chr4:68358523-68358378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:230-382
               
               
               Cow position:chr4:60302818-60302960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-387
               
               
               Cow position:chr4:19504119-19503970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr4:20315298-20315473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-392
               
               
               Cow position:chr4:56853050-56852884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:230-393
               
               
               Cow position:chr4:27425900-27425747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:230-394
               
               
               Cow position:chr4:67645676-67645513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:230-398
               
               
               Cow position:chr4:23943446-23943614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:230-399
               
               
               Cow position:chr4:11099464-11099625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr4:12052140-12052306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr4:56805360-56805199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-410
               
               
               Cow position:chr4:51617799-51617980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:230-414
               
               
               Cow position:chr4:11154470-11154283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr4:39010250-39010064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:230-415
               
               
               Cow position:chr4:5964891-5964705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr4:7698462-7698278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr4:24356703-24356522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):141, 37

               
               
               Conread position:230-417
               
               
               Cow position:chr4:29107108-29106919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr4:32458659-32458848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:230-417
               
               
               Cow position:chr4:37985926-37985744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr4:41780037-41780227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:230-417
               
               
               Cow position:chr4:42044778-42044963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr4:45484001-45483810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:230-417
               
               
               Cow position:chr4:45773663-45773474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr4:53347784-53347958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):110, 60

               
               
               Conread position:230-417
               
               
               Cow position:chr4:56236357-56236540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:230-421
               
               
               Cow position:chr4:26671645-26671840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 151

               
               
               Conread position:230-422
               
               
               Cow position:chr4:56395713-56395518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-427
               
               
               Cow position:chr4:46761807-46761608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:230-429
               
               
               Cow position:chr4:656611-656809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:230-437
               
               
               Cow position:chr4:30769229-30769026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:230-440
               
               
               Cow position:chr4:19315810-19316017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 92

               
               
               Conread position:230-442
               
               
               Cow position:chr4:9925442-9925643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:230-442
               
               
               Cow position:chr4:10558733-10558522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr4:12591023-12591228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):189, 16

               
               
               Conread position:230-442
               
               
               Cow position:chr4:19333580-19333372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr4:27632638-27632433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr4:28836728-28836522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:230-442
               
               
               Cow position:chr4:44903481-44903280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):189, 62

               
               
               Conread position:230-442
               
               
               Cow position:chr4:45212989-45213204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:230-442
               
               
               Cow position:chr4:67393292-67393077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-443
               
               
               Cow position:chr4:53208481-53208278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:230-444
               
               
               Cow position:chr4:38358625-38358837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:230-454
               
               
               Cow position:chr4:3388738-3388523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:230-470
               
               
               Cow position:chr4:22138019-22138262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:230-476
               
               
               Cow position:chr4:46435531-46435268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-488
               
               
               Cow position:chr4:32693985-32693718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):181, 88

               
               
               Conread position:230-490
               
               
               Cow position:chr4:19292911-19292652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:230-490
               
               
               Cow position:chr4:27276348-27276613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:230-490
               
               
               Cow position:chr4:37732282-37732551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-490
               
               
               Cow position:chr4:45636369-45636098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:230-490
               
               
               Cow position:chr4:49794847-49794599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):191, 73

               
               
               Conread position:230-493
               
               
               Cow position:chr4:11969651-11969392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:230-494
               
               
               Cow position:chr4:7299-7562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr4:570985-570718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):189, 61

               
               
               Conread position:230-494
               
               
               Cow position:chr4:12034467-12034197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr4:12676992-12676733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):213, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr4:19265774-19265503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr4:20142714-20142980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:230-494
               
               
               Cow position:chr4:24371664-24371930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:230-494
               
               
               Cow position:chr4:31136952-31136679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:230-494
               
               
               Cow position:chr4:45685650-45685393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):186, 71

               
               
               Conread position:230-494
               
               
               Cow position:chr4:51728271-51728004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:230-494
               
               
               Cow position:chr4:51769302-51769039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:230-494
               
               
               Cow position:chr4:59785520-59785246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:230-494
               
               
               Cow position:chr4:62983361-62983626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 63

               
               
               Conread position:230-495
               
               
               Cow position:chr4:19199086-19199364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:231-315
               
               
               Cow position:chr4:15462031-15462115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:74
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-380
               
               
               Cow position:chr4:49880509-49880646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:231-385
               
               
               Cow position:chr4:10958462-10958617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:231-398
               
               
               Cow position:chr4:46656330-46656160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:231-399
               
               
               Cow position:chr4:66354758-66354927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:231-404
               
               
               Cow position:chr4:38940746-38940918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 94

               
               
               Conread position:231-405
               
               
               Cow position:chr4:25929405-25929240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:231-411
               
               
               Cow position:chr4:19543138-19542954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:231-411
               
               
               Cow position:chr4:56410541-56410363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-413
               
               
               Cow position:chr4:23656167-23655989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:231-417
               
               
               Cow position:chr4:3519615-3519433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr4:35974563-35974374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:231-425
               
               
               Cow position:chr4:28854080-28854268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:231-426
               
               
               Cow position:chr4:9269702-9269885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):188, 117

               
               
               Conread position:231-431
               
               
               Cow position:chr4:26830914-26830704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 154

               
               
               Conread position:231-431
               
               
               Cow position:chr4:32789820-32790006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):188, 38

               
               
               Conread position:231-438
               
               
               Cow position:chr4:17790100-17790302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):186, 45

               
               
               Conread position:231-438
               
               
               Cow position:chr4:42231837-42232033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):188, 48

               
               
               Conread position:231-440
               
               
               Cow position:chr4:34983307-34983508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:231-441
               
               
               Cow position:chr4:13995581-13995374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:231-442
               
               
               Cow position:chr4:1645887-1646106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:231-442
               
               
               Cow position:chr4:19496696-19496480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr4:19597136-19597338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):184, 76

               
               
               Conread position:231-468
               
               
               Cow position:chr4:48322233-48321994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:231-490
               
               
               Cow position:chr4:45725060-45724807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:231-493
               
               
               Cow position:chr4:18974622-18974353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:231-493
               
               
               Cow position:chr4:66380140-66380414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr4:13221984-13222255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 192

               
               
               Conread position:231-494
               
               
               Cow position:chr4:16881176-16881435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr4:21874374-21874100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:231-494
               
               
               Cow position:chr4:25356134-25356379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):188, 54

               
               
               Conread position:231-494
               
               
               Cow position:chr4:31004216-31004479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):184, 68

               
               
               Conread position:231-494
               
               
               Cow position:chr4:38935554-38935284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr4:38944062-38944330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr4:45706233-45705973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:231-494
               
               
               Cow position:chr4:46061144-46060872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:231-494
               
               
               Cow position:chr4:53126293-53126044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr4:69169845-69169582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:231-496
               
               
               Cow position:chr4:20147381-20147111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:232-377
               
               
               Cow position:chr4:63596567-63596416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-390
               
               
               Cow position:chr4:59755456-59755605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-396
               
               
               Cow position:chr4:34722689-34722855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:232-397
               
               
               Cow position:chr4:20115816-20115984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr4:50131717-50131548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:232-399
               
               
               Cow position:chr4:66412378-66412216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-406
               
               
               Cow position:chr4:15236818-15236655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr4:40393006-40392837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr4:51630994-51630804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 167

               
               
               Conread position:232-411
               
               
               Cow position:chr4:26012607-26012419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 153

               
               
               Conread position:232-417
               
               
               Cow position:chr4:30691197-30691016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:232-422
               
               
               Cow position:chr4:53380883-53380695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:232-424
               
               
               Cow position:chr4:8083613-8083792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-431
               
               
               Cow position:chr4:561826-561629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):91, 82

               
               
               Conread position:232-432
               
               
               Cow position:chr4:19119214-19119013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):81, 90

               
               
               Conread position:232-440
               
               
               Cow position:chr4:14020694-14020488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:232-441
               
               
               Cow position:chr4:46404716-46404917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):182, 35

               
               
               Conread position:232-442
               
               
               Cow position:chr4:12048073-12047858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):125, 38

               
               
               Conread position:232-442
               
               
               Cow position:chr4:21161300-21161091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:232-468
               
               
               Cow position:chr4:34699849-34700071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):148, 82

               
               
               Conread position:232-480
               
               
               Cow position:chr4:22009867-22010115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):187, 53

               
               
               Conread position:232-490
               
               
               Cow position:chr4:16762524-16762797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:232-492
               
               
               Cow position:chr4:21391624-21391883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:232-492
               
               
               Cow position:chr4:33096775-33097046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:232-492
               
               
               Cow position:chr4:59001943-59002204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 163

               
               
               Conread position:232-493
               
               
               Cow position:chr4:3341150-3340880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:232-493
               
               
               Cow position:chr4:68234158-68233895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:232-494
               
               
               Cow position:chr4:13326751-13327025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:232-494
               
               
               Cow position:chr4:16814586-16814320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 222

               
               
               Conread position:232-494
               
               
               Cow position:chr4:19435442-19435187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):184, 13

               
               
               Conread position:232-494
               
               
               Cow position:chr4:28839805-28839554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:232-494
               
               
               Cow position:chr4:33970710-33970976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):187, 15

               
               
               Conread position:232-494
               
               
               Cow position:chr4:34510024-34509766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr4:45589400-45589673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr4:61897357-61897607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):187, 37

               
               
               Conread position:232-494
               
               
               Cow position:chr4:66547568-66547841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):90, 230

               
               
               Conread position:232-494
               
               
               Cow position:chr4:69290546-69290811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:232-496
               
               
               Cow position:chr4:59277279-59277554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 166

               
               
               Conread position:233-351
               
               
               Cow position:chr4:25769247-25769360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-374
               
               
               Cow position:chr4:38811610-38811459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:233-397
               
               
               Cow position:chr4:44927349-44927508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr4:2628724-2628558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr4:21553895-21554063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:233-408
               
               
               Cow position:chr4:34919080-34919249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr4:479608-479780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr4:29843013-29842838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):161, 74

               
               
               Conread position:233-426
               
               
               Cow position:chr4:62794162-62794361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:233-427
               
               
               Cow position:chr4:65825630-65825819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:233-432
               
               
               Cow position:chr4:32602020-32601833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):186, 79

               
               
               Conread position:233-442
               
               
               Cow position:chr4:4295772-4295572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:233-442
               
               
               Cow position:chr4:27530306-27530104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):186, 35

               
               
               Conread position:233-442
               
               
               Cow position:chr4:34209130-34208923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:233-442
               
               
               Cow position:chr4:34383144-34383355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 114

               
               
               Conread position:233-442
               
               
               Cow position:chr4:43916487-43916274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:233-442
               
               
               Cow position:chr4:45874270-45874480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:233-442
               
               
               Cow position:chr4:58248599-58248391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):20, 170

               
               
               Conread position:233-490
               
               
               Cow position:chr4:10999516-10999775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:233-493
               
               
               Cow position:chr4:12004408-12004154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:233-494
               
               
               Cow position:chr4:22546649-22546910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):186, 89

               
               
               Conread position:233-494
               
               
               Cow position:chr4:30974528-30974268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):178, 86

               
               
               Conread position:233-494
               
               
               Cow position:chr4:31023643-31023377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 152

               
               
               Conread position:233-494
               
               
               Cow position:chr4:36290816-36290556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:233-494
               
               
               Cow position:chr4:59871674-59871409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:233-496
               
               
               Cow position:chr4:1026043-1026309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:233-496
               
               
               Cow position:chr4:54455152-54455417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:234-354
               
               
               Cow position:chr4:9571299-9571179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 111

               
               
               Conread position:234-363
               
               
               Cow position:chr4:43436459-43436328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-373
               
               
               Cow position:chr4:5276265-5276402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:234-387
               
               
               Cow position:chr4:19496786-19496944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 90

               
               
               Conread position:234-397
               
               
               Cow position:chr4:3299605-3299759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:234-397
               
               
               Cow position:chr4:48239155-48239320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:234-398
               
               
               Cow position:chr4:51026544-51026380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:234-399
               
               
               Cow position:chr4:45801711-45801545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr4:56702008-56702176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:234-407
               
               
               Cow position:chr4:21112380-21112550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-410
               
               
               Cow position:chr4:46883474-46883652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:234-411
               
               
               Cow position:chr4:44613198-44613023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:234-414
               
               
               Cow position:chr4:60955514-60955342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:234-416
               
               
               Cow position:chr4:12245404-12245225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):127, 123

               
               
               Conread position:234-417
               
               
               Cow position:chr4:4647593-4647411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:234-417
               
               
               Cow position:chr4:13131674-13131486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:234-417
               
               
               Cow position:chr4:13668425-13668610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr4:45964083-45963895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:234-417
               
               
               Cow position:chr4:61969537-61969714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:234-417
               
               
               Cow position:chr4:66358449-66358634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:234-427
               
               
               Cow position:chr4:2732025-2731829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-432
               
               
               Cow position:chr4:59557632-59557439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:234-437
               
               
               Cow position:chr4:7704122-7704334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:234-441
               
               
               Cow position:chr4:29247007-29247214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:234-442
               
               
               Cow position:chr4:6093871-6094080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 134

               
               
               Conread position:234-442
               
               
               Cow position:chr4:44772845-44773057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:234-444
               
               
               Cow position:chr4:45588238-45588453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:234-477
               
               
               Cow position:chr4:26659493-26659242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:234-492
               
               
               Cow position:chr4:13693481-13693744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:234-492
               
               
               Cow position:chr4:22071479-22071724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:234-492
               
               
               Cow position:chr4:61232274-61232013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:234-493
               
               
               Cow position:chr4:2774916-2774646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 129

               
               
               Conread position:234-493
               
               
               Cow position:chr4:20026912-20027177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 86

               
               
               Conread position:234-493
               
               
               Cow position:chr4:34022393-34022658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:234-494
               
               
               Cow position:chr4:21065218-21064963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):182, 70

               
               
               Conread position:234-494
               
               
               Cow position:chr4:23190477-23190741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:234-494
               
               
               Cow position:chr4:23600361-23600105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:234-494
               
               
               Cow position:chr4:52748269-52748530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):185, 43

               
               
               Conread position:234-494
               
               
               Cow position:chr4:68076347-68076601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:235-315
               
               
               Cow position:chr4:64336086-64336166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:72
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-382
               
               
               Cow position:chr4:7816493-7816339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:235-385
               
               
               Cow position:chr4:14131616-14131471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:235-386
               
               
               Cow position:chr4:30935167-30935321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-388
               
               
               Cow position:chr4:46176103-46176258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-388
               
               
               Cow position:chr4:54315030-54315185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-391
               
               
               Cow position:chr4:59074546-59074704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr4:7043625-7043783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:235-392
               
               
               Cow position:chr4:42608931-42608776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr4:11186159-11185995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr4:12748229-12748381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr4:17076085-17076247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:235-401
               
               
               Cow position:chr4:2770263-2770101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:235-404
               
               
               Cow position:chr4:21128314-21128160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:235-407
               
               
               Cow position:chr4:69458388-69458222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr4:35578741-35578922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr4:36876664-36876843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:235-414
               
               
               Cow position:chr4:46669175-46668991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:235-417
               
               
               Cow position:chr4:5250383-5250199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr4:31178014-31177836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-417
               
               
               Cow position:chr4:49158600-49158782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 75

               
               
               Conread position:235-417
               
               
               Cow position:chr4:63261665-63261482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:235-424
               
               
               Cow position:chr4:23450898-23451088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:235-437
               
               
               Cow position:chr4:63078418-63078213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:235-440
               
               
               Cow position:chr4:47305273-47305065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-441
               
               
               Cow position:chr4:48381582-48381368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 175

               
               
               Conread position:235-442
               
               
               Cow position:chr4:20124776-20124982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:235-442
               
               
               Cow position:chr4:23757964-23757748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-442
               
               
               Cow position:chr4:68491204-68490993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:235-443
               
               
               Cow position:chr4:65173294-65173087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:235-444
               
               
               Cow position:chr4:1985843-1985631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:235-444
               
               
               Cow position:chr4:45837438-45837644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:235-444
               
               
               Cow position:chr4:47748606-47748399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-445
               
               
               Cow position:chr4:2681521-2681316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:235-464
               
               
               Cow position:chr4:47125646-47125880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:235-467
               
               
               Cow position:chr4:7964455-7964685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):109, 83

               
               
               Conread position:235-469
               
               
               Cow position:chr4:50194885-50194649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:235-477
               
               
               Cow position:chr4:5790838-5790596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:235-487
               
               
               Cow position:chr4:4084916-4085184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):38, 253

               
               
               Conread position:235-490
               
               
               Cow position:chr4:45076887-45077146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:235-492
               
               
               Cow position:chr4:51851404-51851134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:235-494
               
               
               Cow position:chr4:19573481-19573214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:235-494
               
               
               Cow position:chr4:19578575-19578325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):148, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr4:22073125-22073387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:235-494
               
               
               Cow position:chr4:26333008-26333273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:235-494
               
               
               Cow position:chr4:26335175-26335440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:235-494
               
               
               Cow position:chr4:37675819-37675543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr4:59873618-59873359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-494
               
               
               Cow position:chr4:68569452-68569724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:236-397
               
               
               Cow position:chr4:50837894-50837733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 125

               
               
               Conread position:236-492
               
               
               Cow position:chr4:21531449-21531716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):77, 167

               
               
               Conread position:236-494
               
               
               Cow position:chr4:38156902-38157163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):178, 66

               
               
               Conread position:237-494
               
               
               Cow position:chr4:42423618-42423879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 14

               
               
               Conread position:238-370
               
               
               Cow position:chr4:1184946-1184815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:238-383
               
               
               Cow position:chr4:44024350-44024497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):74, 121

               
               
               Conread position:238-399
               
               
               Cow position:chr4:43579227-43579383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:238-399
               
               
               Cow position:chr4:46494490-46494333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:238-409
               
               
               Cow position:chr4:22331309-22331144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:238-490
               
               
               Cow position:chr4:3421813-3421552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr4:508723-508980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):181, 35

               
               
               Conread position:238-494
               
               
               Cow position:chr4:29805180-29805440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 173

               
               
               Conread position:238-494
               
               
               Cow position:chr4:46527193-46526925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:238-494
               
               
               Cow position:chr4:52831826-52832091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:239-392
               
               
               Cow position:chr4:63293646-63293496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-396
               
               
               Cow position:chr4:48138133-48137976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:239-431
               
               
               Cow position:chr4:44854099-44854294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:239-492
               
               
               Cow position:chr4:48486184-48485922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 254

               
               
               Conread position:240-351
               
               
               Cow position:chr4:22701625-22701732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:240-385
               
               
               Cow position:chr4:19463735-19463588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:240-394
               
               
               Cow position:chr4:12908556-12908408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-396
               
               
               Cow position:chr4:48693782-48693631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr4:501483-501653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr4:20153367-20153519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr4:22482507-22482355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:240-399
               
               
               Cow position:chr4:23925188-23925355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr4:26330527-26330699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-400
               
               
               Cow position:chr4:30250096-30250242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-406
               
               
               Cow position:chr4:66122182-66122344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:240-407
               
               
               Cow position:chr4:19709130-19708961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr4:41099121-41098953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:240-414
               
               
               Cow position:chr4:13372188-13372013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:240-414
               
               
               Cow position:chr4:21275426-21275586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr4:23059665-23059844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr4:35291210-35291032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:240-417
               
               
               Cow position:chr4:37691124-37691300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:240-417
               
               
               Cow position:chr4:50687678-50687849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:240-420
               
               
               Cow position:chr4:33389049-33388865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:240-426
               
               
               Cow position:chr4:42373968-42374154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:240-426
               
               
               Cow position:chr4:51083153-51083336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:240-429
               
               
               Cow position:chr4:45852763-45852944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:240-429
               
               
               Cow position:chr4:61887828-61887635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:240-429
               
               
               Cow position:chr4:69305822-69305626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:240-430
               
               
               Cow position:chr4:33360280-33360104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-430
               
               
               Cow position:chr4:66168151-66168338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):165, 63

               
               
               Conread position:240-441
               
               
               Cow position:chr4:19238405-19238206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:240-442
               
               
               Cow position:chr4:9444495-9444701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 124

               
               
               Conread position:240-442
               
               
               Cow position:chr4:12127452-12127653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 84

               
               
               Conread position:240-442
               
               
               Cow position:chr4:27699227-27699018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:240-442
               
               
               Cow position:chr4:49800878-49800680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:240-442
               
               
               Cow position:chr4:56746181-56745977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:240-442
               
               
               Cow position:chr4:60363538-60363336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:240-443
               
               
               Cow position:chr4:43542295-43542486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-444
               
               
               Cow position:chr4:617190-617394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:240-450
               
               
               Cow position:chr4:41907395-41907604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):171, 77

               
               
               Conread position:240-452
               
               
               Cow position:chr4:25543-25747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 77

               
               
               Conread position:240-463
               
               
               Cow position:chr4:39007684-39007474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-467
               
               
               Cow position:chr4:53134784-53134559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:240-478
               
               
               Cow position:chr4:4318967-4319206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):64, 70

               
               
               Conread position:240-478
               
               
               Cow position:chr4:45250160-45249917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:240-487
               
               
               Cow position:chr4:17851074-17851318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):179, 7

               
               
               Conread position:240-487
               
               
               Cow position:chr4:28701532-28701289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-490
               
               
               Cow position:chr4:23444851-23445117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:240-492
               
               
               Cow position:chr4:14153303-14153022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:240-493
               
               
               Cow position:chr4:3283267-3283519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:240-493
               
               
               Cow position:chr4:68889392-68889634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:240-494
               
               
               Cow position:chr4:17186161-17186423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:240-494
               
               
               Cow position:chr4:23846867-23847120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr4:25354715-25354462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 211

               
               
               Conread position:240-494
               
               
               Cow position:chr4:35982185-35981921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):156, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr4:37915151-37915410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr4:41867635-41867368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 124

               
               
               Conread position:240-494
               
               
               Cow position:chr4:47731051-47730783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):79, 118

               
               
               Conread position:240-494
               
               
               Cow position:chr4:48409098-48409342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:240-494
               
               
               Cow position:chr4:62317634-62317371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr4:65463326-65463569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):203, 75

               
               
               Conread position:240-495
               
               
               Cow position:chr4:48104378-48104638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:240-496
               
               
               Cow position:chr4:37991776-37991523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 83

               
               
               Conread position:241-399
               
               
               Cow position:chr4:56307988-56307832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:241-406
               
               
               Cow position:chr4:61524616-61524455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:241-408
               
               
               Cow position:chr4:17051098-17051265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:241-417
               
               
               Cow position:chr4:5046948-5047134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:241-424
               
               
               Cow position:chr4:23984932-23985118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 179

               
               
               Conread position:241-431
               
               
               Cow position:chr4:33838617-33838803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):178, 65

               
               
               Conread position:241-438
               
               
               Cow position:chr4:46234976-46235166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:241-440
               
               
               Cow position:chr4:26959780-26959982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:241-442
               
               
               Cow position:chr4:5728017-5727830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):144, 63

               
               
               Conread position:241-442
               
               
               Cow position:chr4:23509777-23509582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):178, 29

               
               
               Conread position:241-467
               
               
               Cow position:chr4:3853665-3853430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:241-492
               
               
               Cow position:chr4:1419410-1419152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 56

               
               
               Conread position:241-494
               
               
               Cow position:chr4:13590273-13590016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:241-494
               
               
               Cow position:chr4:25197304-25197566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:241-494
               
               
               Cow position:chr4:36841447-36841212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):178, 13

               
               
               Conread position:241-496
               
               
               Cow position:chr4:214196-213939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):178, 29

               
               
               Conread position:242-390
               
               
               Cow position:chr4:62820871-62821017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr4:68391299-68391464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:242-413
               
               
               Cow position:chr4:13508054-13508225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):136, 76

               
               
               Conread position:242-442
               
               
               Cow position:chr4:21506779-21506970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:242-442
               
               
               Cow position:chr4:51986389-51986593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:242-492
               
               
               Cow position:chr4:24092946-24093210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:242-494
               
               
               Cow position:chr4:10915647-10915915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:242-494
               
               
               Cow position:chr4:24810266-24810513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:242-494
               
               
               Cow position:chr4:64191995-64192258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 137

               
               
               Conread position:242-494
               
               
               Cow position:chr4:65919803-65919541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 166

               
               
               Conread position:242-494
               
               
               Cow position:chr4:69455443-69455698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:243-492
               
               
               Cow position:chr4:17774181-17774423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):176, 43

               
               
               Conread position:244-399
               
               
               Cow position:chr4:68777123-68776965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-464
               
               
               Cow position:chr4:386211-386426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):175, 103

               
               
               Conread position:244-490
               
               
               Cow position:chr4:43740714-43740470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:245-407
               
               
               Cow position:chr4:36709207-36709042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:245-417
               
               
               Cow position:chr4:27511730-27511556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:245-426
               
               
               Cow position:chr4:19123052-19122874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):171, 25

               
               
               Conread position:245-442
               
               
               Cow position:chr4:63349293-63349499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-492
               
               
               Cow position:chr4:46258677-46258416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:245-494
               
               
               Cow position:chr4:33100625-33100888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:246-397
               
               
               Cow position:chr4:68764700-68764549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:246-424
               
               
               Cow position:chr4:16513346-16513519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 64

               
               
               Conread position:246-430
               
               
               Cow position:chr4:34653694-34653871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:247-389
               
               
               Cow position:chr4:972602-972742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:247-409
               
               
               Cow position:chr4:6089996-6090162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:247-442
               
               
               Cow position:chr4:2099812-2099614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:247-445
               
               
               Cow position:chr4:39847911-39847711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:247-494
               
               
               Cow position:chr4:8770274-8770034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):193, 70

               
               
               Conread position:247-494
               
               
               Cow position:chr4:45800060-45799802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:248-397
               
               
               Cow position:chr4:60621416-60621564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr4:26323923-26323726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr4:33181723-33181530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:248-494
               
               
               Cow position:chr4:45775151-45775411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:248-495
               
               
               Cow position:chr4:54478735-54478980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):52, 153

               
               
               Conread position:248-496
               
               
               Cow position:chr4:46550568-46550304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:249-469
               
               
               Cow position:chr4:60506454-60506233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:249-490
               
               
               Cow position:chr4:22713317-22713558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):148, 43

               
               
               Conread position:250-377
               
               
               Cow position:chr4:45665633-45665505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:250-413
               
               
               Cow position:chr4:61848740-61848904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:250-494
               
               
               Cow position:chr4:54171802-54171556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:251-407
               
               
               Cow position:chr4:39092060-39091908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:251-417
               
               
               Cow position:chr4:53819508-53819674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 110

               
               
               Conread position:252-406
               
               
               Cow position:chr4:39458834-39458675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:252-494
               
               
               Cow position:chr4:26901497-26901274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):167, 46

               
               
               Conread position:253-417
               
               
               Cow position:chr4:68807931-68808097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:253-492
               
               
               Cow position:chr4:48423042-48422805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):166, 39

               
               
               Conread position:255-442
               
               
               Cow position:chr4:16594248-16594070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:255-494
               
               
               Cow position:chr4:19097463-19097215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 148

               
               
               Conread position:256-442
               
               
               Cow position:chr4:14500072-14500258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:259-494
               
               
               Cow position:chr4:25537718-25537473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:260-442
               
               
               Cow position:chr4:3268203-3268377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:262-494
               
               
               Cow position:chr4:12901390-12901629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:263-413
               
               
               Cow position:chr4:19580584-19580740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:263-489
               
               
               Cow position:chr4:68387952-68387724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):172, 51

               
               
               Conread position:263-494
               
               
               Cow position:chr4:61188702-61188942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:264-494
               
               
               Cow position:chr4:37313334-37313097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:266-492
               
               
               Cow position:chr4:44449360-44449576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:266-494
               
               
               Cow position:chr4:34562542-34562307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:267-494
               
               
               Cow position:chr4:7571570-7571337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:268-399
               
               
               Cow position:chr4:12713868-12713997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:268-399
               
               
               Cow position:chr4:12716738-12716866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:268-494
               
               
               Cow position:chr4:63769994-63769775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):199, 140

               
               
               Conread position:270-431
               
               
               Cow position:chr4:6653881-6653722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:272-442
               
               
               Cow position:chr4:61268344-61268177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:273-442
               
               
               Cow position:chr4:45074213-45074049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr4:22050959-22051101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr4:46476785-46476931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:274-431
               
               
               Cow position:chr4:54650331-54650488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):140, 44

               
               
               Conread position:274-494
               
               
               Cow position:chr4:36893521-36893285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 219

               
               
               Conread position:275-494
               
               
               Cow position:chr4:63964839-63965061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):144, 42

               
               
               Conread position:280-397
               
               
               Cow position:chr4:17782800-17782917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:280-494
               
               
               Cow position:chr4:46455918-46456132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:285-439
               
               
               Cow position:chr4:60442900-60443051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:290-494
               
               
               Cow position:chr4:53100945-53100726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:296-485
               
               
               Cow position:chr4:59378042-59377846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:296-494
               
               
               Cow position:chr4:13941587-13941390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):147, 23

               
               
               Conread position:297-417
               
               
               Cow position:chr4:32272840-32272961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:297-493
               
               
               Cow position:chr4:48961358-48961558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:302-417
               
               
               Cow position:chr4:2000-1883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-430
               
               
               Cow position:chr4:65806022-65805893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-464
               
               
               Cow position:chr4:7808700-7808542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:302-490
               
               
               Cow position:chr4:44782501-44782305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:302-490
               
               
               Cow position:chr4:58880835-58881031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:302-494
               
               
               Cow position:chr4:9815222-9815420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:302-494
               
               
               Cow position:chr4:19321951-19322152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr4:21874929-21874738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:302-494
               
               
               Cow position:chr4:65650008-65650201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):141, 26

               
               
               Conread position:302-496
               
               
               Cow position:chr4:19098599-19098391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:303-406
               
               
               Cow position:chr4:14058797-14058695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:303-417
               
               
               Cow position:chr4:21532972-21533084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:303-442
               
               
               Cow position:chr4:51920672-51920530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:303-468
               
               
               Cow position:chr4:65265180-65265349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr4:17084213-17084413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:304-493
               
               
               Cow position:chr4:46591795-46591594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:304-494
               
               
               Cow position:chr4:49089911-49089716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 124

               
               
               Conread position:305-442
               
               
               Cow position:chr4:12135801-12135940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:305-489
               
               
               Cow position:chr4:54541515-54541708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:305-494
               
               
               Cow position:chr4:11380403-11380212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):138, 114

               
               
               Conread position:307-442
               
               
               Cow position:chr4:15462129-15462267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr4:11194307-11194111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:307-494
               
               
               Cow position:chr4:19324096-19323900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):112, 162

               
               
               Conread position:308-494
               
               
               Cow position:chr4:46025-45848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:308-496
               
               
               Cow position:chr4:63095953-63096148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 180

               
               
               Conread position:309-487
               
               
               Cow position:chr4:10851333-10851515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:310-494
               
               
               Cow position:chr4:45563865-45563670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr4:34503406-34503220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:323-494
               
               
               Cow position:chr4:24001861-24002039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:324-490
               
               
               Cow position:chr4:21017-20850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:324-490
               
               
               Cow position:chr4:56336770-56336610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 71

               
               
               Conread position:324-494
               
               
               Cow position:chr4:66136503-66136677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:328-494
               
               
               Cow position:chr4:38952654-38952480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:329-494
               
               
               Cow position:chr4:42921760-42921925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:329-494
               
               
               Cow position:chr4:54111841-54111677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:329-496
               
               
               Cow position:chr4:20504987-20505156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:330-494
               
               
               Cow position:chr4:65179048-65179212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:331-492
               
               
               Cow position:chr4:12049344-12049175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:332-488
               
               
               Cow position:chr4:42176377-42176538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:354-494
               
               
               Cow position:chr4:11332172-11332020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:358-494
               
               
               Cow position:chr4:19493626-19493480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:358-496
               
               
               Cow position:chr4:21232803-21232946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:197-442
               
               
               Cow position:chr5:40241998-40241765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):219, 44

               
               
               Conread position:208-409
               
               
               Cow position:chr5:49207076-49207274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):5, 33

               
               
               Conread position:208-446
               
               
               Cow position:chr5:43858165-43858405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:209-427
               
               
               Cow position:chr5:19972553-19972773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:214-442
               
               
               Cow position:chr5:52138191-52137954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:215-494
               
               
               Cow position:chr5:25035007-25035282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:218-494
               
               
               Cow position:chr5:65941005-65941291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:219-412
               
               
               Cow position:chr5:29895413-29895221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:219-467
               
               
               Cow position:chr5:18062064-18062323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 238

               
               
               Conread position:219-493
               
               
               Cow position:chr5:56071099-56070818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:220-386
               
               
               Cow position:chr5:71387442-71387283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:220-399
               
               
               Cow position:chr5:5030682-5030506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:220-417
               
               
               Cow position:chr5:53976291-53976092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:220-428
               
               
               Cow position:chr5:6876724-6876934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:220-442
               
               
               Cow position:chr5:12557045-12557270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:221-383
               
               
               Cow position:chr5:28660472-28660309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:221-494
               
               
               Cow position:chr5:21829108-21828827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:221-494
               
               
               Cow position:chr5:57934878-57935148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:222-392
               
               
               Cow position:chr5:47960023-47960191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:222-397
               
               
               Cow position:chr5:45436259-45436430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:222-417
               
               
               Cow position:chr5:24915285-24915482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:222-417
               
               
               Cow position:chr5:69427223-69427408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:222-441
               
               
               Cow position:chr5:64139803-64139580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:222-488
               
               
               Cow position:chr5:61914812-61914537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 227

               
               
               Conread position:222-494
               
               
               Cow position:chr5:32338720-32339005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:223-399
               
               
               Cow position:chr5:67340121-67339946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:223-414
               
               
               Cow position:chr5:46499802-46499608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:223-440
               
               
               Cow position:chr5:26167659-26167442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:223-442
               
               
               Cow position:chr5:46129427-46129650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:223-467
               
               
               Cow position:chr5:74039767-74040007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):191, 70

               
               
               Conread position:223-492
               
               
               Cow position:chr5:55232587-55232842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:223-493
               
               
               Cow position:chr5:3549567-3549825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):223, 20

               
               
               Conread position:223-494
               
               
               Cow position:chr5:46022818-46023097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:223-494
               
               
               Cow position:chr5:50858175-50857897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:223-494
               
               
               Cow position:chr5:61456084-61455806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:224-342
               
               
               Cow position:chr5:6669903-6670022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:224-351
               
               
               Cow position:chr5:13874000-13874130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:224-404
               
               
               Cow position:chr5:50713512-50713699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:224-436
               
               
               Cow position:chr5:6086103-6086318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:224-443
               
               
               Cow position:chr5:71788932-71788711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 39

               
               
               Conread position:224-494
               
               
               Cow position:chr5:13717322-13717606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:224-494
               
               
               Cow position:chr5:31052626-31052346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:225-378
               
               
               Cow position:chr5:44868592-44868441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:225-403
               
               
               Cow position:chr5:20127144-20126968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:225-407
               
               
               Cow position:chr5:24464975-24464802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:225-410
               
               
               Cow position:chr5:58401802-58401621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:225-426
               
               
               Cow position:chr5:62996196-62995992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:225-442
               
               
               Cow position:chr5:5257050-5257269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:225-483
               
               
               Cow position:chr5:28224679-28224426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):194, 87

               
               
               Conread position:225-493
               
               
               Cow position:chr5:6443906-6444189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):86, 176

               
               
               Conread position:225-493
               
               
               Cow position:chr5:42845356-42845635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:225-494
               
               
               Cow position:chr5:41009775-41010036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:225-494
               
               
               Cow position:chr5:43922934-43923197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):169, 65

               
               
               Conread position:226-385
               
               
               Cow position:chr5:34639360-34639199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:226-417
               
               
               Cow position:chr5:695090-694909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:226-424
               
               
               Cow position:chr5:20387391-20387177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-430
               
               
               Cow position:chr5:50578926-50579135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:226-442
               
               
               Cow position:chr5:33482948-33482740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:226-489
               
               
               Cow position:chr5:52211455-52211705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):133, 97

               
               
               Conread position:226-490
               
               
               Cow position:chr5:19752538-19752269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):6, 77

               
               
               Conread position:226-494
               
               
               Cow position:chr5:3582789-3582526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):193, 14

               
               
               Conread position:226-494
               
               
               Cow position:chr5:30805386-30805129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:226-494
               
               
               Cow position:chr5:35685169-35684897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:227-314
               
               
               Cow position:chr5:54067766-54067853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-351
               
               
               Cow position:chr5:21374881-21375003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr5:39242001-39242155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr5:25450179-25450027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-391
               
               
               Cow position:chr5:53824878-53825043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:227-397
               
               
               Cow position:chr5:25462317-25462153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-397
               
               
               Cow position:chr5:41530701-41530875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:227-397
               
               
               Cow position:chr5:43611934-43611763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:227-398
               
               
               Cow position:chr5:22957642-22957474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:227-399
               
               
               Cow position:chr5:8136694-8136534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr5:64843730-64843913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr5:75478683-75478857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:227-407
               
               
               Cow position:chr5:19294283-19294471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:227-410
               
               
               Cow position:chr5:37253657-37253481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr5:29829653-29829841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:227-414
               
               
               Cow position:chr5:29979728-29979910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:227-414
               
               
               Cow position:chr5:57497191-57497376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 91

               
               
               Conread position:227-417
               
               
               Cow position:chr5:17826421-17826230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr5:19972767-19972959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr5:30562166-30561969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:227-425
               
               
               Cow position:chr5:22102788-22102597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:227-427
               
               
               Cow position:chr5:55799282-55799081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:227-430
               
               
               Cow position:chr5:52668274-52668071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:227-440
               
               
               Cow position:chr5:33273932-33273716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):87, 177

               
               
               Conread position:227-440
               
               
               Cow position:chr5:57101291-57101501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:227-442
               
               
               Cow position:chr5:11562492-11562704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:227-442
               
               
               Cow position:chr5:34914819-34915034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:227-442
               
               
               Cow position:chr5:39937351-39937135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:227-442
               
               
               Cow position:chr5:45186880-45187098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:227-442
               
               
               Cow position:chr5:47743853-47743647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):192, 15

               
               
               Conread position:227-442
               
               
               Cow position:chr5:50824818-50824611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):192, 84

               
               
               Conread position:227-442
               
               
               Cow position:chr5:54312834-54312620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):192, 23

               
               
               Conread position:227-442
               
               
               Cow position:chr5:55068935-55068725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):192, 50

               
               
               Conread position:227-442
               
               
               Cow position:chr5:57062293-57062510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:227-442
               
               
               Cow position:chr5:66339307-66339098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:227-451
               
               
               Cow position:chr5:50723283-50723057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:227-466
               
               
               Cow position:chr5:35969775-35969530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 217

               
               
               Conread position:227-486
               
               
               Cow position:chr5:12322576-12322838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:227-488
               
               
               Cow position:chr5:26548908-26549175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:227-489
               
               
               Cow position:chr5:30233148-30232871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:227-492
               
               
               Cow position:chr5:15364105-15363843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):192, 77

               
               
               Conread position:227-493
               
               
               Cow position:chr5:26467862-26467585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):162, 36

               
               
               Conread position:227-493
               
               
               Cow position:chr5:57755799-57756069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):82, 70

               
               
               Conread position:227-494
               
               
               Cow position:chr5:12654674-12654939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr5:22738332-22738069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:227-494
               
               
               Cow position:chr5:29097597-29097328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):195, 74

               
               
               Conread position:227-494
               
               
               Cow position:chr5:33834277-33834005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:227-494
               
               
               Cow position:chr5:35826835-35826564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:227-494
               
               
               Cow position:chr5:42670638-42670902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:227-494
               
               
               Cow position:chr5:59081957-59082234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 248

               
               
               Conread position:227-494
               
               
               Cow position:chr5:59395899-59395618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:227-494
               
               
               Cow position:chr5:60016399-60016128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):98, 90

               
               
               Conread position:227-494
               
               
               Cow position:chr5:72903002-72903268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:227-496
               
               
               Cow position:chr5:35976728-35976476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-496
               
               
               Cow position:chr5:57372039-57371755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:228-399
               
               
               Cow position:chr5:63300312-63300141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-414
               
               
               Cow position:chr5:71015652-71015837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:228-416
               
               
               Cow position:chr5:62011918-62011729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:228-494
               
               
               Cow position:chr5:17999262-17999531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:228-495
               
               
               Cow position:chr5:65776141-65776422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:229-357
               
               
               Cow position:chr5:30487460-30487329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:229-389
               
               
               Cow position:chr5:64061246-64061092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:229-392
               
               
               Cow position:chr5:12504561-12504720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:229-399
               
               
               Cow position:chr5:51053415-51053586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:229-419
               
               
               Cow position:chr5:57687347-57687538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 118

               
               
               Conread position:229-431
               
               
               Cow position:chr5:75760035-75760244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 179

               
               
               Conread position:229-434
               
               
               Cow position:chr5:36823102-36822914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:229-442
               
               
               Cow position:chr5:7410179-7409971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):190, 94

               
               
               Conread position:229-492
               
               
               Cow position:chr5:30628925-30629196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:229-494
               
               
               Cow position:chr5:21617688-21617418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:229-494
               
               
               Cow position:chr5:55956143-55955868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):137, 89

               
               
               Conread position:229-494
               
               
               Cow position:chr5:56014955-56014690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):190, 73

               
               
               Conread position:229-494
               
               
               Cow position:chr5:57101564-57101821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:230-339
               
               
               Cow position:chr5:41757845-41757734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-342
               
               
               Cow position:chr5:21237661-21237771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:230-345
               
               
               Cow position:chr5:20736647-20736760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr5:43434770-43434897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-366
               
               
               Cow position:chr5:40740094-40740235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-376
               
               
               Cow position:chr5:14000871-14000731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr5:56624282-56624440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr5:57231862-57231711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:230-386
               
               
               Cow position:chr5:75711905-75712064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:230-389
               
               
               Cow position:chr5:59958403-59958247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:230-390
               
               
               Cow position:chr5:15770220-15770384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-390
               
               
               Cow position:chr5:55749804-55749965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 125

               
               
               Conread position:230-392
               
               
               Cow position:chr5:56477437-56477276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:230-396
               
               
               Cow position:chr5:14168078-14167908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):75, 157

               
               
               Conread position:230-397
               
               
               Cow position:chr5:46479015-46479177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr5:9559646-9559485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:230-398
               
               
               Cow position:chr5:32975995-32975822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:230-399
               
               
               Cow position:chr5:1678822-1678651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-399
               
               
               Cow position:chr5:4824385-4824211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr5:15364503-15364332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:230-399
               
               
               Cow position:chr5:26149267-26149097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:230-399
               
               
               Cow position:chr5:59662825-59662995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:230-404
               
               
               Cow position:chr5:38079606-38079428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:230-405
               
               
               Cow position:chr5:34533553-34533386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr5:5016655-5016481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:230-410
               
               
               Cow position:chr5:34918575-34918398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-411
               
               
               Cow position:chr5:19052559-19052741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr5:40152719-40152533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr5:40531300-40531490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:230-414
               
               
               Cow position:chr5:56434115-56433929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr5:57556261-57556077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:230-415
               
               
               Cow position:chr5:61201993-61201806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:230-416
               
               
               Cow position:chr5:55162861-55162672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:230-417
               
               
               Cow position:chr5:58698-58887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr5:7177384-7177196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr5:17834926-17835113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr5:23209191-23209002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr5:35459064-35459249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:230-417
               
               
               Cow position:chr5:36868969-36868782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:230-417
               
               
               Cow position:chr5:37255101-37255290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr5:43370961-43371150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:230-417
               
               
               Cow position:chr5:43839765-43839954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 119

               
               
               Conread position:230-417
               
               
               Cow position:chr5:48061876-48062072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 124

               
               
               Conread position:230-417
               
               
               Cow position:chr5:61049566-61049377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-424
               
               
               Cow position:chr5:2827607-2827414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:230-430
               
               
               Cow position:chr5:8736045-8736248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 161

               
               
               Conread position:230-430
               
               
               Cow position:chr5:39036014-39035811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:230-431
               
               
               Cow position:chr5:1693860-1694058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:230-431
               
               
               Cow position:chr5:49821663-49821458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-431
               
               
               Cow position:chr5:57303005-57302798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):79, 196

               
               
               Conread position:230-437
               
               
               Cow position:chr5:13270783-13270993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 135

               
               
               Conread position:230-440
               
               
               Cow position:chr5:46063725-46063518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:230-442
               
               
               Cow position:chr5:5760077-5760294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 134

               
               
               Conread position:230-442
               
               
               Cow position:chr5:50101146-50101357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):164, 90

               
               
               Conread position:230-442
               
               
               Cow position:chr5:55965661-55965875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:230-468
               
               
               Cow position:chr5:63241211-63240967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-469
               
               
               Cow position:chr5:52853199-52852965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:230-487
               
               
               Cow position:chr5:69333733-69333478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-488
               
               
               Cow position:chr5:26262453-26262709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:230-490
               
               
               Cow position:chr5:9893893-9894161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):189, 48

               
               
               Conread position:230-490
               
               
               Cow position:chr5:22795438-22795178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:230-490
               
               
               Cow position:chr5:58447060-58446771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:230-491
               
               
               Cow position:chr5:12673248-12673504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):205, 87

               
               
               Conread position:230-492
               
               
               Cow position:chr5:44028079-44028342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:230-492
               
               
               Cow position:chr5:64555763-64555492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 207

               
               
               Conread position:230-494
               
               
               Cow position:chr5:20128286-20128015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:230-494
               
               
               Cow position:chr5:29060705-29060960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:230-494
               
               
               Cow position:chr5:33032400-33032134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr5:34562241-34561973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):189, 58

               
               
               Conread position:230-494
               
               
               Cow position:chr5:34976608-34976882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr5:35208495-35208225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 225

               
               
               Conread position:230-494
               
               
               Cow position:chr5:35246875-35247151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):25, 265

               
               
               Conread position:230-494
               
               
               Cow position:chr5:36038773-36039045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 53

               
               
               Conread position:230-494
               
               
               Cow position:chr5:41885146-41884898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr5:43408108-43408398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):112, 260

               
               
               Conread position:230-494
               
               
               Cow position:chr5:44847795-44848059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr5:46681491-46681754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr5:52001392-52001660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr5:56071920-56072191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:230-494
               
               
               Cow position:chr5:57393071-57393340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 131

               
               
               Conread position:230-494
               
               
               Cow position:chr5:57526695-57526957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-494
               
               
               Cow position:chr5:59626740-59627013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:230-494
               
               
               Cow position:chr5:61726189-61725927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):205, 65

               
               
               Conread position:230-494
               
               
               Cow position:chr5:66257866-66257599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 93

               
               
               Conread position:230-494
               
               
               Cow position:chr5:66972662-66972389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:230-494
               
               
               Cow position:chr5:71845694-71845956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):193, 34

               
               
               Conread position:230-496
               
               
               Cow position:chr5:4280676-4280407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):190, 84

               
               
               Conread position:231-370
               
               
               Cow position:chr5:1122331-1122192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 123

               
               
               Conread position:231-370
               
               
               Cow position:chr5:43982548-43982408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:231-379
               
               
               Cow position:chr5:48104491-48104344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:231-385
               
               
               Cow position:chr5:31317232-31317077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:231-390
               
               
               Cow position:chr5:15077402-15077562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr5:31648646-31648484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:231-397
               
               
               Cow position:chr5:32731189-32731344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr5:55177111-55176952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr5:19968129-19968296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:231-399
               
               
               Cow position:chr5:20667549-20667710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr5:35235456-35235626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr5:6245434-6245606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-407
               
               
               Cow position:chr5:58519185-58519361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:231-411
               
               
               Cow position:chr5:60117659-60117479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:231-414
               
               
               Cow position:chr5:62341261-62341076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:231-417
               
               
               Cow position:chr5:29256477-29256662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:231-417
               
               
               Cow position:chr5:40122377-40122565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:231-427
               
               
               Cow position:chr5:3817456-3817653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:231-428
               
               
               Cow position:chr5:54404630-54404821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:231-430
               
               
               Cow position:chr5:11303335-11303144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:231-442
               
               
               Cow position:chr5:3743563-3743341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:231-442
               
               
               Cow position:chr5:65552491-65552692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):188, 12

               
               
               Conread position:231-442
               
               
               Cow position:chr5:69383482-69383274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 79

               
               
               Conread position:231-442
               
               
               Cow position:chr5:75227982-75228180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:231-488
               
               
               Cow position:chr5:3772073-3771815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:231-488
               
               
               Cow position:chr5:46512537-46512796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:231-490
               
               
               Cow position:chr5:11667953-11668219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:231-492
               
               
               Cow position:chr5:67932235-67932503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 244

               
               
               Conread position:231-494
               
               
               Cow position:chr5:7057166-7057439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):81, 135

               
               
               Conread position:231-494
               
               
               Cow position:chr5:45472505-45472241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:231-494
               
               
               Cow position:chr5:47757003-47756736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:231-494
               
               
               Cow position:chr5:72895917-72895646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 125

               
               
               Conread position:232-340
               
               
               Cow position:chr5:55414210-55414316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:232-380
               
               
               Cow position:chr5:3626950-3627095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:232-380
               
               
               Cow position:chr5:4728299-4728156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:232-380
               
               
               Cow position:chr5:57585106-57584958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-385
               
               
               Cow position:chr5:17537449-17537596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:232-388
               
               
               Cow position:chr5:55943488-55943642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-391
               
               
               Cow position:chr5:31234934-31234783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr5:34787801-34787639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:232-397
               
               
               Cow position:chr5:56643298-56643132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:232-407
               
               
               Cow position:chr5:70189308-70189128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:232-411
               
               
               Cow position:chr5:2309328-2309505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 109

               
               
               Conread position:232-411
               
               
               Cow position:chr5:22186636-22186469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:232-411
               
               
               Cow position:chr5:52029631-52029458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:232-417
               
               
               Cow position:chr5:28881452-28881647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 123

               
               
               Conread position:232-417
               
               
               Cow position:chr5:51800379-51800566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:232-427
               
               
               Cow position:chr5:7675928-7676121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-431
               
               
               Cow position:chr5:26147818-26147621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):188, 17

               
               
               Conread position:232-438
               
               
               Cow position:chr5:51289371-51289568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):187, 67

               
               
               Conread position:232-442
               
               
               Cow position:chr5:2240759-2240970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 189

               
               
               Conread position:232-442
               
               
               Cow position:chr5:4267890-4267689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):187, 61

               
               
               Conread position:232-442
               
               
               Cow position:chr5:6520236-6520030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):172, 80

               
               
               Conread position:232-442
               
               
               Cow position:chr5:30949685-30949896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:232-442
               
               
               Cow position:chr5:51246907-51247112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:232-442
               
               
               Cow position:chr5:64060676-64060465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 93

               
               
               Conread position:232-443
               
               
               Cow position:chr5:44796506-44796715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 60

               
               
               Conread position:232-486
               
               
               Cow position:chr5:42050774-42050519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):184, 48

               
               
               Conread position:232-494
               
               
               Cow position:chr5:17086788-17087061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:232-494
               
               
               Cow position:chr5:22242544-22242815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):146, 58

               
               
               Conread position:232-494
               
               
               Cow position:chr5:29828278-29828010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:232-494
               
               
               Cow position:chr5:45845460-45845733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr5:49341805-49342088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 255

               
               
               Conread position:232-494
               
               
               Cow position:chr5:62172628-62172375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):184, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr5:66366738-66366468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:232-496
               
               
               Cow position:chr5:44993809-44994083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 208

               
               
               Conread position:232-496
               
               
               Cow position:chr5:65136487-65136232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):213, 30

               
               
               Conread position:233-341
               
               
               Cow position:chr5:72160312-72160206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:233-382
               
               
               Cow position:chr5:14419788-14419930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:233-384
               
               
               Cow position:chr5:56563977-56563832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:233-385
               
               
               Cow position:chr5:45854730-45854574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):75, 132

               
               
               Conread position:233-392
               
               
               Cow position:chr5:19811749-19811592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:233-396
               
               
               Cow position:chr5:75116341-75116507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 133

               
               
               Conread position:233-398
               
               
               Cow position:chr5:3677957-3677784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-399
               
               
               Cow position:chr5:4981674-4981513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr5:20345767-20345593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 118

               
               
               Conread position:233-407
               
               
               Cow position:chr5:52849310-52849140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:233-409
               
               
               Cow position:chr5:60153996-60153828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr5:60207934-60207759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr5:2468984-2469159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:233-415
               
               
               Cow position:chr5:65140529-65140343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:233-417
               
               
               Cow position:chr5:60209917-60210098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:233-417
               
               
               Cow position:chr5:65760305-65760487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:233-442
               
               
               Cow position:chr5:14903837-14904050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:233-442
               
               
               Cow position:chr5:18574411-18574194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 122

               
               
               Conread position:233-442
               
               
               Cow position:chr5:44163144-44163350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:233-442
               
               
               Cow position:chr5:51298486-51298693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):186, 90

               
               
               Conread position:233-442
               
               
               Cow position:chr5:72045447-72045655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:233-461
               
               
               Cow position:chr5:70271096-70270868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):93, 85

               
               
               Conread position:233-490
               
               
               Cow position:chr5:51065744-51065496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):210, 75

               
               
               Conread position:233-490
               
               
               Cow position:chr5:73167785-73168036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):186, 85

               
               
               Conread position:233-492
               
               
               Cow position:chr5:65967503-65967771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:233-494
               
               
               Cow position:chr5:991703-991427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):133, 246

               
               
               Conread position:233-494
               
               
               Cow position:chr5:7044477-7044746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):183, 80

               
               
               Conread position:233-494
               
               
               Cow position:chr5:14550353-14550620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr5:18289347-18289091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):186, 78

               
               
               Conread position:233-494
               
               
               Cow position:chr5:19278474-19278739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:233-494
               
               
               Cow position:chr5:41935426-41935692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:233-494
               
               
               Cow position:chr5:47602037-47601780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 58

               
               
               Conread position:233-494
               
               
               Cow position:chr5:52164944-52165217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:233-494
               
               
               Cow position:chr5:57737341-57737065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr5:74643455-74643710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):186, 79

               
               
               Conread position:234-339
               
               
               Cow position:chr5:8149081-8149184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:234-349
               
               
               Cow position:chr5:13471337-13471221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:234-349
               
               
               Cow position:chr5:32672605-32672722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-386
               
               
               Cow position:chr5:61593491-61593343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:234-392
               
               
               Cow position:chr5:24108830-24108990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:234-397
               
               
               Cow position:chr5:51012228-51012064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:234-399
               
               
               Cow position:chr5:17987665-17987831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:234-406
               
               
               Cow position:chr5:21339032-21339213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr5:55783733-55783907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 129

               
               
               Conread position:234-410
               
               
               Cow position:chr5:12668764-12668932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:234-411
               
               
               Cow position:chr5:36634936-36634757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:234-414
               
               
               Cow position:chr5:63187648-63187829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 140

               
               
               Conread position:234-415
               
               
               Cow position:chr5:55041439-55041256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr5:6438798-6438976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr5:35394211-35394388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr5:46421826-46421631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr5:49920153-49919969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:234-417
               
               
               Cow position:chr5:54751039-54750852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:234-422
               
               
               Cow position:chr5:20994861-20995046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:234-423
               
               
               Cow position:chr5:60212815-60212625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:234-424
               
               
               Cow position:chr5:16185608-16185415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr5:11769500-11769290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 187

               
               
               Conread position:234-442
               
               
               Cow position:chr5:12300139-12299930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:234-442
               
               
               Cow position:chr5:19335549-19335762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:234-442
               
               
               Cow position:chr5:52136824-52137035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr5:56860671-56860466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:234-442
               
               
               Cow position:chr5:59627320-59627119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:234-443
               
               
               Cow position:chr5:26894485-26894704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:234-443
               
               
               Cow position:chr5:52108031-52108250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:234-443
               
               
               Cow position:chr5:53055331-53055543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-444
               
               
               Cow position:chr5:33560510-33560717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 86

               
               
               Conread position:234-475
               
               
               Cow position:chr5:46540832-46541071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):177, 80

               
               
               Conread position:234-492
               
               
               Cow position:chr5:29903315-29903555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):185, 58

               
               
               Conread position:234-494
               
               
               Cow position:chr5:11427008-11427274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr5:41165310-41165047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr5:50942932-50943186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr5:51554857-51555110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:234-494
               
               
               Cow position:chr5:52831706-52831427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:234-494
               
               
               Cow position:chr5:70951664-70951915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:235-347
               
               
               Cow position:chr5:17254001-17254109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:235-370
               
               
               Cow position:chr5:49508572-49508706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:235-376
               
               
               Cow position:chr5:74050051-74049910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-379
               
               
               Cow position:chr5:22898092-22898226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:235-388
               
               
               Cow position:chr5:58487600-58487449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:235-389
               
               
               Cow position:chr5:12566316-12566470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:235-390
               
               
               Cow position:chr5:54340993-54340838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:235-399
               
               
               Cow position:chr5:67634281-67634454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-406
               
               
               Cow position:chr5:31216826-31216996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:235-406
               
               
               Cow position:chr5:43846151-43846329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:235-410
               
               
               Cow position:chr5:67950558-67950734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 100

               
               
               Conread position:235-411
               
               
               Cow position:chr5:2355745-2355571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:235-414
               
               
               Cow position:chr5:30221550-30221730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 122

               
               
               Conread position:235-414
               
               
               Cow position:chr5:43465754-43465573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr5:57086835-57087015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):83, 127

               
               
               Conread position:235-417
               
               
               Cow position:chr5:19079470-19079297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr5:54127514-54127335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:235-417
               
               
               Cow position:chr5:56327499-56327676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:235-424
               
               
               Cow position:chr5:64140765-64140577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:235-427
               
               
               Cow position:chr5:12562533-12562726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):149, 79

               
               
               Conread position:235-430
               
               
               Cow position:chr5:5808324-5808130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:235-431
               
               
               Cow position:chr5:35190333-35190140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):184, 77

               
               
               Conread position:235-431
               
               
               Cow position:chr5:46710810-46710615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-431
               
               
               Cow position:chr5:46715710-46715515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-442
               
               
               Cow position:chr5:5856087-5855877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr5:16937807-16938003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):184, 79

               
               
               Conread position:235-442
               
               
               Cow position:chr5:43604366-43604160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:235-442
               
               
               Cow position:chr5:56613336-56613545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr5:60514798-60515009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:235-442
               
               
               Cow position:chr5:60948359-60948152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):184, 162

               
               
               Conread position:235-444
               
               
               Cow position:chr5:17828250-17828462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:235-444
               
               
               Cow position:chr5:25366326-25366116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):159, 28

               
               
               Conread position:235-461
               
               
               Cow position:chr5:39815273-39815499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:235-466
               
               
               Cow position:chr5:12902146-12901910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:235-467
               
               
               Cow position:chr5:56059837-56060074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 217

               
               
               Conread position:235-479
               
               
               Cow position:chr5:63627313-63627551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:235-489
               
               
               Cow position:chr5:30303108-30302859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):184, 83

               
               
               Conread position:235-490
               
               
               Cow position:chr5:32394829-32394565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 129

               
               
               Conread position:235-490
               
               
               Cow position:chr5:34625175-34624922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:235-493
               
               
               Cow position:chr5:70678418-70678678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-494
               
               
               Cow position:chr5:1247490-1247224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:235-494
               
               
               Cow position:chr5:31475910-31475645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:235-494
               
               
               Cow position:chr5:40237415-40237174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):184, 28

               
               
               Conread position:235-494
               
               
               Cow position:chr5:45405274-45405002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:236-392
               
               
               Cow position:chr5:41736408-41736252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:236-396
               
               
               Cow position:chr5:74065294-74065451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:236-494
               
               
               Cow position:chr5:5110833-5111114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:236-495
               
               
               Cow position:chr5:49474328-49474588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):183, 78

               
               
               Conread position:237-399
               
               
               Cow position:chr5:63763890-63763728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:237-420
               
               
               Cow position:chr5:48919023-48918851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:237-494
               
               
               Cow position:chr5:63234597-63234865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:238-397
               
               
               Cow position:chr5:66287165-66287010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:238-398
               
               
               Cow position:chr5:25598054-25597896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:238-417
               
               
               Cow position:chr5:7139617-7139788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:238-431
               
               
               Cow position:chr5:60523951-60523765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):181, 66

               
               
               Conread position:238-434
               
               
               Cow position:chr5:44734503-44734698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):181, 80

               
               
               Conread position:238-438
               
               
               Cow position:chr5:44722289-44722489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:238-451
               
               
               Cow position:chr5:9352725-9352520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 30

               
               
               Conread position:238-494
               
               
               Cow position:chr5:17062856-17063129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:239-492
               
               
               Cow position:chr5:66466536-66466281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:239-493
               
               
               Cow position:chr5:55756190-55756463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:240-351
               
               
               Cow position:chr5:74690030-74690143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr5:50703825-50703942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:240-379
               
               
               Cow position:chr5:18579111-18578975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 74

               
               
               Conread position:240-389
               
               
               Cow position:chr5:19626798-19626651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-391
               
               
               Cow position:chr5:9486861-9487014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-395
               
               
               Cow position:chr5:36370496-36370346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:240-397
               
               
               Cow position:chr5:718371-718215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:240-397
               
               
               Cow position:chr5:55949456-55949614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:240-397
               
               
               Cow position:chr5:57447442-57447601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:240-399
               
               
               Cow position:chr5:41984563-41984418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr5:68537442-68537605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:240-404
               
               
               Cow position:chr5:25447109-25446944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-406
               
               
               Cow position:chr5:19561224-19561392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-409
               
               
               Cow position:chr5:52192216-52192376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr5:60100684-60100523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr5:74887677-74887849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr5:44810015-44810191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:240-414
               
               
               Cow position:chr5:56525488-56525664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:240-417
               
               
               Cow position:chr5:57399029-57399207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:240-417
               
               
               Cow position:chr5:59335995-59335815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):73, 124

               
               
               Conread position:240-421
               
               
               Cow position:chr5:41226782-41226964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:240-424
               
               
               Cow position:chr5:61580502-61580319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:240-425
               
               
               Cow position:chr5:27084521-27084333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 123

               
               
               Conread position:240-426
               
               
               Cow position:chr5:38647878-38647675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:240-427
               
               
               Cow position:chr5:31527171-31527359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:240-427
               
               
               Cow position:chr5:71445614-71445424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:240-428
               
               
               Cow position:chr5:30492569-30492758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-431
               
               
               Cow position:chr5:34288032-34288220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:240-431
               
               
               Cow position:chr5:37842057-37842249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:240-434
               
               
               Cow position:chr5:17105067-17104880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:240-442
               
               
               Cow position:chr5:20843176-20843376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:240-442
               
               
               Cow position:chr5:39447303-39447516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr5:53935332-53935528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:240-442
               
               
               Cow position:chr5:66659736-66659528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:240-443
               
               
               Cow position:chr5:34347511-34347710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:240-443
               
               
               Cow position:chr5:64175908-64176108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 71

               
               
               Conread position:240-445
               
               
               Cow position:chr5:59384464-59384671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:240-449
               
               
               Cow position:chr5:11539830-11540038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 120

               
               
               Conread position:240-466
               
               
               Cow position:chr5:56222314-56222547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:240-469
               
               
               Cow position:chr5:30247303-30247528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:240-485
               
               
               Cow position:chr5:37941585-37941823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:240-488
               
               
               Cow position:chr5:7012627-7012881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:240-489
               
               
               Cow position:chr5:62812049-62811789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-490
               
               
               Cow position:chr5:54875471-54875735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:240-492
               
               
               Cow position:chr5:53835943-53835676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 140

               
               
               Conread position:240-492
               
               
               Cow position:chr5:69338036-69337786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:240-492
               
               
               Cow position:chr5:70591764-70591532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):210, 28

               
               
               Conread position:240-493
               
               
               Cow position:chr5:57074115-57074372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr5:11229449-11229708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:240-494
               
               
               Cow position:chr5:12760898-12761151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-494
               
               
               Cow position:chr5:14314738-14314486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-494
               
               
               Cow position:chr5:30253962-30253702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 60

               
               
               Conread position:240-494
               
               
               Cow position:chr5:30276909-30276658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:240-494
               
               
               Cow position:chr5:35228922-35229169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:240-494
               
               
               Cow position:chr5:35763466-35763236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):195, 23

               
               
               Conread position:240-494
               
               
               Cow position:chr5:38833336-38833082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):203, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr5:40109706-40109452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr5:43403131-43402861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):72, 106

               
               
               Conread position:240-494
               
               
               Cow position:chr5:44446653-44446907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:240-494
               
               
               Cow position:chr5:47316753-47317010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr5:49440630-49440913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr5:56028323-56028567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr5:56548788-56548541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:240-494
               
               
               Cow position:chr5:63192532-63192781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):180, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr5:63647255-63647513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 62

               
               
               Conread position:240-494
               
               
               Cow position:chr5:69099941-69099679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:240-496
               
               
               Cow position:chr5:14920704-14920973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:241-379
               
               
               Cow position:chr5:21520229-21520358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:241-393
               
               
               Cow position:chr5:69765813-69765965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:241-397
               
               
               Cow position:chr5:54712847-54713000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:241-406
               
               
               Cow position:chr5:53175028-53175202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:241-407
               
               
               Cow position:chr5:63939837-63940006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:241-408
               
               
               Cow position:chr5:38420829-38420655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 157

               
               
               Conread position:241-410
               
               
               Cow position:chr5:36143199-36143036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr5:5017592-5017425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:241-414
               
               
               Cow position:chr5:14454265-14454089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:241-417
               
               
               Cow position:chr5:56549589-56549411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:241-430
               
               
               Cow position:chr5:15991424-15991608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:241-442
               
               
               Cow position:chr5:12873973-12873770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:241-456
               
               
               Cow position:chr5:35145556-35145335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 138

               
               
               Conread position:241-492
               
               
               Cow position:chr5:22667291-22667040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:241-494
               
               
               Cow position:chr5:16893557-16893812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:241-494
               
               
               Cow position:chr5:20288037-20288303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-494
               
               
               Cow position:chr5:24996000-24996262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:241-494
               
               
               Cow position:chr5:25495130-25495388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:242-385
               
               
               Cow position:chr5:32975338-32975483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:242-387
               
               
               Cow position:chr5:64142434-64142580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:242-390
               
               
               Cow position:chr5:54554965-54555118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:242-406
               
               
               Cow position:chr5:21721255-21721414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr5:12434755-12434563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 63

               
               
               Conread position:242-489
               
               
               Cow position:chr5:73253625-73253381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:242-493
               
               
               Cow position:chr5:42064427-42064165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr5:61784505-61784767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:243-427
               
               
               Cow position:chr5:29599333-29599510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:243-468
               
               
               Cow position:chr5:20779180-20779400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:243-492
               
               
               Cow position:chr5:50600265-50600017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:243-494
               
               
               Cow position:chr5:55966654-55966918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:243-494
               
               
               Cow position:chr5:60598968-60599233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 219

               
               
               Conread position:243-494
               
               
               Cow position:chr5:66551673-66551938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 235

               
               
               Conread position:244-442
               
               
               Cow position:chr5:28302538-28302726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):175, 24

               
               
               Conread position:244-490
               
               
               Cow position:chr5:30845324-30845076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:244-494
               
               
               Cow position:chr5:47696242-47696483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):173, 63

               
               
               Conread position:245-398
               
               
               Cow position:chr5:52723792-52723637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:245-414
               
               
               Cow position:chr5:69682130-69682301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-490
               
               
               Cow position:chr5:53947116-53946861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:245-492
               
               
               Cow position:chr5:74581003-74580752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):174, 14

               
               
               Conread position:246-399
               
               
               Cow position:chr5:53779371-53779218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 100

               
               
               Conread position:246-417
               
               
               Cow position:chr5:51233808-51233974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:247-399
               
               
               Cow position:chr5:42753111-42752968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-411
               
               
               Cow position:chr5:6503661-6503830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr5:16668908-16668742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr5:62572746-62572577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:247-422
               
               
               Cow position:chr5:6695764-6695587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:247-440
               
               
               Cow position:chr5:48867255-48867443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 61

               
               
               Conread position:247-442
               
               
               Cow position:chr5:55942162-55942360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:247-492
               
               
               Cow position:chr5:17554820-17555071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:247-494
               
               
               Cow position:chr5:64523649-64523906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:247-494
               
               
               Cow position:chr5:66582185-66581926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:248-406
               
               
               Cow position:chr5:50087982-50087822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:248-406
               
               
               Cow position:chr5:56754146-56753989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:248-414
               
               
               Cow position:chr5:53980538-53980706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:248-416
               
               
               Cow position:chr5:65745554-65745719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr5:54753035-54753207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-442
               
               
               Cow position:chr5:49501604-49501805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr5:45397779-45397533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):175, 22

               
               
               Conread position:248-494
               
               
               Cow position:chr5:57994666-57994906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:248-494
               
               
               Cow position:chr5:68719081-68718830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:249-424
               
               
               Cow position:chr5:53795234-53795062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:249-494
               
               
               Cow position:chr5:12351599-12351829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:250-384
               
               
               Cow position:chr5:16637638-16637781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-390
               
               
               Cow position:chr5:37646287-37646153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:250-399
               
               
               Cow position:chr5:50525732-50525588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr5:20812761-20812591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:250-417
               
               
               Cow position:chr5:30035281-30035112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:250-424
               
               
               Cow position:chr5:38040356-38040527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 64

               
               
               Conread position:250-440
               
               
               Cow position:chr5:5847632-5847824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:250-490
               
               
               Cow position:chr5:60741457-60741209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:250-494
               
               
               Cow position:chr5:26097502-26097256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 74

               
               
               Conread position:250-494
               
               
               Cow position:chr5:72006285-72006532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:252-434
               
               
               Cow position:chr5:4864745-4864570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):167, 52

               
               
               Conread position:252-439
               
               
               Cow position:chr5:44053836-44054031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:252-494
               
               
               Cow position:chr5:15721878-15722105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):167, 18

               
               
               Conread position:253-417
               
               
               Cow position:chr5:16939383-16939549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:253-440
               
               
               Cow position:chr5:44196721-44196908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:253-496
               
               
               Cow position:chr5:17767944-17768185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:254-494
               
               
               Cow position:chr5:65753068-65752818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:255-442
               
               
               Cow position:chr5:45225613-45225794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):167, 65

               
               
               Conread position:255-494
               
               
               Cow position:chr5:41713495-41713258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:256-430
               
               
               Cow position:chr5:51125812-51125978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):163, 45

               
               
               Conread position:256-442
               
               
               Cow position:chr5:46704094-46704280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:256-442
               
               
               Cow position:chr5:57419590-57419775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):163, 58

               
               
               Conread position:258-432
               
               
               Cow position:chr5:41983928-41983753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 154

               
               
               Conread position:259-416
               
               
               Cow position:chr5:32935948-32935790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:259-494
               
               
               Cow position:chr5:64026812-64027047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:260-496
               
               
               Cow position:chr5:55795768-55796006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:261-442
               
               
               Cow position:chr5:12247540-12247718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):158, 56

               
               
               Conread position:261-490
               
               
               Cow position:chr5:57686540-57686776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):158, 59

               
               
               Conread position:262-442
               
               
               Cow position:chr5:17383954-17384130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:263-442
               
               
               Cow position:chr5:54350172-54350342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):156, 44

               
               
               Conread position:266-442
               
               
               Cow position:chr5:38169089-38168913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:266-496
               
               
               Cow position:chr5:69461531-69461289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 104

               
               
               Conread position:271-442
               
               
               Cow position:chr5:65679780-65679951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:272-494
               
               
               Cow position:chr5:17602015-17602240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 148

               
               
               Conread position:273-397
               
               
               Cow position:chr5:36722307-36722431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:274-387
               
               
               Cow position:chr5:29507401-29507514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-399
               
               
               Cow position:chr5:29010444-29010319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:275-442
               
               
               Cow position:chr5:17604949-17605115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:276-489
               
               
               Cow position:chr5:7193599-7193383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:281-417
               
               
               Cow position:chr5:60126877-60126735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:283-465
               
               
               Cow position:chr5:11289209-11289395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 80

               
               
               Conread position:283-494
               
               
               Cow position:chr5:60183979-60183762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:289-494
               
               
               Cow position:chr5:62378956-62378752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:291-494
               
               
               Cow position:chr5:37646377-37646585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:293-440
               
               
               Cow position:chr5:7723834-7723686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:293-494
               
               
               Cow position:chr5:67118587-67118379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:296-493
               
               
               Cow position:chr5:20422024-20422226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:301-480
               
               
               Cow position:chr5:61875698-61875517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):120, 140

               
               
               Conread position:302-442
               
               
               Cow position:chr5:51490087-51490226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:302-442
               
               
               Cow position:chr5:54060436-54060297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr5:55129503-55129362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-490
               
               
               Cow position:chr5:43992484-43992287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-492
               
               
               Cow position:chr5:4166800-4166607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:302-492
               
               
               Cow position:chr5:7698160-7697968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 71

               
               
               Conread position:302-494
               
               
               Cow position:chr5:23168666-23168868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr5:41294238-41294042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:302-494
               
               
               Cow position:chr5:43929578-43929777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):143, 16

               
               
               Conread position:302-494
               
               
               Cow position:chr5:44726177-44726365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:302-494
               
               
               Cow position:chr5:45419975-45420173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr5:56338861-56339059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-496
               
               
               Cow position:chr5:46509704-46509908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 186

               
               
               Conread position:303-494
               
               
               Cow position:chr5:67212519-67212317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:304-431
               
               
               Cow position:chr5:51490444-51490572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-491
               
               
               Cow position:chr5:24069544-24069362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:305-493
               
               
               Cow position:chr5:63987288-63987487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:305-494
               
               
               Cow position:chr5:54767752-54767948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr5:63059218-63059030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):146, 96

               
               
               Conread position:305-494
               
               
               Cow position:chr5:64591938-64592135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:306-469
               
               
               Cow position:chr5:9233832-9233995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:308-484
               
               
               Cow position:chr5:39258656-39258483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:309-494
               
               
               Cow position:chr5:69636377-69636196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 133

               
               
               Conread position:313-494
               
               
               Cow position:chr5:35982586-35982780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:315-496
               
               
               Cow position:chr5:63150021-63150209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:318-494
               
               
               Cow position:chr5:45126796-45126623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 128

               
               
               Conread position:319-441
               
               
               Cow position:chr5:37808520-37808643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr5:54375359-54375546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr5:6045434-6045252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr5:14629667-14629852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr5:56517242-56517063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 73

               
               
               Conread position:326-494
               
               
               Cow position:chr5:62142812-62142635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:328-496
               
               
               Cow position:chr5:7755437-7755603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:329-494
               
               
               Cow position:chr5:45804193-45804020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:329-494
               
               
               Cow position:chr5:50821916-50821743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr5:61102849-61102675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 152

               
               
               Conread position:335-496
               
               
               Cow position:chr5:48009732-48009888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:340-494
               
               
               Cow position:chr5:65588821-65588662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:166-410
               
               
               Cow position:chr6:19936256-19936504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:203-494
               
               
               Cow position:chr6:9736372-9736675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:205-381
               
               
               Cow position:chr6:19025535-19025363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:215-494
               
               
               Cow position:chr6:24468139-24468416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 99

               
               
               Conread position:215-494
               
               
               Cow position:chr6:67451112-67451398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:217-494
               
               
               Cow position:chr6:12965118-12964827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:220-442
               
               
               Cow position:chr6:12338245-12338026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):146, 86

               
               
               Conread position:220-490
               
               
               Cow position:chr6:44867291-44867561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 68

               
               
               Conread position:220-494
               
               
               Cow position:chr6:10399654-10399929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:220-494
               
               
               Cow position:chr6:22985607-22985883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):199, 86

               
               
               Conread position:221-437
               
               
               Cow position:chr6:41226591-41226792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:221-494
               
               
               Cow position:chr6:48010270-48010545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:222-382
               
               
               Cow position:chr6:66058457-66058614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:222-397
               
               
               Cow position:chr6:16627982-16627813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:222-397
               
               
               Cow position:chr6:63251668-63251844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 103

               
               
               Conread position:222-405
               
               
               Cow position:chr6:35743233-35743049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:222-417
               
               
               Cow position:chr6:23058467-23058270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:222-434
               
               
               Cow position:chr6:24514281-24514505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr6:21535293-21535070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:222-469
               
               
               Cow position:chr6:21467013-21467258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:222-469
               
               
               Cow position:chr6:50090897-50090645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:222-492
               
               
               Cow position:chr6:15300589-15300849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):221, 18

               
               
               Conread position:222-492
               
               
               Cow position:chr6:35318881-35319155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:222-492
               
               
               Cow position:chr6:51581000-51581278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:222-494
               
               
               Cow position:chr6:7189878-7190144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):197, 36

               
               
               Conread position:223-375
               
               
               Cow position:chr6:59759421-59759271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:223-391
               
               
               Cow position:chr6:59101068-59101237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:223-414
               
               
               Cow position:chr6:32336291-32336092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 145

               
               
               Conread position:223-417
               
               
               Cow position:chr6:24776392-24776197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:223-422
               
               
               Cow position:chr6:47151072-47150872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:223-494
               
               
               Cow position:chr6:32287881-32287613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:223-494
               
               
               Cow position:chr6:38441429-38441151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:223-494
               
               
               Cow position:chr6:49437585-49437307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:223-494
               
               
               Cow position:chr6:62670127-62669843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:225-317
               
               
               Cow position:chr6:37603914-37603822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-397
               
               
               Cow position:chr6:10163924-10163744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:225-397
               
               
               Cow position:chr6:21175584-21175416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:225-407
               
               
               Cow position:chr6:16357690-16357505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:225-417
               
               
               Cow position:chr6:62079167-62078981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:225-442
               
               
               Cow position:chr6:21715300-21715081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):84, 100

               
               
               Conread position:225-459
               
               
               Cow position:chr6:12761530-12761294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:225-486
               
               
               Cow position:chr6:58725617-58725358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):194, 89

               
               
               Conread position:225-490
               
               
               Cow position:chr6:7801150-7801415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:225-492
               
               
               Cow position:chr6:26155394-26155128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:225-494
               
               
               Cow position:chr6:19754829-19755101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:225-494
               
               
               Cow position:chr6:32122145-32121880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):194, 92

               
               
               Conread position:225-494
               
               
               Cow position:chr6:65871280-65871005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):194, 18

               
               
               Conread position:226-407
               
               
               Cow position:chr6:19722856-19722675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:226-409
               
               
               Cow position:chr6:154721-154536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:226-425
               
               
               Cow position:chr6:53346215-53346024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):193, 60

               
               
               Conread position:226-430
               
               
               Cow position:chr6:21350782-21350988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):80, 151

               
               
               Conread position:226-490
               
               
               Cow position:chr6:55417284-55417548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):193, 86

               
               
               Conread position:226-494
               
               
               Cow position:chr6:61169014-61168744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:227-345
               
               
               Cow position:chr6:51862741-51862859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:227-350
               
               
               Cow position:chr6:51359731-51359852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:227-352
               
               
               Cow position:chr6:63762331-63762457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:227-382
               
               
               Cow position:chr6:53138690-53138843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:227-390
               
               
               Cow position:chr6:12099442-12099601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:227-392
               
               
               Cow position:chr6:35728101-35727933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:227-392
               
               
               Cow position:chr6:47790551-47790716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:227-398
               
               
               Cow position:chr6:7291559-7291393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:227-398
               
               
               Cow position:chr6:45633747-45633908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:227-399
               
               
               Cow position:chr6:4760241-4760068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr6:30825529-30825692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr6:54406551-54406727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:227-405
               
               
               Cow position:chr6:4323570-4323400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr6:36570713-36570529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:227-408
               
               
               Cow position:chr6:43540014-43540182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-410
               
               
               Cow position:chr6:34463342-34463522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:227-411
               
               
               Cow position:chr6:6063044-6063229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:227-411
               
               
               Cow position:chr6:37994451-37994273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):164, 14

               
               
               Conread position:227-414
               
               
               Cow position:chr6:1103499-1103677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:227-417
               
               
               Cow position:chr6:1173699-1173898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr6:5095294-5095483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:227-417
               
               
               Cow position:chr6:8562962-8562781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr6:8688602-8688788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):114, 91

               
               
               Conread position:227-417
               
               
               Cow position:chr6:21052198-21052391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):85, 137

               
               
               Conread position:227-417
               
               
               Cow position:chr6:24491284-24491087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:227-417
               
               
               Cow position:chr6:34224322-34224137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:227-417
               
               
               Cow position:chr6:59297293-59297111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-423
               
               
               Cow position:chr6:50883432-50883623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr6:611791-611604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):169, 92

               
               
               Conread position:227-424
               
               
               Cow position:chr6:2583109-2582911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:227-424
               
               
               Cow position:chr6:8468907-8468716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-424
               
               
               Cow position:chr6:45159806-45160007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:227-427
               
               
               Cow position:chr6:49607657-49607440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:227-434
               
               
               Cow position:chr6:30122917-30123128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:227-438
               
               
               Cow position:chr6:48803392-48803596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr6:16091146-16090936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:227-442
               
               
               Cow position:chr6:23938299-23938093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:227-442
               
               
               Cow position:chr6:47356074-47355856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 63

               
               
               Conread position:227-442
               
               
               Cow position:chr6:67282130-67281927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:227-444
               
               
               Cow position:chr6:14263641-14263858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:227-444
               
               
               Cow position:chr6:61631360-61631578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:227-446
               
               
               Cow position:chr6:34569664-34569436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:227-467
               
               
               Cow position:chr6:62683623-62683374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:227-468
               
               
               Cow position:chr6:54831726-54831486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:227-488
               
               
               Cow position:chr6:23401747-23402009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-490
               
               
               Cow position:chr6:5330666-5330389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:227-490
               
               
               Cow position:chr6:67574638-67574382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-493
               
               
               Cow position:chr6:6194854-6195135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 135

               
               
               Conread position:227-494
               
               
               Cow position:chr6:143132-143396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):216, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr6:2078568-2078845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:227-494
               
               
               Cow position:chr6:6965147-6965423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:227-494
               
               
               Cow position:chr6:7119383-7119645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):193, 16

               
               
               Conread position:227-494
               
               
               Cow position:chr6:8125582-8125300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:227-494
               
               
               Cow position:chr6:15937604-15937876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:227-494
               
               
               Cow position:chr6:17313988-17313709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:227-494
               
               
               Cow position:chr6:17997069-17997341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr6:18447267-18447534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):86, 174

               
               
               Conread position:227-494
               
               
               Cow position:chr6:21456429-21456713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:227-494
               
               
               Cow position:chr6:43345192-43345468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr6:50269434-50269698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 119

               
               
               Conread position:227-494
               
               
               Cow position:chr6:50577763-50577499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr6:53841255-53841528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr6:55282044-55282312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:227-494
               
               
               Cow position:chr6:69334067-69334337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 86

               
               
               Conread position:227-495
               
               
               Cow position:chr6:31535326-31535597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:227-496
               
               
               Cow position:chr6:47540594-47540874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:228-364
               
               
               Cow position:chr6:36846369-36846504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:228-413
               
               
               Cow position:chr6:32006209-32006392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr6:21183976-21184190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):85, 139

               
               
               Conread position:228-442
               
               
               Cow position:chr6:54490500-54490700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:228-467
               
               
               Cow position:chr6:24339540-24339289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:228-493
               
               
               Cow position:chr6:37149429-37149164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):191, 32

               
               
               Conread position:228-494
               
               
               Cow position:chr6:6201680-6201403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 141

               
               
               Conread position:228-494
               
               
               Cow position:chr6:15305819-15305550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 175

               
               
               Conread position:228-494
               
               
               Cow position:chr6:36196450-36196187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:228-494
               
               
               Cow position:chr6:37332357-37332080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:228-494
               
               
               Cow position:chr6:59602970-59603236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:229-397
               
               
               Cow position:chr6:24903326-24903499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:229-417
               
               
               Cow position:chr6:36643241-36643433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:229-494
               
               
               Cow position:chr6:15446951-15447228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:229-494
               
               
               Cow position:chr6:18144447-18144166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:229-494
               
               
               Cow position:chr6:19446499-19446228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):72, 175

               
               
               Conread position:230-336
               
               
               Cow position:chr6:31695487-31695385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:230-345
               
               
               Cow position:chr6:38615372-38615257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:230-355
               
               
               Cow position:chr6:456705-456831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:230-375
               
               
               Cow position:chr6:60088230-60088376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:230-381
               
               
               Cow position:chr6:23381421-23381574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-386
               
               
               Cow position:chr6:16016280-16016123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-390
               
               
               Cow position:chr6:31928884-31928722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-392
               
               
               Cow position:chr6:60347380-60347544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 90

               
               
               Conread position:230-397
               
               
               Cow position:chr6:14152646-14152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:230-397
               
               
               Cow position:chr6:29851613-29851447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:230-397
               
               
               Cow position:chr6:37129690-37129855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:230-397
               
               
               Cow position:chr6:55061115-55060941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:230-397
               
               
               Cow position:chr6:62224666-62224500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:230-397
               
               
               Cow position:chr6:66947575-66947743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:230-398
               
               
               Cow position:chr6:8326043-8325874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:230-406
               
               
               Cow position:chr6:16411858-16411680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-407
               
               
               Cow position:chr6:5600617-5600792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:230-407
               
               
               Cow position:chr6:14913989-14914167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:230-407
               
               
               Cow position:chr6:67187923-67187753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr6:8161440-8161626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr6:18440233-18440416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:230-414
               
               
               Cow position:chr6:53765648-53765829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr6:53811831-53811644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr6:68246586-68246772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr6:13367527-13367344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:230-417
               
               
               Cow position:chr6:18776491-18776309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:230-417
               
               
               Cow position:chr6:21399509-21399697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:230-417
               
               
               Cow position:chr6:24536281-24536473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr6:42567741-42567551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr6:49686065-49685877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 173

               
               
               Conread position:230-417
               
               
               Cow position:chr6:55375929-55376120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr6:55548289-55548475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr6:56022307-56022496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr6:58697384-58697573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr6:62724803-62724614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:230-417
               
               
               Cow position:chr6:67728623-67728434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-420
               
               
               Cow position:chr6:93954-94140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-421
               
               
               Cow position:chr6:14383921-14383730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:230-422
               
               
               Cow position:chr6:14150136-14150326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:230-422
               
               
               Cow position:chr6:68272848-68272658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:230-424
               
               
               Cow position:chr6:60778014-60777821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:230-437
               
               
               Cow position:chr6:15974276-15974484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 195

               
               
               Conread position:230-439
               
               
               Cow position:chr6:44541049-44540847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:230-441
               
               
               Cow position:chr6:35171859-35171639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:230-442
               
               
               Cow position:chr6:1475582-1475378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):186, 56

               
               
               Conread position:230-442
               
               
               Cow position:chr6:14056223-14056437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:230-442
               
               
               Cow position:chr6:19293043-19292834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):189, 99

               
               
               Conread position:230-442
               
               
               Cow position:chr6:24110529-24110315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 182

               
               
               Conread position:230-442
               
               
               Cow position:chr6:27888588-27888384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):189, 34

               
               
               Conread position:230-442
               
               
               Cow position:chr6:34560753-34560971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr6:40032424-40032224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr6:42728891-42728678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:230-442
               
               
               Cow position:chr6:47647989-47648203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:230-442
               
               
               Cow position:chr6:54127576-54127780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):186, 88

               
               
               Conread position:230-442
               
               
               Cow position:chr6:64428949-64429163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 156

               
               
               Conread position:230-442
               
               
               Cow position:chr6:66259982-66259762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-443
               
               
               Cow position:chr6:22876683-22876899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:230-443
               
               
               Cow position:chr6:42035015-42034804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):119, 76

               
               
               Conread position:230-444
               
               
               Cow position:chr6:8366059-8365842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:230-444
               
               
               Cow position:chr6:32453634-32453416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:230-446
               
               
               Cow position:chr6:15587347-15587566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:230-448
               
               
               Cow position:chr6:5601945-5601729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 146

               
               
               Conread position:230-488
               
               
               Cow position:chr6:53546274-53546016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-490
               
               
               Cow position:chr6:23353801-23353532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-490
               
               
               Cow position:chr6:58370992-58370733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):182, 76

               
               
               Conread position:230-490
               
               
               Cow position:chr6:64432178-64431914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:230-490
               
               
               Cow position:chr6:65264306-65264559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:230-491
               
               
               Cow position:chr6:7130616-7130912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr6:5844923-5845196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:230-493
               
               
               Cow position:chr6:17414205-17414473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:230-493
               
               
               Cow position:chr6:53024566-53024830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:230-494
               
               
               Cow position:chr6:7539818-7539551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):189, 143

               
               
               Conread position:230-494
               
               
               Cow position:chr6:13040698-13040426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:230-494
               
               
               Cow position:chr6:16765153-16765422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr6:25614845-25615129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr6:35181009-35181285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:230-494
               
               
               Cow position:chr6:35436232-35435967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):170, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr6:38640477-38640206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:230-494
               
               
               Cow position:chr6:62929743-62929470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr6:63720434-63720170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):189, 17

               
               
               Conread position:230-494
               
               
               Cow position:chr6:68685785-68685529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):213, 77

               
               
               Conread position:230-495
               
               
               Cow position:chr6:18903792-18904079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-496
               
               
               Cow position:chr6:39358098-39358375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):184, 84

               
               
               Conread position:231-341
               
               
               Cow position:chr6:51842063-51842176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-351
               
               
               Cow position:chr6:24472400-24472520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr6:57404892-57405038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:231-377
               
               
               Cow position:chr6:30688267-30688413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:231-378
               
               
               Cow position:chr6:55196460-55196310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:231-380
               
               
               Cow position:chr6:63233761-63233611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:231-390
               
               
               Cow position:chr6:59687566-59687727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-397
               
               
               Cow position:chr6:4699949-4699786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-407
               
               
               Cow position:chr6:61514954-61515119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:231-414
               
               
               Cow position:chr6:47246026-47245842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):108, 163

               
               
               Conread position:231-424
               
               
               Cow position:chr6:21004924-21004728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:231-426
               
               
               Cow position:chr6:63168519-63168715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 174

               
               
               Conread position:231-436
               
               
               Cow position:chr6:14915138-14915351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:231-442
               
               
               Cow position:chr6:48282239-48282025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:231-442
               
               
               Cow position:chr6:65903382-65903591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 72

               
               
               Conread position:231-443
               
               
               Cow position:chr6:44078759-44078550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):180, 169

               
               
               Conread position:231-446
               
               
               Cow position:chr6:47959049-47958843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:231-468
               
               
               Cow position:chr6:16380792-16380552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 223

               
               
               Conread position:231-469
               
               
               Cow position:chr6:6168931-6168694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:231-485
               
               
               Cow position:chr6:10613074-10612837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):188, 71

               
               
               Conread position:231-488
               
               
               Cow position:chr6:13653590-13653331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:231-490
               
               
               Cow position:chr6:48988678-48988419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 191

               
               
               Conread position:231-492
               
               
               Cow position:chr6:4469010-4468745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:231-493
               
               
               Cow position:chr6:61269561-61269286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:231-494
               
               
               Cow position:chr6:120481-120220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):197, 36

               
               
               Conread position:231-494
               
               
               Cow position:chr6:8094043-8094316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:231-494
               
               
               Cow position:chr6:8966332-8966066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):188, 76

               
               
               Conread position:231-494
               
               
               Cow position:chr6:26728300-26728551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr6:29485327-29485061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr6:36203065-36202795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):98, 77

               
               
               Conread position:231-494
               
               
               Cow position:chr6:41655811-41656069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):188, 72

               
               
               Conread position:231-494
               
               
               Cow position:chr6:49421552-49421814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):188, 42

               
               
               Conread position:231-494
               
               
               Cow position:chr6:60273767-60274036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:231-494
               
               
               Cow position:chr6:68376071-68376350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 62

               
               
               Conread position:232-355
               
               
               Cow position:chr6:60674074-60673955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-387
               
               
               Cow position:chr6:6460749-6460606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:232-388
               
               
               Cow position:chr6:50444872-50445030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 131

               
               
               Conread position:232-389
               
               
               Cow position:chr6:6547271-6547421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr6:38020920-38020750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:232-399
               
               
               Cow position:chr6:55646706-55646874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:232-412
               
               
               Cow position:chr6:35341944-35342118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):135, 36

               
               
               Conread position:232-414
               
               
               Cow position:chr6:26408259-26408443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:232-414
               
               
               Cow position:chr6:47173794-47173966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:232-417
               
               
               Cow position:chr6:8731662-8731472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:232-417
               
               
               Cow position:chr6:37692993-37692809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:232-426
               
               
               Cow position:chr6:2547504-2547304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:232-426
               
               
               Cow position:chr6:66979114-66978918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:232-431
               
               
               Cow position:chr6:36939117-36938913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 193

               
               
               Conread position:232-434
               
               
               Cow position:chr6:12631736-12631539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):189, 41

               
               
               Conread position:232-442
               
               
               Cow position:chr6:43787665-43787878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:232-465
               
               
               Cow position:chr6:5820017-5820235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):188, 54

               
               
               Conread position:232-492
               
               
               Cow position:chr6:23696237-23695971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-494
               
               
               Cow position:chr6:4383716-4383461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:232-494
               
               
               Cow position:chr6:19045871-19045601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr6:19264258-19264521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:232-494
               
               
               Cow position:chr6:32268643-32268901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:232-494
               
               
               Cow position:chr6:35989995-35990260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:232-494
               
               
               Cow position:chr6:48097360-48097627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:232-494
               
               
               Cow position:chr6:56850260-56849987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:232-494
               
               
               Cow position:chr6:60468474-60468212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:233-347
               
               
               Cow position:chr6:23173290-23173180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:233-404
               
               
               Cow position:chr6:48278653-48278817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-414
               
               
               Cow position:chr6:23024856-23025039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):69, 114

               
               
               Conread position:233-417
               
               
               Cow position:chr6:57467841-57467655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr6:66434196-66434009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 168

               
               
               Conread position:233-425
               
               
               Cow position:chr6:42483657-42483468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:233-430
               
               
               Cow position:chr6:22215220-22215425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 195

               
               
               Conread position:233-431
               
               
               Cow position:chr6:3937029-3936828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 172

               
               
               Conread position:233-442
               
               
               Cow position:chr6:16102949-16103163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:233-443
               
               
               Cow position:chr6:51933781-51933586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):186, 57

               
               
               Conread position:233-461
               
               
               Cow position:chr6:21470190-21470416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:233-489
               
               
               Cow position:chr6:67451422-67451667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):186, 77

               
               
               Conread position:233-490
               
               
               Cow position:chr6:21293256-21293518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):186, 90

               
               
               Conread position:233-492
               
               
               Cow position:chr6:6060332-6060592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:233-492
               
               
               Cow position:chr6:30024119-30023870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:233-493
               
               
               Cow position:chr6:8600247-8599981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:233-494
               
               
               Cow position:chr6:11247010-11246738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:233-494
               
               
               Cow position:chr6:15243081-15242807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr6:16287825-16288077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):186, 40

               
               
               Conread position:233-494
               
               
               Cow position:chr6:18117807-18118077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:233-494
               
               
               Cow position:chr6:21061649-21061912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):168, 71

               
               
               Conread position:233-494
               
               
               Cow position:chr6:38771514-38771261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:233-494
               
               
               Cow position:chr6:47520296-47520025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:233-496
               
               
               Cow position:chr6:32126294-32126035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:234-387
               
               
               Cow position:chr6:35775725-35775570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:234-397
               
               
               Cow position:chr6:45920980-45921135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:234-398
               
               
               Cow position:chr6:54840259-54840430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 129

               
               
               Conread position:234-402
               
               
               Cow position:chr6:16502801-16502972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:234-411
               
               
               Cow position:chr6:43607001-43607189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-412
               
               
               Cow position:chr6:67211686-67211861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:234-414
               
               
               Cow position:chr6:6996658-6996837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:234-414
               
               
               Cow position:chr6:34423219-34423397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr6:44543906-44544087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:234-415
               
               
               Cow position:chr6:43906440-43906623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr6:28561928-28562110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:234-417
               
               
               Cow position:chr6:30983756-30983578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:234-417
               
               
               Cow position:chr6:47783108-47782920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr6:52190709-52190888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr6:54846035-54846220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-429
               
               
               Cow position:chr6:15266126-15266307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):185, 71

               
               
               Conread position:234-431
               
               
               Cow position:chr6:1866972-1866775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:234-438
               
               
               Cow position:chr6:28155932-28156122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-440
               
               
               Cow position:chr6:48436071-48435869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:234-442
               
               
               Cow position:chr6:1704035-1703837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 27

               
               
               Conread position:234-442
               
               
               Cow position:chr6:13565326-13565121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:234-442
               
               
               Cow position:chr6:15243502-15243288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:234-442
               
               
               Cow position:chr6:21475966-21475760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):185, 36

               
               
               Conread position:234-442
               
               
               Cow position:chr6:29775859-29775655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:234-459
               
               
               Cow position:chr6:57545988-57546214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:234-481
               
               
               Cow position:chr6:66839434-66839189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:234-489
               
               
               Cow position:chr6:13687575-13687834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:234-490
               
               
               Cow position:chr6:16700495-16700244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:234-493
               
               
               Cow position:chr6:10176058-10176320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):74, 228

               
               
               Conread position:234-493
               
               
               Cow position:chr6:51529949-51530209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:234-494
               
               
               Cow position:chr6:3351269-3350994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:234-494
               
               
               Cow position:chr6:19259117-19259370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):49, 59

               
               
               Conread position:234-494
               
               
               Cow position:chr6:46282751-46283033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 137

               
               
               Conread position:234-494
               
               
               Cow position:chr6:52478170-52478439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr6:60819756-60819491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:235-349
               
               
               Cow position:chr6:16738855-16738739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-361
               
               
               Cow position:chr6:65831603-65831476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:235-385
               
               
               Cow position:chr6:47989666-47989516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:235-387
               
               
               Cow position:chr6:54828080-54828234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 128

               
               
               Conread position:235-391
               
               
               Cow position:chr6:47672912-47673062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:235-392
               
               
               Cow position:chr6:62805885-62805726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:235-396
               
               
               Cow position:chr6:8369664-8369501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:235-397
               
               
               Cow position:chr6:16137527-16137692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr6:19225152-19225305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:235-397
               
               
               Cow position:chr6:36225350-36225187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 111

               
               
               Conread position:235-398
               
               
               Cow position:chr6:34251058-34251221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:235-414
               
               
               Cow position:chr6:33960408-33960588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr6:44566666-44566486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:235-414
               
               
               Cow position:chr6:55919692-55919873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr6:63020582-63020404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 73

               
               
               Conread position:235-417
               
               
               Cow position:chr6:28088807-28088989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):78, 66

               
               
               Conread position:235-417
               
               
               Cow position:chr6:35726330-35726153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:235-417
               
               
               Cow position:chr6:55044401-55044583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:235-417
               
               
               Cow position:chr6:58304652-58304473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:235-431
               
               
               Cow position:chr6:41657505-41657311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):184, 75

               
               
               Conread position:235-442
               
               
               Cow position:chr6:30501884-30502091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:235-442
               
               
               Cow position:chr6:37395162-37395368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:235-442
               
               
               Cow position:chr6:55296852-55297062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:235-443
               
               
               Cow position:chr6:10039966-10039755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:235-455
               
               
               Cow position:chr6:33302636-33302414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:235-472
               
               
               Cow position:chr6:53145440-53145678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-490
               
               
               Cow position:chr6:33206969-33206721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):186, 71

               
               
               Conread position:235-493
               
               
               Cow position:chr6:66570665-66570413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr6:12669338-12669078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr6:22850012-22850275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr6:33510029-33509765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:236-379
               
               
               Cow position:chr6:43770662-43770802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:236-390
               
               
               Cow position:chr6:40833781-40833929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:236-390
               
               
               Cow position:chr6:66302368-66302520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:236-391
               
               
               Cow position:chr6:13097159-13097316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:236-414
               
               
               Cow position:chr6:26638631-26638449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:236-496
               
               
               Cow position:chr6:44194317-44194573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):180, 31

               
               
               Conread position:237-451
               
               
               Cow position:chr6:45094816-45094582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 129

               
               
               Conread position:238-382
               
               
               Cow position:chr6:6117411-6117551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:238-399
               
               
               Cow position:chr6:8726914-8726754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:238-442
               
               
               Cow position:chr6:42118929-42118735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):181, 75

               
               
               Conread position:238-442
               
               
               Cow position:chr6:60118379-60118183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):181, 66

               
               
               Conread position:238-445
               
               
               Cow position:chr6:2585177-2584972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:238-471
               
               
               Cow position:chr6:24031600-24031379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):181, 68

               
               
               Conread position:238-494
               
               
               Cow position:chr6:24781314-24781579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:238-494
               
               
               Cow position:chr6:38853419-38853680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 239

               
               
               Conread position:238-494
               
               
               Cow position:chr6:49398392-49398639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):181, 72

               
               
               Conread position:239-399
               
               
               Cow position:chr6:2014362-2014205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:239-485
               
               
               Cow position:chr6:66131555-66131291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 186

               
               
               Conread position:240-335
               
               
               Cow position:chr6:36592398-36592305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-376
               
               
               Cow position:chr6:11262976-11262846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr6:57320363-57320504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:240-385
               
               
               Cow position:chr6:56799656-56799802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-388
               
               
               Cow position:chr6:26764587-26764740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr6:5445903-5445746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:240-397
               
               
               Cow position:chr6:38033093-38032936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr6:46173023-46173182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:240-407
               
               
               Cow position:chr6:35984899-35985068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:240-408
               
               
               Cow position:chr6:69374599-69374765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 119

               
               
               Conread position:240-410
               
               
               Cow position:chr6:34076398-34076227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:240-410
               
               
               Cow position:chr6:62437652-62437480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr6:33150059-33150227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr6:57089439-57089268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:240-414
               
               
               Cow position:chr6:54821069-54820893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:240-414
               
               
               Cow position:chr6:55405150-55404973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:240-414
               
               
               Cow position:chr6:67963828-67963996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:240-417
               
               
               Cow position:chr6:15172791-15172624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:240-419
               
               
               Cow position:chr6:6850550-6850377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):143, 28

               
               
               Conread position:240-424
               
               
               Cow position:chr6:8186952-8187136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:240-424
               
               
               Cow position:chr6:13742222-13742039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:240-424
               
               
               Cow position:chr6:34721876-34722054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:240-425
               
               
               Cow position:chr6:60186416-60186613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:240-427
               
               
               Cow position:chr6:56581819-56582012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:240-429
               
               
               Cow position:chr6:21083306-21083495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):87, 74

               
               
               Conread position:240-430
               
               
               Cow position:chr6:36537128-36537316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-431
               
               
               Cow position:chr6:25772984-25773172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:240-440
               
               
               Cow position:chr6:21235282-21235077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:240-440
               
               
               Cow position:chr6:57079661-57079458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr6:23532881-23532690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr6:50771126-50771326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:240-442
               
               
               Cow position:chr6:61110017-61109820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):176, 74

               
               
               Conread position:240-442
               
               
               Cow position:chr6:67069580-67069782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:240-444
               
               
               Cow position:chr6:3952756-3952549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:240-444
               
               
               Cow position:chr6:18080281-18080484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:240-467
               
               
               Cow position:chr6:34475323-34475555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 69

               
               
               Conread position:240-468
               
               
               Cow position:chr6:12928375-12928146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:240-472
               
               
               Cow position:chr6:37827712-37827951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-490
               
               
               Cow position:chr6:19996850-19996596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:240-490
               
               
               Cow position:chr6:38610209-38609948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 83

               
               
               Conread position:240-493
               
               
               Cow position:chr6:50504691-50504429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr6:581505-581769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:240-494
               
               
               Cow position:chr6:693910-694176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):114, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr6:5609207-5609471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):67, 186

               
               
               Conread position:240-494
               
               
               Cow position:chr6:8499362-8499121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):210, 36

               
               
               Conread position:240-494
               
               
               Cow position:chr6:9302488-9302740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):179, 61

               
               
               Conread position:240-494
               
               
               Cow position:chr6:17068420-17068674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr6:18954857-18955090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):145, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr6:19402080-19401831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 68

               
               
               Conread position:240-494
               
               
               Cow position:chr6:38207250-38207516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:240-494
               
               
               Cow position:chr6:41014739-41015002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr6:60265933-60266207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr6:62056846-62056587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:241-376
               
               
               Cow position:chr6:62849155-62849025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-393
               
               
               Cow position:chr6:21346919-21347068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:241-399
               
               
               Cow position:chr6:17194461-17194288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:241-406
               
               
               Cow position:chr6:10225416-10225586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:241-413
               
               
               Cow position:chr6:58173576-58173412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:241-414
               
               
               Cow position:chr6:54889838-54889661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:241-417
               
               
               Cow position:chr6:53711637-53711461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-424
               
               
               Cow position:chr6:26054666-26054854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:241-431
               
               
               Cow position:chr6:12623743-12623559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):178, 65

               
               
               Conread position:241-437
               
               
               Cow position:chr6:19563245-19563448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:241-442
               
               
               Cow position:chr6:46558288-46558090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:241-442
               
               
               Cow position:chr6:60850933-60850733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):178, 65

               
               
               Conread position:241-477
               
               
               Cow position:chr6:31847010-31847234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-492
               
               
               Cow position:chr6:21231746-21231502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:241-493
               
               
               Cow position:chr6:32866987-32867238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):165, 49

               
               
               Conread position:241-494
               
               
               Cow position:chr6:7128170-7128431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):178, 72

               
               
               Conread position:241-494
               
               
               Cow position:chr6:46466052-46465798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:241-494
               
               
               Cow position:chr6:47575125-47574881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):178, 52

               
               
               Conread position:241-494
               
               
               Cow position:chr6:53460337-53460597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:241-494
               
               
               Cow position:chr6:67951191-67950927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:241-496
               
               
               Cow position:chr6:10105749-10106008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:242-494
               
               
               Cow position:chr6:17794522-17794786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr6:43134708-43134963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:242-494
               
               
               Cow position:chr6:45690386-45690628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 8

               
               
               Conread position:242-494
               
               
               Cow position:chr6:46859938-46860193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):177, 5

               
               
               Conread position:242-494
               
               
               Cow position:chr6:60143966-60144224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 76

               
               
               Conread position:244-351
               
               
               Cow position:chr6:24045128-24045235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:244-406
               
               
               Cow position:chr6:63182516-63182358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:244-441
               
               
               Cow position:chr6:1941603-1941798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):143, 70

               
               
               Conread position:244-494
               
               
               Cow position:chr6:63066068-63065799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:245-398
               
               
               Cow position:chr6:28559770-28559615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):67, 80

               
               
               Conread position:245-411
               
               
               Cow position:chr6:9832427-9832271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:245-430
               
               
               Cow position:chr6:39093975-39093796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:245-442
               
               
               Cow position:chr6:48379381-48379581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-492
               
               
               Cow position:chr6:51526721-51526469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:246-442
               
               
               Cow position:chr6:22525554-22525363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:246-494
               
               
               Cow position:chr6:60740239-60739991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):173, 57

               
               
               Conread position:247-404
               
               
               Cow position:chr6:53732213-53732053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:247-406
               
               
               Cow position:chr6:27219394-27219236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):151, 69

               
               
               Conread position:247-414
               
               
               Cow position:chr6:15058603-15058438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:247-490
               
               
               Cow position:chr6:4691736-4692000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:247-494
               
               
               Cow position:chr6:41375998-41375745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):172, 153

               
               
               Conread position:247-494
               
               
               Cow position:chr6:54365101-54365355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:247-494
               
               
               Cow position:chr6:56986420-56986670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:248-392
               
               
               Cow position:chr6:47450692-47450838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:248-397
               
               
               Cow position:chr6:14471592-14471441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:248-399
               
               
               Cow position:chr6:2758009-2757861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-410
               
               
               Cow position:chr6:61644629-61644793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:248-414
               
               
               Cow position:chr6:48793007-48792839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:248-414
               
               
               Cow position:chr6:63012557-63012390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:248-415
               
               
               Cow position:chr6:47022786-47022621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:248-417
               
               
               Cow position:chr6:41733862-41733690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:248-428
               
               
               Cow position:chr6:34380589-34380768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:248-487
               
               
               Cow position:chr6:60517065-60516808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):59, 158

               
               
               Conread position:248-494
               
               
               Cow position:chr6:16262008-16261759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 209

               
               
               Conread position:248-494
               
               
               Cow position:chr6:54133038-54132786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):171, 43

               
               
               Conread position:249-377
               
               
               Cow position:chr6:68602468-68602342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:249-399
               
               
               Cow position:chr6:40682442-40682589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:249-442
               
               
               Cow position:chr6:5113821-5114016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 164

               
               
               Conread position:249-492
               
               
               Cow position:chr6:21587208-21587440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:249-494
               
               
               Cow position:chr6:68816396-68816141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:250-417
               
               
               Cow position:chr6:65534943-65535112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:250-440
               
               
               Cow position:chr6:24905847-24905661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):169, 62

               
               
               Conread position:250-443
               
               
               Cow position:chr6:47305567-47305373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:250-444
               
               
               Cow position:chr6:61681303-61681108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 75

               
               
               Conread position:250-494
               
               
               Cow position:chr6:12091761-12092018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:250-494
               
               
               Cow position:chr6:51835623-51835373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:252-429
               
               
               Cow position:chr6:410997-411168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:252-442
               
               
               Cow position:chr6:19696032-19695842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 158

               
               
               Conread position:252-442
               
               
               Cow position:chr6:33450754-33450937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:252-494
               
               
               Cow position:chr6:34119140-34119380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):167, 60

               
               
               Conread position:253-407
               
               
               Cow position:chr6:39415047-39414891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:253-443
               
               
               Cow position:chr6:1870975-1871166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:254-494
               
               
               Cow position:chr6:28483238-28482995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 102

               
               
               Conread position:255-442
               
               
               Cow position:chr6:9718697-9718879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:256-468
               
               
               Cow position:chr6:35842879-35842661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:256-469
               
               
               Cow position:chr6:58459936-58459722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:258-494
               
               
               Cow position:chr6:36920758-36921000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:259-389
               
               
               Cow position:chr6:53235437-53235566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:259-494
               
               
               Cow position:chr6:38641710-38641469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:261-417
               
               
               Cow position:chr6:445542-445382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:262-494
               
               
               Cow position:chr6:26915541-26915305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 56

               
               
               Conread position:264-496
               
               
               Cow position:chr6:67643478-67643718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:266-393
               
               
               Cow position:chr6:48520849-48520973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:266-425
               
               
               Cow position:chr6:30895781-30895941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:266-442
               
               
               Cow position:chr6:40774125-40774299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:266-493
               
               
               Cow position:chr6:50984434-50984201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:267-442
               
               
               Cow position:chr6:48469219-48469033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:270-442
               
               
               Cow position:chr6:31865300-31865131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:270-492
               
               
               Cow position:chr6:31078663-31078895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:270-493
               
               
               Cow position:chr6:54990795-54991027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:270-494
               
               
               Cow position:chr6:61523999-61524232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):149, 204

               
               
               Conread position:273-442
               
               
               Cow position:chr6:47799495-47799326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:274-411
               
               
               Cow position:chr6:55450135-55449998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-485
               
               
               Cow position:chr6:59301582-59301804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:274-494
               
               
               Cow position:chr6:57571679-57571453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:278-494
               
               
               Cow position:chr6:46571307-46571092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:281-417
               
               
               Cow position:chr6:58076590-58076452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:281-488
               
               
               Cow position:chr6:16352169-16352366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:284-397
               
               
               Cow position:chr6:19455449-19455337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:289-494
               
               
               Cow position:chr6:48112382-48112173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:301-430
               
               
               Cow position:chr6:37603742-37603611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:302-422
               
               
               Cow position:chr6:47676186-47676069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:302-430
               
               
               Cow position:chr6:107250-107380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:302-438
               
               
               Cow position:chr6:19131604-19131467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr6:21066709-21066851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr6:54867691-54867550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr6:60451602-60451460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-489
               
               
               Cow position:chr6:8209430-8209619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:302-494
               
               
               Cow position:chr6:6343605-6343405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 186

               
               
               Conread position:302-494
               
               
               Cow position:chr6:23465859-23466054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:302-494
               
               
               Cow position:chr6:55535578-55535774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:303-494
               
               
               Cow position:chr6:582100-582297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 96

               
               
               Conread position:305-434
               
               
               Cow position:chr6:28900497-28900367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-494
               
               
               Cow position:chr6:6401121-6400926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:305-494
               
               
               Cow position:chr6:21869478-21869676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 164

               
               
               Conread position:310-490
               
               
               Cow position:chr6:53090172-53089986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:311-491
               
               
               Cow position:chr6:1422651-1422464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:318-494
               
               
               Cow position:chr6:50976208-50976023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:318-494
               
               
               Cow position:chr6:53652198-53652017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 152

               
               
               Conread position:320-492
               
               
               Cow position:chr6:66375177-66375353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:323-493
               
               
               Cow position:chr6:38218820-38218645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:324-491
               
               
               Cow position:chr6:58597353-58597531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:324-493
               
               
               Cow position:chr6:28976888-28977068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:329-493
               
               
               Cow position:chr6:47640286-47640457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 6

               
               
               Conread position:329-494
               
               
               Cow position:chr6:32853334-32853161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 72

               
               
               Conread position:329-494
               
               
               Cow position:chr6:43651899-43651739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 116

               
               
               Conread position:329-494
               
               
               Cow position:chr6:60350145-60350320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:332-494
               
               
               Cow position:chr6:32516966-32517125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:349-494
               
               
               Cow position:chr6:61608639-61608486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 127

               
               
               Conread position:184-414
               
               
               Cow position:chr7:66283691-66283911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:203-422
               
               
               Cow position:chr7:48020697-48020484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:204-442
               
               
               Cow position:chr7:39946974-39947214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:212-399
               
               
               Cow position:chr7:465873-466070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 175

               
               
               Conread position:213-490
               
               
               Cow position:chr7:11066735-11066460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):228, 61

               
               
               Conread position:215-442
               
               
               Cow position:chr7:51685275-51685049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:216-316
               
               
               Cow position:chr7:10889057-10888954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:216-493
               
               
               Cow position:chr7:38458646-38458353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:217-442
               
               
               Cow position:chr7:46856705-46856928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:217-485
               
               
               Cow position:chr7:60547405-60547680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:218-494
               
               
               Cow position:chr7:68170344-68170628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:219-442
               
               
               Cow position:chr7:11487419-11487637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:220-442
               
               
               Cow position:chr7:50021209-50021423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):196, 47

               
               
               Conread position:220-493
               
               
               Cow position:chr7:22793596-22793328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:220-494
               
               
               Cow position:chr7:14029563-14029299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):199, 94

               
               
               Conread position:220-494
               
               
               Cow position:chr7:57593680-57593405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):199, 20

               
               
               Conread position:220-494
               
               
               Cow position:chr7:63946343-63946606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):196, 27

               
               
               Conread position:221-443
               
               
               Cow position:chr7:34433022-34433247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:221-494
               
               
               Cow position:chr7:35300165-35300442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):168, 60

               
               
               Conread position:222-316
               
               
               Cow position:chr7:58681768-58681862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-378
               
               
               Cow position:chr7:41374451-41374604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:222-406
               
               
               Cow position:chr7:45070040-45070226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 54

               
               
               Conread position:222-417
               
               
               Cow position:chr7:8523526-8523719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):135, 99

               
               
               Conread position:222-417
               
               
               Cow position:chr7:35096768-35096964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:222-430
               
               
               Cow position:chr7:53834333-53834541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:222-440
               
               
               Cow position:chr7:40414749-40414960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):197, 18

               
               
               Conread position:222-442
               
               
               Cow position:chr7:26909508-26909725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr7:68540340-68540565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:222-442
               
               
               Cow position:chr7:68857328-68857551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 143

               
               
               Conread position:222-494
               
               
               Cow position:chr7:51644901-51644625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:223-352
               
               
               Cow position:chr7:22832502-22832367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:223-395
               
               
               Cow position:chr7:28109837-28109663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:223-399
               
               
               Cow position:chr7:5724430-5724259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:223-399
               
               
               Cow position:chr7:9017913-9017750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:223-417
               
               
               Cow position:chr7:8387159-8387353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:223-429
               
               
               Cow position:chr7:12918329-12918529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:223-489
               
               
               Cow position:chr7:25393553-25393285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:223-494
               
               
               Cow position:chr7:15570292-15570019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:223-494
               
               
               Cow position:chr7:20051207-20051487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:223-496
               
               
               Cow position:chr7:33393562-33393281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:224-385
               
               
               Cow position:chr7:22616121-22615952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:224-399
               
               
               Cow position:chr7:48900812-48900640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 71

               
               
               Conread position:224-407
               
               
               Cow position:chr7:38136058-38135877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:224-428
               
               
               Cow position:chr7:59942038-59941838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):140, 75

               
               
               Conread position:224-494
               
               
               Cow position:chr7:8109993-8110272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:225-377
               
               
               Cow position:chr7:9908077-9908221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:225-380
               
               
               Cow position:chr7:32373286-32373135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:225-392
               
               
               Cow position:chr7:55315952-55316116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:225-414
               
               
               Cow position:chr7:39528541-39528721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:225-417
               
               
               Cow position:chr7:43077657-43077461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:225-417
               
               
               Cow position:chr7:50442644-50442833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:225-438
               
               
               Cow position:chr7:19652186-19652399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):157, 91

               
               
               Conread position:225-443
               
               
               Cow position:chr7:57242969-57243198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-482
               
               
               Cow position:chr7:31240950-31240677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 162

               
               
               Conread position:225-492
               
               
               Cow position:chr7:32805809-32806080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 65

               
               
               Conread position:225-493
               
               
               Cow position:chr7:23205378-23205653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:225-493
               
               
               Cow position:chr7:67873447-67873169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:225-494
               
               
               Cow position:chr7:4452856-4452581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:225-494
               
               
               Cow position:chr7:16022544-16022272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):194, 95

               
               
               Conread position:225-494
               
               
               Cow position:chr7:35274834-35275103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):194, 71

               
               
               Conread position:226-337
               
               
               Cow position:chr7:23817902-23817791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:226-414
               
               
               Cow position:chr7:68144762-68144581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:226-494
               
               
               Cow position:chr7:2578984-2579259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:226-494
               
               
               Cow position:chr7:31170708-31170974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):193, 92

               
               
               Conread position:227-316
               
               
               Cow position:chr7:61758497-61758586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-345
               
               
               Cow position:chr7:5624140-5624024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-375
               
               
               Cow position:chr7:19241873-19242024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:227-377
               
               
               Cow position:chr7:18254091-18253946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-378
               
               
               Cow position:chr7:7461866-7462019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-378
               
               
               Cow position:chr7:11020379-11020531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:227-387
               
               
               Cow position:chr7:30290691-30290854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:227-390
               
               
               Cow position:chr7:16285325-16285489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 132

               
               
               Conread position:227-391
               
               
               Cow position:chr7:16574852-16574687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:227-392
               
               
               Cow position:chr7:17772065-17772232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:227-399
               
               
               Cow position:chr7:10385131-10384958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:227-399
               
               
               Cow position:chr7:18016920-18016753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr7:39988983-39988813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-406
               
               
               Cow position:chr7:20936378-20936554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:227-407
               
               
               Cow position:chr7:12329976-12330155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr7:30012079-30011903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-407
               
               
               Cow position:chr7:55498839-55499018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:227-411
               
               
               Cow position:chr7:9858602-9858422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr7:26309416-26309602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-414
               
               
               Cow position:chr7:39621425-39621229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 143

               
               
               Conread position:227-417
               
               
               Cow position:chr7:7475856-7476052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr7:17000979-17000787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:227-417
               
               
               Cow position:chr7:19466008-19466189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr7:39939988-39939797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:227-417
               
               
               Cow position:chr7:40688193-40688003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 72

               
               
               Conread position:227-417
               
               
               Cow position:chr7:46191709-46191898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:227-417
               
               
               Cow position:chr7:52839372-52839557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:227-426
               
               
               Cow position:chr7:46149393-46149201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:227-426
               
               
               Cow position:chr7:60121800-60121605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:227-427
               
               
               Cow position:chr7:31204243-31204451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-427
               
               
               Cow position:chr7:48508699-48508496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:227-430
               
               
               Cow position:chr7:50166278-50166076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):182, 34

               
               
               Conread position:227-431
               
               
               Cow position:chr7:11054802-11054597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:227-431
               
               
               Cow position:chr7:17752555-17752753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):192, 80

               
               
               Conread position:227-431
               
               
               Cow position:chr7:40672276-40672072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-440
               
               
               Cow position:chr7:6821295-6821082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:227-442
               
               
               Cow position:chr7:4129537-4129745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr7:11897712-11897500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 104

               
               
               Conread position:227-442
               
               
               Cow position:chr7:33370644-33370427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:227-442
               
               
               Cow position:chr7:37455575-37455353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:227-483
               
               
               Cow position:chr7:23678178-23677916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-484
               
               
               Cow position:chr7:53653519-53653769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-488
               
               
               Cow position:chr7:14524721-14524463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:227-489
               
               
               Cow position:chr7:4719976-4720250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):77, 177

               
               
               Conread position:227-490
               
               
               Cow position:chr7:53053155-53053424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:227-491
               
               
               Cow position:chr7:5026925-5027182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 30

               
               
               Conread position:227-493
               
               
               Cow position:chr7:29510184-29509925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-493
               
               
               Cow position:chr7:40321728-40321465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr7:2897394-2897145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):173, 86

               
               
               Conread position:227-494
               
               
               Cow position:chr7:4812258-4811998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:227-494
               
               
               Cow position:chr7:9070703-9070438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr7:9434239-9433985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:227-494
               
               
               Cow position:chr7:15559934-15559663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:227-494
               
               
               Cow position:chr7:32259947-32260226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:227-494
               
               
               Cow position:chr7:33720286-33720011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:227-494
               
               
               Cow position:chr7:39416156-39415885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:227-494
               
               
               Cow position:chr7:40009078-40008798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr7:40406894-40406627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:227-494
               
               
               Cow position:chr7:44596457-44596722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):197, 88

               
               
               Conread position:227-494
               
               
               Cow position:chr7:52776512-52776779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):192, 32

               
               
               Conread position:227-494
               
               
               Cow position:chr7:55687932-55688219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):68, 172

               
               
               Conread position:227-494
               
               
               Cow position:chr7:60732380-60732662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:227-494
               
               
               Cow position:chr7:61699453-61699719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:227-495
               
               
               Cow position:chr7:52378872-52378615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:228-371
               
               
               Cow position:chr7:1797165-1797313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:228-415
               
               
               Cow position:chr7:2247827-2248018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:228-420
               
               
               Cow position:chr7:62542914-62542721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:228-442
               
               
               Cow position:chr7:23464511-23464297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:228-442
               
               
               Cow position:chr7:68240707-68240499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):191, 39

               
               
               Conread position:228-494
               
               
               Cow position:chr7:29479772-29479503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:228-495
               
               
               Cow position:chr7:41871859-41872116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:229-369
               
               
               Cow position:chr7:43102943-43103084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:229-390
               
               
               Cow position:chr7:30666860-30666715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:229-411
               
               
               Cow position:chr7:40520361-40520544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:229-417
               
               
               Cow position:chr7:14535168-14534984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:229-417
               
               
               Cow position:chr7:63378646-63378455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:229-434
               
               
               Cow position:chr7:58329656-58329861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:229-440
               
               
               Cow position:chr7:62953759-62953551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):144, 57

               
               
               Conread position:229-442
               
               
               Cow position:chr7:6116119-6116330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:229-442
               
               
               Cow position:chr7:13594023-13593804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:229-494
               
               
               Cow position:chr7:54712664-54712396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 80

               
               
               Conread position:230-313
               
               
               Cow position:chr7:24168736-24168653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-316
               
               
               Cow position:chr7:1804476-1804564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-337
               
               
               Cow position:chr7:56423248-56423355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:230-340
               
               
               Cow position:chr7:23615706-23615818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-374
               
               
               Cow position:chr7:9744695-9744841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-376
               
               
               Cow position:chr7:9093531-9093679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:230-379
               
               
               Cow position:chr7:40361900-40361750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 116

               
               
               Conread position:230-380
               
               
               Cow position:chr7:34224383-34224243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 77

               
               
               Conread position:230-382
               
               
               Cow position:chr7:11151222-11151374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:230-382
               
               
               Cow position:chr7:32009033-32009193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:230-385
               
               
               Cow position:chr7:32823807-32823964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:230-389
               
               
               Cow position:chr7:10466494-10466650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:230-390
               
               
               Cow position:chr7:1763668-1763512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:230-397
               
               
               Cow position:chr7:32549161-32549330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:230-399
               
               
               Cow position:chr7:13491792-13491957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr7:31074327-31074497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:230-399
               
               
               Cow position:chr7:49068591-49068762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-399
               
               
               Cow position:chr7:53433869-53433696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr7:65619187-65619353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:230-405
               
               
               Cow position:chr7:67763900-67764073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr7:11422849-11422684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:230-406
               
               
               Cow position:chr7:43853081-43853258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-407
               
               
               Cow position:chr7:34216450-34216280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:230-407
               
               
               Cow position:chr7:46823920-46823741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-407
               
               
               Cow position:chr7:53271255-53271083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-407
               
               
               Cow position:chr7:62603431-62603248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:230-411
               
               
               Cow position:chr7:9174007-9173824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-411
               
               
               Cow position:chr7:53996544-53996367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:230-412
               
               
               Cow position:chr7:12913742-12913926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-414
               
               
               Cow position:chr7:46963989-46963803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:230-415
               
               
               Cow position:chr7:18958293-18958478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:230-415
               
               
               Cow position:chr7:21228299-21228486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:230-415
               
               
               Cow position:chr7:46952282-46952095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr7:3304826-3304638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:230-417
               
               
               Cow position:chr7:8821718-8821535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 90

               
               
               Conread position:230-417
               
               
               Cow position:chr7:9068348-9068539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr7:12232296-12232107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr7:25464816-25464627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:230-417
               
               
               Cow position:chr7:32284171-32283983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 162

               
               
               Conread position:230-417
               
               
               Cow position:chr7:38084562-38084379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr7:41614731-41614920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-419
               
               
               Cow position:chr7:19329062-19329249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-421
               
               
               Cow position:chr7:53806562-53806766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-425
               
               
               Cow position:chr7:67099583-67099385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:230-428
               
               
               Cow position:chr7:61006147-61005946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-430
               
               
               Cow position:chr7:48376059-48375857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:230-431
               
               
               Cow position:chr7:9077561-9077764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:230-437
               
               
               Cow position:chr7:6271532-6271321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:230-438
               
               
               Cow position:chr7:8025597-8025392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:230-438
               
               
               Cow position:chr7:17782445-17782654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:230-442
               
               
               Cow position:chr7:4138514-4138721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):185, 118

               
               
               Conread position:230-442
               
               
               Cow position:chr7:11015946-11015717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr7:11960638-11960432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:230-442
               
               
               Cow position:chr7:19797679-19797893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr7:26871743-26871956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr7:30931736-30931938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr7:39131257-39131463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):189, 78

               
               
               Conread position:230-442
               
               
               Cow position:chr7:40305009-40305218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-442
               
               
               Cow position:chr7:41293502-41293711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:230-442
               
               
               Cow position:chr7:41729061-41729268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):189, 20

               
               
               Conread position:230-442
               
               
               Cow position:chr7:42432124-42431895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 56

               
               
               Conread position:230-442
               
               
               Cow position:chr7:58800417-58800204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:230-442
               
               
               Cow position:chr7:63300446-63300235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):83, 172

               
               
               Conread position:230-442
               
               
               Cow position:chr7:66894293-66894504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 67

               
               
               Conread position:230-444
               
               
               Cow position:chr7:68172910-68173130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-445
               
               
               Cow position:chr7:59438699-59438483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):92, 78

               
               
               Conread position:230-446
               
               
               Cow position:chr7:39838617-39838848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:230-453
               
               
               Cow position:chr7:5914481-5914257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:230-456
               
               
               Cow position:chr7:29474904-29474690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:230-467
               
               
               Cow position:chr7:3431116-3431359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):89, 125

               
               
               Conread position:230-485
               
               
               Cow position:chr7:6706549-6706285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:230-488
               
               
               Cow position:chr7:42335567-42335315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:230-490
               
               
               Cow position:chr7:31315548-31315294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):189, 73

               
               
               Conread position:230-492
               
               
               Cow position:chr7:17713216-17713493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:230-493
               
               
               Cow position:chr7:9175724-9175454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:230-493
               
               
               Cow position:chr7:34428826-34428553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:230-493
               
               
               Cow position:chr7:36248339-36248078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 76

               
               
               Conread position:230-493
               
               
               Cow position:chr7:63112530-63112797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 78

               
               
               Conread position:230-494
               
               
               Cow position:chr7:600562-600312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr7:4765086-4764821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 84

               
               
               Conread position:230-494
               
               
               Cow position:chr7:9781474-9781747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr7:10943297-10943582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr7:15533836-15534099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr7:18508298-18508562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):205, 59

               
               
               Conread position:230-494
               
               
               Cow position:chr7:25083932-25083672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 204

               
               
               Conread position:230-494
               
               
               Cow position:chr7:25786088-25785814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 67

               
               
               Conread position:230-494
               
               
               Cow position:chr7:29682201-29682476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:230-494
               
               
               Cow position:chr7:32774498-32774238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 172

               
               
               Conread position:230-494
               
               
               Cow position:chr7:32893992-32894272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):76, 246

               
               
               Conread position:230-494
               
               
               Cow position:chr7:37698055-37697774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr7:40425062-40425336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr7:40484570-40484299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:230-494
               
               
               Cow position:chr7:54054844-54054565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 65

               
               
               Conread position:230-494
               
               
               Cow position:chr7:59688783-59688515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):170, 37

               
               
               Conread position:230-494
               
               
               Cow position:chr7:60483185-60483449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:231-356
               
               
               Cow position:chr7:10442672-10442805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:231-360
               
               
               Cow position:chr7:10523569-10523697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:231-371
               
               
               Cow position:chr7:35430557-35430421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-381
               
               
               Cow position:chr7:14497529-14497378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:231-384
               
               
               Cow position:chr7:56838277-56838430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:231-391
               
               
               Cow position:chr7:5343534-5343695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:231-399
               
               
               Cow position:chr7:20180955-20181119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr7:32093499-32093329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:231-399
               
               
               Cow position:chr7:41122024-41122188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:231-406
               
               
               Cow position:chr7:64572814-64572983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-410
               
               
               Cow position:chr7:51020026-51019846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 80

               
               
               Conread position:231-414
               
               
               Cow position:chr7:28041748-28041563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 132

               
               
               Conread position:231-414
               
               
               Cow position:chr7:42460913-42460730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr7:55060516-55060325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:231-417
               
               
               Cow position:chr7:59149759-59149569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:231-438
               
               
               Cow position:chr7:7510605-7510814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):73, 191

               
               
               Conread position:231-441
               
               
               Cow position:chr7:38429471-38429675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-442
               
               
               Cow position:chr7:4893095-4892899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr7:56556907-56557112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):181, 83

               
               
               Conread position:231-490
               
               
               Cow position:chr7:53785743-53785998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):152, 79

               
               
               Conread position:231-490
               
               
               Cow position:chr7:66748286-66748543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 175

               
               
               Conread position:231-493
               
               
               Cow position:chr7:44454021-44454300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr7:4582484-4582750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:231-494
               
               
               Cow position:chr7:12494875-12495132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr7:25859956-25860217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):79, 179

               
               
               Conread position:231-494
               
               
               Cow position:chr7:36856781-36856517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):117, 87

               
               
               Conread position:231-494
               
               
               Cow position:chr7:49105957-49106224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr7:49417852-49417581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:231-496
               
               
               Cow position:chr7:20968670-20968406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 77

               
               
               Conread position:232-384
               
               
               Cow position:chr7:33805334-33805184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:232-386
               
               
               Cow position:chr7:24736828-24736675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):147, 85

               
               
               Conread position:232-392
               
               
               Cow position:chr7:60247884-60247739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:232-395
               
               
               Cow position:chr7:35793323-35793158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:232-397
               
               
               Cow position:chr7:23255997-23255835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr7:30536323-30536490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:232-399
               
               
               Cow position:chr7:46003099-46003257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr7:28584516-28584347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:232-408
               
               
               Cow position:chr7:4868701-4868532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 61

               
               
               Conread position:232-418
               
               
               Cow position:chr7:40344633-40344812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-424
               
               
               Cow position:chr7:40310814-40311008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:232-429
               
               
               Cow position:chr7:24022228-24022415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:232-430
               
               
               Cow position:chr7:39518746-39518555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):177, 31

               
               
               Conread position:232-438
               
               
               Cow position:chr7:6469871-6469660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-440
               
               
               Cow position:chr7:30277562-30277370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):187, 38

               
               
               Conread position:232-440
               
               
               Cow position:chr7:33104396-33104199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:232-442
               
               
               Cow position:chr7:6043892-6044102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):182, 82

               
               
               Conread position:232-442
               
               
               Cow position:chr7:11796658-11796867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-442
               
               
               Cow position:chr7:12488669-12488468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:232-442
               
               
               Cow position:chr7:20537600-20537402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:232-442
               
               
               Cow position:chr7:28563153-28563355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):187, 27

               
               
               Conread position:232-480
               
               
               Cow position:chr7:60121271-60121022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:232-488
               
               
               Cow position:chr7:31523791-31523534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 213

               
               
               Conread position:232-489
               
               
               Cow position:chr7:40263427-40263672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:232-490
               
               
               Cow position:chr7:36996603-36996352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:232-490
               
               
               Cow position:chr7:37497943-37498215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:232-493
               
               
               Cow position:chr7:50860241-50859985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:232-494
               
               
               Cow position:chr7:10392-10122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):187, 82

               
               
               Conread position:232-494
               
               
               Cow position:chr7:14536043-14536303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):212, 65

               
               
               Conread position:232-494
               
               
               Cow position:chr7:23679347-23679614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):179, 84

               
               
               Conread position:232-494
               
               
               Cow position:chr7:23762212-23761949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):187, 51

               
               
               Conread position:232-494
               
               
               Cow position:chr7:42593019-42593302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr7:50494237-50493969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:232-494
               
               
               Cow position:chr7:50565949-50566222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-494
               
               
               Cow position:chr7:60870171-60869927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):210, 82

               
               
               Conread position:232-496
               
               
               Cow position:chr7:20535117-20534847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 97

               
               
               Conread position:233-364
               
               
               Cow position:chr7:37062097-37061968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-382
               
               
               Cow position:chr7:40322852-40322710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-386
               
               
               Cow position:chr7:48385928-48385772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:233-390
               
               
               Cow position:chr7:2738981-2739143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:233-390
               
               
               Cow position:chr7:53000277-53000123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:233-393
               
               
               Cow position:chr7:35111784-35111618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:233-397
               
               
               Cow position:chr7:41869177-41869345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:233-398
               
               
               Cow position:chr7:48616121-48616295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:233-406
               
               
               Cow position:chr7:38357405-38357568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr7:6802023-6801841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:233-417
               
               
               Cow position:chr7:10438571-10438389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr7:57506542-57506720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:233-417
               
               
               Cow position:chr7:58330582-58330768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:233-422
               
               
               Cow position:chr7:25415641-25415450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:233-429
               
               
               Cow position:chr7:23671997-23671800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr7:168414-168631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr7:1761975-1761766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:233-443
               
               
               Cow position:chr7:58682975-58683180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):186, 35

               
               
               Conread position:233-456
               
               
               Cow position:chr7:37354403-37354624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:233-479
               
               
               Cow position:chr7:35088904-35088653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 209

               
               
               Conread position:233-490
               
               
               Cow position:chr7:48721661-48721921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):174, 107

               
               
               Conread position:233-493
               
               
               Cow position:chr7:37394543-37394289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr7:23636954-23636684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:233-494
               
               
               Cow position:chr7:40308273-40308538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 70

               
               
               Conread position:233-494
               
               
               Cow position:chr7:68051355-68051079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:233-494
               
               
               Cow position:chr7:69133202-69132930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:234-316
               
               
               Cow position:chr7:22651564-22651646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:73
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-355
               
               
               Cow position:chr7:12469094-12468971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-368
               
               
               Cow position:chr7:34098844-34098711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 83

               
               
               Conread position:234-387
               
               
               Cow position:chr7:40710499-40710349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):127, 72

               
               
               Conread position:234-399
               
               
               Cow position:chr7:63967940-63968115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr7:65695065-65695228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr7:8888537-8888364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:234-406
               
               
               Cow position:chr7:44942799-44942629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-406
               
               
               Cow position:chr7:65597381-65597554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:234-411
               
               
               Cow position:chr7:31049356-31049525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr7:535477-535655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr7:10559740-10559921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:234-417
               
               
               Cow position:chr7:43185031-43184846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 128

               
               
               Conread position:234-417
               
               
               Cow position:chr7:43450786-43450602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:234-417
               
               
               Cow position:chr7:47547648-47547470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr7:52591757-52591937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 151

               
               
               Conread position:234-425
               
               
               Cow position:chr7:27290253-27290444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 187

               
               
               Conread position:234-432
               
               
               Cow position:chr7:56880320-56880117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr7:43085120-43084911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:234-442
               
               
               Cow position:chr7:58967513-58967301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr7:65616013-65615803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:234-444
               
               
               Cow position:chr7:39099772-39099984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:234-445
               
               
               Cow position:chr7:3026474-3026687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:234-489
               
               
               Cow position:chr7:23819135-23818871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:234-492
               
               
               Cow position:chr7:55085909-55085636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:234-493
               
               
               Cow position:chr7:18544147-18544404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):185, 86

               
               
               Conread position:234-494
               
               
               Cow position:chr7:8089405-8089138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):150, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr7:9449426-9449673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):196, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr7:11176492-11176739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):185, 81

               
               
               Conread position:234-494
               
               
               Cow position:chr7:14482309-14482044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):185, 21

               
               
               Conread position:234-494
               
               
               Cow position:chr7:18856745-18857007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:234-494
               
               
               Cow position:chr7:28917344-28917065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):33, 257

               
               
               Conread position:234-494
               
               
               Cow position:chr7:34554489-34554240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):178, 39

               
               
               Conread position:234-494
               
               
               Cow position:chr7:43109294-43109553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:234-494
               
               
               Cow position:chr7:58301696-58301962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:235-327
               
               
               Cow position:chr7:9896507-9896599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-355
               
               
               Cow position:chr7:47047106-47047222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:235-371
               
               
               Cow position:chr7:14496378-14496515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:235-374
               
               
               Cow position:chr7:53983347-53983208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:235-380
               
               
               Cow position:chr7:42894701-42894547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:235-385
               
               
               Cow position:chr7:53791352-53791498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):122, 86

               
               
               Conread position:235-387
               
               
               Cow position:chr7:17880728-17880878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:235-389
               
               
               Cow position:chr7:19330411-19330564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:235-391
               
               
               Cow position:chr7:20469858-20469701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 109

               
               
               Conread position:235-392
               
               
               Cow position:chr7:64384870-64385026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-397
               
               
               Cow position:chr7:44574462-44574303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:235-399
               
               
               Cow position:chr7:28428512-28428358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-399
               
               
               Cow position:chr7:39444380-39444533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:235-405
               
               
               Cow position:chr7:48552868-48553043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:235-406
               
               
               Cow position:chr7:10945035-10944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:235-410
               
               
               Cow position:chr7:31885837-31885661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:235-411
               
               
               Cow position:chr7:11511961-11511791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:235-414
               
               
               Cow position:chr7:14191503-14191682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:235-417
               
               
               Cow position:chr7:21573813-21573632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:235-417
               
               
               Cow position:chr7:32900827-32900642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr7:33698195-33698016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:235-420
               
               
               Cow position:chr7:53221594-53221782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:235-429
               
               
               Cow position:chr7:53442492-53442686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:235-433
               
               
               Cow position:chr7:63772293-63772091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 85

               
               
               Conread position:235-434
               
               
               Cow position:chr7:65727265-65727467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:235-440
               
               
               Cow position:chr7:23491867-23491672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):174, 82

               
               
               Conread position:235-442
               
               
               Cow position:chr7:8289599-8289397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):122, 97

               
               
               Conread position:235-442
               
               
               Cow position:chr7:8878126-8877915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:235-442
               
               
               Cow position:chr7:9816242-9816033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:235-442
               
               
               Cow position:chr7:18247596-18247794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):184, 11

               
               
               Conread position:235-442
               
               
               Cow position:chr7:32324437-32324236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 38

               
               
               Conread position:235-444
               
               
               Cow position:chr7:249263-249470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:235-444
               
               
               Cow position:chr7:39150195-39149983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-480
               
               
               Cow position:chr7:32884396-32884153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:235-490
               
               
               Cow position:chr7:31694389-31694655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-490
               
               
               Cow position:chr7:61740284-61740543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):163, 88

               
               
               Conread position:235-491
               
               
               Cow position:chr7:27079868-27079607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):184, 93

               
               
               Conread position:235-494
               
               
               Cow position:chr7:3160039-3159792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-494
               
               
               Cow position:chr7:10081464-10081724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:235-494
               
               
               Cow position:chr7:10885140-10884867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr7:11444231-11443969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:235-494
               
               
               Cow position:chr7:14519800-14520063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:235-494
               
               
               Cow position:chr7:27063017-27062754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:235-494
               
               
               Cow position:chr7:38360993-38361254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-494
               
               
               Cow position:chr7:47931549-47931820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr7:48715107-48714829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr7:53763349-53763607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:235-496
               
               
               Cow position:chr7:23624423-23624691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:236-351
               
               
               Cow position:chr7:12342752-12342869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:236-387
               
               
               Cow position:chr7:32807688-32807539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):125, 67

               
               
               Conread position:236-416
               
               
               Cow position:chr7:28441416-28441240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:236-417
               
               
               Cow position:chr7:5906875-5906695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:236-438
               
               
               Cow position:chr7:7617019-7616815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:236-442
               
               
               Cow position:chr7:10448576-10448767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:236-494
               
               
               Cow position:chr7:46051901-46051632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:238-354
               
               
               Cow position:chr7:49192303-49192185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 98

               
               
               Conread position:238-385
               
               
               Cow position:chr7:49192923-49192782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:238-396
               
               
               Cow position:chr7:10441730-10441886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:238-398
               
               
               Cow position:chr7:39402448-39402289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:238-399
               
               
               Cow position:chr7:21316264-21316110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:238-399
               
               
               Cow position:chr7:58862637-58862805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:238-424
               
               
               Cow position:chr7:39021968-39022157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:238-442
               
               
               Cow position:chr7:53653234-53653018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:238-490
               
               
               Cow position:chr7:29505351-29505094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):181, 64

               
               
               Conread position:238-493
               
               
               Cow position:chr7:31094091-31094371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 142

               
               
               Conread position:238-494
               
               
               Cow position:chr7:9161431-9161690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):81, 212

               
               
               Conread position:238-494
               
               
               Cow position:chr7:33386155-33385899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):181, 29

               
               
               Conread position:238-494
               
               
               Cow position:chr7:36278552-36278271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:239-460
               
               
               Cow position:chr7:59184455-59184225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-487
               
               
               Cow position:chr7:63707081-63707327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:240-351
               
               
               Cow position:chr7:59503846-59503736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr7:35925809-35925666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:240-385
               
               
               Cow position:chr7:53702338-53702197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 66

               
               
               Conread position:240-387
               
               
               Cow position:chr7:9128819-9128967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:240-393
               
               
               Cow position:chr7:11019230-11019380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:240-396
               
               
               Cow position:chr7:23609618-23609459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr7:8810046-8809886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:240-397
               
               
               Cow position:chr7:12484539-12484380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr7:13606695-13606534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:240-397
               
               
               Cow position:chr7:39514472-39514314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:240-397
               
               
               Cow position:chr7:39516278-39516436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:240-397
               
               
               Cow position:chr7:43457434-43457598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:240-397
               
               
               Cow position:chr7:49941895-49942050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:240-397
               
               
               Cow position:chr7:53211447-53211300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr7:37651737-37651576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:240-399
               
               
               Cow position:chr7:58615501-58615344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:240-399
               
               
               Cow position:chr7:61984175-61984018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:240-406
               
               
               Cow position:chr7:25722435-25722594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:240-410
               
               
               Cow position:chr7:51039669-51039500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:240-411
               
               
               Cow position:chr7:14796144-14796328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr7:23552728-23552897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr7:11784808-11784979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr7:1355962-1356129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):160, 28

               
               
               Conread position:240-414
               
               
               Cow position:chr7:5992529-5992353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:240-414
               
               
               Cow position:chr7:51621628-51621460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):156, 63

               
               
               Conread position:240-417
               
               
               Cow position:chr7:41346792-41346972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-417
               
               
               Cow position:chr7:54367733-54367554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:240-423
               
               
               Cow position:chr7:25087479-25087301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:240-424
               
               
               Cow position:chr7:519288-519469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:240-441
               
               
               Cow position:chr7:38347609-38347812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:240-441
               
               
               Cow position:chr7:53579151-53579355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 142

               
               
               Conread position:240-442
               
               
               Cow position:chr7:62497816-62498014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):142, 50

               
               
               Conread position:240-443
               
               
               Cow position:chr7:18464258-18464450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 109

               
               
               Conread position:240-467
               
               
               Cow position:chr7:10414903-10415128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:240-490
               
               
               Cow position:chr7:25263607-25263356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:240-490
               
               
               Cow position:chr7:36665564-36665313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:240-490
               
               
               Cow position:chr7:43940725-43940476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:240-492
               
               
               Cow position:chr7:15548267-15548023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):176, 72

               
               
               Conread position:240-492
               
               
               Cow position:chr7:29300540-29300791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):179, 6

               
               
               Conread position:240-493
               
               
               Cow position:chr7:32692790-32693050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:240-493
               
               
               Cow position:chr7:39093686-39093949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:240-494
               
               
               Cow position:chr7:1720728-1720990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:240-494
               
               
               Cow position:chr7:5199321-5199573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):179, 53

               
               
               Conread position:240-494
               
               
               Cow position:chr7:8658751-8658491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr7:10599455-10599705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):146, 69

               
               
               Conread position:240-494
               
               
               Cow position:chr7:11714205-11714449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):187, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr7:11958206-11958458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):179, 21

               
               
               Conread position:240-494
               
               
               Cow position:chr7:18388157-18388421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 247

               
               
               Conread position:240-494
               
               
               Cow position:chr7:20168783-20168525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr7:23568491-23568761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:240-494
               
               
               Cow position:chr7:24220888-24220646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr7:25195787-25195520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:240-494
               
               
               Cow position:chr7:29027359-29027127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):175, 27

               
               
               Conread position:240-494
               
               
               Cow position:chr7:30276975-30276714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):67, 251

               
               
               Conread position:240-494
               
               
               Cow position:chr7:32946303-32946045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 72

               
               
               Conread position:240-494
               
               
               Cow position:chr7:36534263-36533997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:240-494
               
               
               Cow position:chr7:43711449-43711194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr7:47513449-47513710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:240-494
               
               
               Cow position:chr7:49751366-49751104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:240-494
               
               
               Cow position:chr7:50065880-50066141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr7:52681088-52680820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:240-494
               
               
               Cow position:chr7:63121178-63121441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:240-494
               
               
               Cow position:chr7:64135230-64135487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:240-496
               
               
               Cow position:chr7:14174206-14174441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:240-496
               
               
               Cow position:chr7:31504086-31503830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:241-351
               
               
               Cow position:chr7:9092517-9092412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:241-360
               
               
               Cow position:chr7:8728547-8728668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:241-360
               
               
               Cow position:chr7:52838136-52838257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:241-386
               
               
               Cow position:chr7:7786770-7786919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:241-392
               
               
               Cow position:chr7:40061212-40061364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:241-397
               
               
               Cow position:chr7:68898240-68898082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:241-406
               
               
               Cow position:chr7:15951658-15951819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):114, 73

               
               
               Conread position:241-413
               
               
               Cow position:chr7:20411287-20411459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:241-414
               
               
               Cow position:chr7:50866928-50867101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 6

               
               
               Conread position:241-414
               
               
               Cow position:chr7:63983296-63983124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:241-417
               
               
               Cow position:chr7:8292906-8293091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:241-417
               
               
               Cow position:chr7:10945586-10945408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:241-430
               
               
               Cow position:chr7:44094477-44094672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 189

               
               
               Conread position:241-442
               
               
               Cow position:chr7:7535771-7535575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:241-444
               
               
               Cow position:chr7:52781722-52781933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:241-472
               
               
               Cow position:chr7:36284933-36284699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):143, 6

               
               
               Conread position:241-490
               
               
               Cow position:chr7:43484297-43484557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:241-492
               
               
               Cow position:chr7:31497937-31497701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):210, 11

               
               
               Conread position:241-493
               
               
               Cow position:chr7:13067396-13067139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:241-493
               
               
               Cow position:chr7:48667638-48667390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):159, 13

               
               
               Conread position:241-494
               
               
               Cow position:chr7:17750605-17750860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 225

               
               
               Conread position:241-494
               
               
               Cow position:chr7:23456588-23456846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:241-494
               
               
               Cow position:chr7:26263418-26263682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:241-494
               
               
               Cow position:chr7:41315189-41315459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):81, 166

               
               
               Conread position:241-494
               
               
               Cow position:chr7:46818264-46818520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 24

               
               
               Conread position:241-494
               
               
               Cow position:chr7:56820352-56820594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):175, 60

               
               
               Conread position:241-496
               
               
               Cow position:chr7:30017286-30017543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):159, 63

               
               
               Conread position:241-496
               
               
               Cow position:chr7:47698254-47697985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 187

               
               
               Conread position:242-407
               
               
               Cow position:chr7:42943540-42943380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr7:49736304-49736129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:242-441
               
               
               Cow position:chr7:33810941-33810746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):177, 31

               
               
               Conread position:242-443
               
               
               Cow position:chr7:9660504-9660311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):177, 28

               
               
               Conread position:242-493
               
               
               Cow position:chr7:54013613-54013347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:242-494
               
               
               Cow position:chr7:17951037-17950816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr7:63749247-63749501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:244-407
               
               
               Cow position:chr7:19210038-19210204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:244-411
               
               
               Cow position:chr7:34464587-34464425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:244-494
               
               
               Cow position:chr7:428554-428805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):167, 73

               
               
               Conread position:244-494
               
               
               Cow position:chr7:21008689-21008963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 264

               
               
               Conread position:245-442
               
               
               Cow position:chr7:15755212-15755411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:245-442
               
               
               Cow position:chr7:47776096-47775896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:245-444
               
               
               Cow position:chr7:26791745-26791540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:246-496
               
               
               Cow position:chr7:53382412-53382176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):204, 59

               
               
               Conread position:247-386
               
               
               Cow position:chr7:35651496-35651638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:247-399
               
               
               Cow position:chr7:11946110-11945962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:247-494
               
               
               Cow position:chr7:33279758-33280016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:248-399
               
               
               Cow position:chr7:40336467-40336315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:248-407
               
               
               Cow position:chr7:7581636-7581794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:248-410
               
               
               Cow position:chr7:8032671-8032511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:248-410
               
               
               Cow position:chr7:32920370-32920533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:248-414
               
               
               Cow position:chr7:32813675-32813507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:248-417
               
               
               Cow position:chr7:15650614-15650786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:248-417
               
               
               Cow position:chr7:44993829-44993659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:248-420
               
               
               Cow position:chr7:50203428-50203257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:248-424
               
               
               Cow position:chr7:6781626-6781441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:248-424
               
               
               Cow position:chr7:54090716-54090545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:248-442
               
               
               Cow position:chr7:3336332-3336515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:248-442
               
               
               Cow position:chr7:48563254-48563439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:248-445
               
               
               Cow position:chr7:57659932-57660133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:248-490
               
               
               Cow position:chr7:14317168-14316922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 71

               
               
               Conread position:248-493
               
               
               Cow position:chr7:17966897-17967147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:248-494
               
               
               Cow position:chr7:53202944-53202687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:249-398
               
               
               Cow position:chr7:27031045-27031186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:249-410
               
               
               Cow position:chr7:35779967-35779810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:249-414
               
               
               Cow position:chr7:15653701-15653870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:249-414
               
               
               Cow position:chr7:17991106-17990946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:249-442
               
               
               Cow position:chr7:37023162-37022963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:250-410
               
               
               Cow position:chr7:8235109-8234947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:250-410
               
               
               Cow position:chr7:53862735-53862580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:250-417
               
               
               Cow position:chr7:4060499-4060326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:250-494
               
               
               Cow position:chr7:914275-914022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:250-494
               
               
               Cow position:chr7:11549895-11549642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:251-427
               
               
               Cow position:chr7:11884057-11884231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):168, 60

               
               
               Conread position:253-429
               
               
               Cow position:chr7:35754899-35754722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:253-494
               
               
               Cow position:chr7:59168475-59168249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:255-402
               
               
               Cow position:chr7:5401854-5401717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:256-399
               
               
               Cow position:chr7:23823277-23823420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-496
               
               
               Cow position:chr7:39904309-39904068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 60

               
               
               Conread position:259-404
               
               
               Cow position:chr7:39017459-39017599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:260-417
               
               
               Cow position:chr7:16219668-16219825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:260-496
               
               
               Cow position:chr7:26737124-26737364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):45, 217

               
               
               Conread position:262-491
               
               
               Cow position:chr7:51910333-51910108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):180, 57

               
               
               Conread position:264-425
               
               
               Cow position:chr7:53782606-53782766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:265-424
               
               
               Cow position:chr7:65325540-65325701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:267-483
               
               
               Cow position:chr7:29279811-29280027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):175, 7

               
               
               Conread position:267-494
               
               
               Cow position:chr7:9146859-9146621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:268-399
               
               
               Cow position:chr7:68773968-68773843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:268-494
               
               
               Cow position:chr7:50772522-50772756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:269-417
               
               
               Cow position:chr7:12995888-12995737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:270-494
               
               
               Cow position:chr7:49903988-49903747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:272-494
               
               
               Cow position:chr7:56886307-56886532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):147, 20

               
               
               Conread position:273-417
               
               
               Cow position:chr7:34005165-34005022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:273-431
               
               
               Cow position:chr7:32222267-32222111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):146, 42

               
               
               Conread position:274-494
               
               
               Cow position:chr7:48406294-48406518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:276-494
               
               
               Cow position:chr7:42637167-42636958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:281-397
               
               
               Cow position:chr7:39639709-39639824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:281-417
               
               
               Cow position:chr7:40710323-40710189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:281-494
               
               
               Cow position:chr7:18188040-18188250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):144, 30

               
               
               Conread position:281-494
               
               
               Cow position:chr7:52517531-52517310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:283-490
               
               
               Cow position:chr7:8090221-8090424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:285-390
               
               
               Cow position:chr7:15861505-15861400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:286-442
               
               
               Cow position:chr7:57066610-57066773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 122

               
               
               Conread position:286-493
               
               
               Cow position:chr7:21565377-21565584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):157, 37

               
               
               Conread position:288-492
               
               
               Cow position:chr7:28544358-28544155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:293-441
               
               
               Cow position:chr7:36570048-36569898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:295-456
               
               
               Cow position:chr7:12658835-12658992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):129, 141

               
               
               Conread position:296-493
               
               
               Cow position:chr7:34412093-34412295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:299-407
               
               
               Cow position:chr7:34974488-34974380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:301-494
               
               
               Cow position:chr7:10381979-10381779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:302-439
               
               
               Cow position:chr7:64364352-64364490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-468
               
               
               Cow position:chr7:3256169-3256338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):117, 154

               
               
               Conread position:302-469
               
               
               Cow position:chr7:40074859-40074687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:302-487
               
               
               Cow position:chr7:14765953-14766137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:302-487
               
               
               Cow position:chr7:43307351-43307153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-490
               
               
               Cow position:chr7:58923572-58923379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:302-494
               
               
               Cow position:chr7:17816923-17816727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:302-494
               
               
               Cow position:chr7:24461127-24460934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 163

               
               
               Conread position:302-494
               
               
               Cow position:chr7:25867324-25867511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr7:34422096-34422291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:302-494
               
               
               Cow position:chr7:38082332-38082133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr7:40067838-40067637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:302-494
               
               
               Cow position:chr7:44986829-44986629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:303-430
               
               
               Cow position:chr7:23170008-23169880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:303-469
               
               
               Cow position:chr7:23089972-23090139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:303-494
               
               
               Cow position:chr7:27283849-27283660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):142, 105

               
               
               Conread position:304-442
               
               
               Cow position:chr7:57518250-57518112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:304-494
               
               
               Cow position:chr7:32915289-32915087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:305-473
               
               
               Cow position:chr7:2894899-2894723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:305-493
               
               
               Cow position:chr7:598414-598220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:305-494
               
               
               Cow position:chr7:5853521-5853335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 58

               
               
               Conread position:305-494
               
               
               Cow position:chr7:23646786-23646584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr7:25511951-25512145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr7:38060255-38060451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):112, 162

               
               
               Conread position:307-494
               
               
               Cow position:chr7:45331709-45331516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):105, 116

               
               
               Conread position:307-494
               
               
               Cow position:chr7:49405456-49405267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:308-494
               
               
               Cow position:chr7:9800525-9800331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:308-494
               
               
               Cow position:chr7:58363101-58362928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):140, 64

               
               
               Conread position:311-439
               
               
               Cow position:chr7:13096146-13096017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:312-494
               
               
               Cow position:chr7:23936277-23936086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:313-496
               
               
               Cow position:chr7:29122064-29121879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:314-492
               
               
               Cow position:chr7:39325890-39325714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 86

               
               
               Conread position:318-494
               
               
               Cow position:chr7:65122492-65122320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):124, 88

               
               
               Conread position:319-494
               
               
               Cow position:chr7:40894701-40894518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:320-469
               
               
               Cow position:chr7:29863907-29863760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:322-494
               
               
               Cow position:chr7:14632521-14632352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:324-494
               
               
               Cow position:chr7:18288116-18288291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 76

               
               
               Conread position:324-494
               
               
               Cow position:chr7:26631658-26631836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:324-494
               
               
               Cow position:chr7:30816138-30816311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 144

               
               
               Conread position:324-494
               
               
               Cow position:chr7:37362030-37361858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:324-494
               
               
               Cow position:chr7:58350812-58350981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):126, 89

               
               
               Conread position:326-492
               
               
               Cow position:chr7:39450997-39451172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 155

               
               
               Conread position:328-492
               
               
               Cow position:chr7:13133553-13133721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:329-494
               
               
               Cow position:chr7:10759561-10759737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:329-494
               
               
               Cow position:chr7:43297059-43296884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:331-442
               
               
               Cow position:chr7:49630324-49630212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:331-494
               
               
               Cow position:chr7:48243820-48243650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:335-494
               
               
               Cow position:chr7:35245447-35245613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:204-490
               
               
               Cow position:chr8:8323623-8323919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 99

               
               
               Conread position:210-494
               
               
               Cow position:chr8:55247357-55247647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:212-409
               
               
               Cow position:chr8:35936999-35936803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:214-383
               
               
               Cow position:chr8:607889-608057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:214-490
               
               
               Cow position:chr8:19995499-19995782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:214-494
               
               
               Cow position:chr8:38479173-38478880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 149

               
               
               Conread position:217-494
               
               
               Cow position:chr8:59056074-59056357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:218-485
               
               
               Cow position:chr8:11864178-11863906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:219-424
               
               
               Cow position:chr8:47057434-47057642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:219-492
               
               
               Cow position:chr8:32620751-32621044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:220-392
               
               
               Cow position:chr8:20340429-20340605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:220-487
               
               
               Cow position:chr8:9655798-9655528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:221-356
               
               
               Cow position:chr8:33399869-33399999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:221-382
               
               
               Cow position:chr8:53927790-53927951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:221-493
               
               
               Cow position:chr8:61537621-61537898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:221-494
               
               
               Cow position:chr8:45287057-45287343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:222-366
               
               
               Cow position:chr8:48437008-48437160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:222-379
               
               
               Cow position:chr8:56823698-56823845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:222-410
               
               
               Cow position:chr8:23608662-23608852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:222-414
               
               
               Cow position:chr8:16500742-16500929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):153, 22

               
               
               Conread position:222-441
               
               
               Cow position:chr8:33807501-33807712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:222-494
               
               
               Cow position:chr8:37334397-37334118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 105

               
               
               Conread position:222-494
               
               
               Cow position:chr8:54177489-54177767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:222-496
               
               
               Cow position:chr8:43163487-43163760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:223-409
               
               
               Cow position:chr8:37298701-37298515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 102

               
               
               Conread position:223-441
               
               
               Cow position:chr8:2375795-2376016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 140

               
               
               Conread position:223-494
               
               
               Cow position:chr8:948751-948484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:223-494
               
               
               Cow position:chr8:36375298-36375570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:223-494
               
               
               Cow position:chr8:58058964-58058687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):193, 42

               
               
               Conread position:224-411
               
               
               Cow position:chr8:19010602-19010801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:224-417
               
               
               Cow position:chr8:3057065-3056870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):91, 135

               
               
               Conread position:224-427
               
               
               Cow position:chr8:18870104-18869901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:225-343
               
               
               Cow position:chr8:53642173-53642292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:225-390
               
               
               Cow position:chr8:3966533-3966701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:225-397
               
               
               Cow position:chr8:57389015-57388847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:225-406
               
               
               Cow position:chr8:13922859-13922679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:225-414
               
               
               Cow position:chr8:5877862-5877676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:225-417
               
               
               Cow position:chr8:47969042-47969250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:225-440
               
               
               Cow position:chr8:8667963-8668181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:225-442
               
               
               Cow position:chr8:28378544-28378763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:225-442
               
               
               Cow position:chr8:53492548-53492338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):194, 81

               
               
               Conread position:225-493
               
               
               Cow position:chr8:6232678-6232951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:225-495
               
               
               Cow position:chr8:11612774-11612493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:225-496
               
               
               Cow position:chr8:20033696-20033971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:226-410
               
               
               Cow position:chr8:6478063-6477884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:226-437
               
               
               Cow position:chr8:39190786-39190567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:226-492
               
               
               Cow position:chr8:31985478-31985209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:227-320
               
               
               Cow position:chr8:53719735-53719829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:227-347
               
               
               Cow position:chr8:27917864-27917744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:227-355
               
               
               Cow position:chr8:31249745-31249620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:227-367
               
               
               Cow position:chr8:61541806-61541666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-383
               
               
               Cow position:chr8:41466201-41466363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:227-385
               
               
               Cow position:chr8:48210753-48210913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:227-386
               
               
               Cow position:chr8:2968798-2968637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr8:51511638-51511799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:227-389
               
               
               Cow position:chr8:55961448-55961610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:227-392
               
               
               Cow position:chr8:46543900-46544069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:227-397
               
               
               Cow position:chr8:32932286-32932121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:227-398
               
               
               Cow position:chr8:10293219-10293389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):158, 38

               
               
               Conread position:227-399
               
               
               Cow position:chr8:633452-633627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:227-399
               
               
               Cow position:chr8:3423282-3423456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:227-399
               
               
               Cow position:chr8:36385341-36385511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr8:39556350-39556177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 123

               
               
               Conread position:227-399
               
               
               Cow position:chr8:43104065-43104246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:227-412
               
               
               Cow position:chr8:24488701-24488511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:227-413
               
               
               Cow position:chr8:29173426-29173243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:227-414
               
               
               Cow position:chr8:38852312-38852121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 63

               
               
               Conread position:227-414
               
               
               Cow position:chr8:44126692-44126502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 137

               
               
               Conread position:227-417
               
               
               Cow position:chr8:522206-522398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:227-417
               
               
               Cow position:chr8:2288869-2289061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr8:8509914-8509723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:227-417
               
               
               Cow position:chr8:8766914-8767108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 122

               
               
               Conread position:227-417
               
               
               Cow position:chr8:35827583-35827774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:227-417
               
               
               Cow position:chr8:53964250-53964427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:227-424
               
               
               Cow position:chr8:48450263-48450466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:227-425
               
               
               Cow position:chr8:35534068-35534261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:227-430
               
               
               Cow position:chr8:61848508-61848711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:227-431
               
               
               Cow position:chr8:6675413-6675212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:227-431
               
               
               Cow position:chr8:8715008-8714809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 66

               
               
               Conread position:227-431
               
               
               Cow position:chr8:57397307-57397504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:227-438
               
               
               Cow position:chr8:31265693-31265898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):168, 16

               
               
               Conread position:227-438
               
               
               Cow position:chr8:37860410-37860193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 135

               
               
               Conread position:227-440
               
               
               Cow position:chr8:537692-537907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:227-442
               
               
               Cow position:chr8:1804845-1804632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:227-442
               
               
               Cow position:chr8:9942302-9942521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:227-442
               
               
               Cow position:chr8:39590456-39590238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:227-442
               
               
               Cow position:chr8:43439825-43439616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:227-442
               
               
               Cow position:chr8:55348538-55348341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):184, 41

               
               
               Conread position:227-443
               
               
               Cow position:chr8:1188132-1187924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-443
               
               
               Cow position:chr8:48524750-48524951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-445
               
               
               Cow position:chr8:518097-517898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:227-455
               
               
               Cow position:chr8:23110829-23111071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):94, 236

               
               
               Conread position:227-460
               
               
               Cow position:chr8:3887550-3887319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:227-464
               
               
               Cow position:chr8:27662077-27661845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):134, 87

               
               
               Conread position:227-464
               
               
               Cow position:chr8:53965246-53965499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:227-464
               
               
               Cow position:chr8:58636950-58636726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):192, 74

               
               
               Conread position:227-467
               
               
               Cow position:chr8:54062116-54061879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 75

               
               
               Conread position:227-472
               
               
               Cow position:chr8:60339709-60339943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):192, 80

               
               
               Conread position:227-485
               
               
               Cow position:chr8:39896453-39896204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-492
               
               
               Cow position:chr8:19716897-19717153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):196, 83

               
               
               Conread position:227-492
               
               
               Cow position:chr8:33640583-33640310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:227-492
               
               
               Cow position:chr8:55502795-55502539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:227-493
               
               
               Cow position:chr8:9402146-9401870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:227-493
               
               
               Cow position:chr8:21911862-21911585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:227-493
               
               
               Cow position:chr8:26626090-26625819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:227-493
               
               
               Cow position:chr8:57219010-57218752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):214, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr8:2904190-2904471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 251

               
               
               Conread position:227-494
               
               
               Cow position:chr8:5437979-5437707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:227-494
               
               
               Cow position:chr8:6661187-6661464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr8:11277886-11278161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:227-494
               
               
               Cow position:chr8:21220374-21220097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:227-494
               
               
               Cow position:chr8:23018297-23018567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:227-494
               
               
               Cow position:chr8:23585742-23586008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:227-494
               
               
               Cow position:chr8:35185941-35185689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 78

               
               
               Conread position:227-494
               
               
               Cow position:chr8:35972068-35971797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr8:36531380-36531657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr8:46874771-46874500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:227-494
               
               
               Cow position:chr8:55122217-55122503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 107

               
               
               Conread position:227-494
               
               
               Cow position:chr8:55716971-55716698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:227-494
               
               
               Cow position:chr8:55885189-55884917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 13

               
               
               Conread position:227-494
               
               
               Cow position:chr8:60455396-60455135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):213, 79

               
               
               Conread position:228-335
               
               
               Cow position:chr8:663447-663552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:228-347
               
               
               Cow position:chr8:39116351-39116229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:228-399
               
               
               Cow position:chr8:54032092-54031927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:228-404
               
               
               Cow position:chr8:46616603-46616430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr8:53251479-53251699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 73

               
               
               Conread position:228-464
               
               
               Cow position:chr8:38639452-38639215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:228-490
               
               
               Cow position:chr8:55096090-55095829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 160

               
               
               Conread position:228-492
               
               
               Cow position:chr8:28229258-28229515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:228-492
               
               
               Cow position:chr8:58393779-58393509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:228-493
               
               
               Cow position:chr8:19860457-19860712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 82

               
               
               Conread position:228-494
               
               
               Cow position:chr8:18729001-18728731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):191, 78

               
               
               Conread position:228-494
               
               
               Cow position:chr8:26315287-26315548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):191, 15

               
               
               Conread position:228-494
               
               
               Cow position:chr8:58520504-58520238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:229-379
               
               
               Cow position:chr8:59092666-59092817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:229-410
               
               
               Cow position:chr8:30868512-30868695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:229-410
               
               
               Cow position:chr8:39898903-39898734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:229-442
               
               
               Cow position:chr8:4992767-4992557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:229-494
               
               
               Cow position:chr8:4500705-4500438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:229-494
               
               
               Cow position:chr8:4525293-4525030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):190, 63

               
               
               Conread position:229-494
               
               
               Cow position:chr8:19979869-19980136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:229-494
               
               
               Cow position:chr8:20657163-20657417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):190, 67

               
               
               Conread position:229-494
               
               
               Cow position:chr8:29958615-29958348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:229-494
               
               
               Cow position:chr8:39181557-39181820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:230-365
               
               
               Cow position:chr8:42758501-42758638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr8:10194283-10194138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:230-374
               
               
               Cow position:chr8:46684640-46684503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-375
               
               
               Cow position:chr8:20112650-20112503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:230-378
               
               
               Cow position:chr8:25083393-25083243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 118

               
               
               Conread position:230-378
               
               
               Cow position:chr8:47667760-47667908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:230-380
               
               
               Cow position:chr8:61277948-61278095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-391
               
               
               Cow position:chr8:12105765-12105603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:230-392
               
               
               Cow position:chr8:33664114-33663958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 71

               
               
               Conread position:230-397
               
               
               Cow position:chr8:38078677-38078523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr8:55539059-55538908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr8:21826525-21826686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:230-398
               
               
               Cow position:chr8:36054382-36054211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:230-398
               
               
               Cow position:chr8:36860682-36860519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr8:20926410-20926583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr8:39968065-39968234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr8:48182720-48182550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:230-399
               
               
               Cow position:chr8:55214465-55214296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-412
               
               
               Cow position:chr8:47707305-47707479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-412
               
               
               Cow position:chr8:53641638-53641450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:230-414
               
               
               Cow position:chr8:22274079-22273896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:230-414
               
               
               Cow position:chr8:36034749-36034935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr8:44674901-44674715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr8:51160351-51160530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:230-417
               
               
               Cow position:chr8:6005892-6006081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:8112955-8112767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:230-417
               
               
               Cow position:chr8:20327636-20327820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 127

               
               
               Conread position:230-417
               
               
               Cow position:chr8:20897564-20897375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:21600669-21600476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:23652885-23653071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:230-417
               
               
               Cow position:chr8:24419070-24419247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:28506740-28506913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:230-417
               
               
               Cow position:chr8:34035889-34035707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:230-417
               
               
               Cow position:chr8:34820099-34820288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:35456623-35456812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:35816902-35817089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:230-417
               
               
               Cow position:chr8:39066445-39066251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr8:39350570-39350758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:230-426
               
               
               Cow position:chr8:21858494-21858698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr8:2762637-2762425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr8:5937641-5937421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr8:20582469-20582684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-442
               
               
               Cow position:chr8:21223866-21224081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-442
               
               
               Cow position:chr8:24406426-24406637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:230-442
               
               
               Cow position:chr8:26009100-26008885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 133

               
               
               Conread position:230-442
               
               
               Cow position:chr8:29029862-29030082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:230-442
               
               
               Cow position:chr8:47410298-47410086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):106, 87

               
               
               Conread position:230-443
               
               
               Cow position:chr8:38811517-38811306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:230-445
               
               
               Cow position:chr8:5499308-5499087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 137

               
               
               Conread position:230-466
               
               
               Cow position:chr8:32854619-32854848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-485
               
               
               Cow position:chr8:10261896-10262158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:230-487
               
               
               Cow position:chr8:32133480-32133220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):186, 74

               
               
               Conread position:230-487
               
               
               Cow position:chr8:37559340-37559083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:230-490
               
               
               Cow position:chr8:12796041-12795773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:230-490
               
               
               Cow position:chr8:61128484-61128746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:230-492
               
               
               Cow position:chr8:1304123-1303853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:230-492
               
               
               Cow position:chr8:38358635-38358377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 206

               
               
               Conread position:230-493
               
               
               Cow position:chr8:15426969-15426699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:230-494
               
               
               Cow position:chr8:642375-642629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):189, 31

               
               
               Conread position:230-494
               
               
               Cow position:chr8:4203635-4203908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr8:4796962-4796713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr8:6616564-6616846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:230-494
               
               
               Cow position:chr8:12058940-12058668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:230-494
               
               
               Cow position:chr8:13454405-13454677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:230-494
               
               
               Cow position:chr8:15694263-15694526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):148, 43

               
               
               Conread position:230-494
               
               
               Cow position:chr8:16957827-16957575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):189, 73

               
               
               Conread position:230-494
               
               
               Cow position:chr8:17199214-17199487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:230-494
               
               
               Cow position:chr8:18170784-18171072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr8:19204227-19204502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr8:19284719-19284448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:230-494
               
               
               Cow position:chr8:20212282-20212557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr8:20783046-20783318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):77, 190

               
               
               Conread position:230-494
               
               
               Cow position:chr8:21222847-21222585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 212

               
               
               Conread position:230-494
               
               
               Cow position:chr8:29026443-29026688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):186, 33

               
               
               Conread position:230-494
               
               
               Cow position:chr8:34769714-34769451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:230-494
               
               
               Cow position:chr8:35563565-35563277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:230-494
               
               
               Cow position:chr8:43112635-43112898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-494
               
               
               Cow position:chr8:48776036-48775765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:230-494
               
               
               Cow position:chr8:52197240-52197513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:230-496
               
               
               Cow position:chr8:5894143-5893887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):195, 38

               
               
               Conread position:231-333
               
               
               Cow position:chr8:31236599-31236703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:231-394
               
               
               Cow position:chr8:45148151-45147996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 83

               
               
               Conread position:231-399
               
               
               Cow position:chr8:55058924-55058748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:231-411
               
               
               Cow position:chr8:5476305-5476472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:231-414
               
               
               Cow position:chr8:57942959-57943148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 136

               
               
               Conread position:231-417
               
               
               Cow position:chr8:38696179-38696365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:231-417
               
               
               Cow position:chr8:47679720-47679542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-417
               
               
               Cow position:chr8:54306568-54306385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr8:19616520-19616320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):188, 30

               
               
               Conread position:231-442
               
               
               Cow position:chr8:37443738-37443536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:231-445
               
               
               Cow position:chr8:37275972-37275760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:231-462
               
               
               Cow position:chr8:1177672-1177899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):188, 67

               
               
               Conread position:231-462
               
               
               Cow position:chr8:43940682-43940913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 131

               
               
               Conread position:231-463
               
               
               Cow position:chr8:24905693-24905447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:231-469
               
               
               Cow position:chr8:12778683-12778911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:231-487
               
               
               Cow position:chr8:53230226-53229977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:231-493
               
               
               Cow position:chr8:55974600-55974869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:231-493
               
               
               Cow position:chr8:61845334-61845610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 68

               
               
               Conread position:231-494
               
               
               Cow position:chr8:834628-834363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):188, 61

               
               
               Conread position:231-494
               
               
               Cow position:chr8:935921-935654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 126

               
               
               Conread position:231-494
               
               
               Cow position:chr8:6224228-6224490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 12

               
               
               Conread position:231-494
               
               
               Cow position:chr8:6271557-6271289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 92

               
               
               Conread position:231-494
               
               
               Cow position:chr8:20079875-20080122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:231-494
               
               
               Cow position:chr8:23179316-23179598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:231-494
               
               
               Cow position:chr8:24328632-24328908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr8:37347234-37347512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:231-494
               
               
               Cow position:chr8:40280902-40280630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):81, 173

               
               
               Conread position:231-494
               
               
               Cow position:chr8:46082379-46082113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:231-494
               
               
               Cow position:chr8:53552884-53552624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):185, 16

               
               
               Conread position:231-494
               
               
               Cow position:chr8:61157016-61157291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):188, 77

               
               
               Conread position:232-351
               
               
               Cow position:chr8:57041418-57041535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-370
               
               
               Cow position:chr8:5516041-5515907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:232-382
               
               
               Cow position:chr8:32243810-32243661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:232-392
               
               
               Cow position:chr8:20617501-20617335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):10, 119

               
               
               Conread position:232-398
               
               
               Cow position:chr8:2638670-2638831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:232-398
               
               
               Cow position:chr8:16053904-16053742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr8:21069750-21069927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr8:55064149-55063982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:232-404
               
               
               Cow position:chr8:56986454-56986283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:232-406
               
               
               Cow position:chr8:6795604-6795421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:232-410
               
               
               Cow position:chr8:38665753-38665575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:232-414
               
               
               Cow position:chr8:60668306-60668478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 75

               
               
               Conread position:232-417
               
               
               Cow position:chr8:6535893-6536077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:232-417
               
               
               Cow position:chr8:35452787-35452604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr8:53624609-53624800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 128

               
               
               Conread position:232-423
               
               
               Cow position:chr8:50682316-50682126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-425
               
               
               Cow position:chr8:37172843-37173038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 70

               
               
               Conread position:232-427
               
               
               Cow position:chr8:5671941-5672135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:232-429
               
               
               Cow position:chr8:58081884-58082087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 165

               
               
               Conread position:232-442
               
               
               Cow position:chr8:18730672-18730451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:232-442
               
               
               Cow position:chr8:55070927-55070721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:232-465
               
               
               Cow position:chr8:20910862-20911094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:232-486
               
               
               Cow position:chr8:8986715-8986993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:232-489
               
               
               Cow position:chr8:5467869-5468142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 248

               
               
               Conread position:232-493
               
               
               Cow position:chr8:33406646-33406903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:232-494
               
               
               Cow position:chr8:19698854-19698591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:232-494
               
               
               Cow position:chr8:24371499-24371771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:232-494
               
               
               Cow position:chr8:27954938-27955209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:232-494
               
               
               Cow position:chr8:31297480-31297213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:232-494
               
               
               Cow position:chr8:38780935-38780655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:232-494
               
               
               Cow position:chr8:38894233-38893954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:232-494
               
               
               Cow position:chr8:41721977-41722238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:232-494
               
               
               Cow position:chr8:42112602-42112863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:232-494
               
               
               Cow position:chr8:46235920-46235647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 175

               
               
               Conread position:232-494
               
               
               Cow position:chr8:54303226-54302974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:233-355
               
               
               Cow position:chr8:45352034-45352159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr8:20850147-20850281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-389
               
               
               Cow position:chr8:4897169-4897011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:233-399
               
               
               Cow position:chr8:3445884-3446049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):117, 79

               
               
               Conread position:233-399
               
               
               Cow position:chr8:11135022-11135195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:233-407
               
               
               Cow position:chr8:38790170-38789995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:233-414
               
               
               Cow position:chr8:3662330-3662519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 136

               
               
               Conread position:233-418
               
               
               Cow position:chr8:31902476-31902658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):177, 84

               
               
               Conread position:233-420
               
               
               Cow position:chr8:50282092-50281904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 126

               
               
               Conread position:233-425
               
               
               Cow position:chr8:49543094-49542903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:233-442
               
               
               Cow position:chr8:47135810-47136007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):186, 53

               
               
               Conread position:233-442
               
               
               Cow position:chr8:55900812-55901018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:233-454
               
               
               Cow position:chr8:60595075-60594845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:233-478
               
               
               Cow position:chr8:46743102-46743353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):211, 182

               
               
               Conread position:233-493
               
               
               Cow position:chr8:10971048-10970777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:233-493
               
               
               Cow position:chr8:37672260-37671990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):84, 226

               
               
               Conread position:233-494
               
               
               Cow position:chr8:12214212-12213959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):183, 87

               
               
               Conread position:233-494
               
               
               Cow position:chr8:42762222-42762485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 13

               
               
               Conread position:233-494
               
               
               Cow position:chr8:49305535-49305804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr8:53633026-53633281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):186, 30

               
               
               Conread position:233-494
               
               
               Cow position:chr8:54147883-54147610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:233-494
               
               
               Cow position:chr8:55089644-55089905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):186, 35

               
               
               Conread position:234-390
               
               
               Cow position:chr8:32332259-32332417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-396
               
               
               Cow position:chr8:31767826-31767984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr8:22428363-22428530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-399
               
               
               Cow position:chr8:34092983-34092811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:234-407
               
               
               Cow position:chr8:6194194-6194017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr8:5477642-5477821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr8:21776123-21775951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr8:37167957-37167773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr8:39352665-39352845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:234-422
               
               
               Cow position:chr8:690068-690255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:234-426
               
               
               Cow position:chr8:34556379-34556186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 181

               
               
               Conread position:234-438
               
               
               Cow position:chr8:61554772-61554969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:234-439
               
               
               Cow position:chr8:26961389-26961181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:234-439
               
               
               Cow position:chr8:45879239-45879044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):185, 31

               
               
               Conread position:234-439
               
               
               Cow position:chr8:45925821-45925626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):185, 31

               
               
               Conread position:234-440
               
               
               Cow position:chr8:61443007-61443209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:234-442
               
               
               Cow position:chr8:1526529-1526733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 80

               
               
               Conread position:234-442
               
               
               Cow position:chr8:28228451-28228249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:234-442
               
               
               Cow position:chr8:35497474-35497676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr8:46799069-46799280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:234-442
               
               
               Cow position:chr8:46964950-46964739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr8:51209004-51208786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:234-485
               
               
               Cow position:chr8:43942942-43942686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:234-492
               
               
               Cow position:chr8:5730242-5729998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):195, 72

               
               
               Conread position:234-493
               
               
               Cow position:chr8:42145554-42145831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:234-494
               
               
               Cow position:chr8:572949-573209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):6, 80

               
               
               Conread position:234-494
               
               
               Cow position:chr8:1297721-1297457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:234-494
               
               
               Cow position:chr8:1620512-1620783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:234-494
               
               
               Cow position:chr8:2897389-2897672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 137

               
               
               Conread position:234-494
               
               
               Cow position:chr8:6951729-6951471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):185, 34

               
               
               Conread position:234-494
               
               
               Cow position:chr8:33125703-33125449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:234-494
               
               
               Cow position:chr8:37215640-37215388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):212, 98

               
               
               Conread position:234-494
               
               
               Cow position:chr8:39807812-39807536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:234-494
               
               
               Cow position:chr8:45687465-45687724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 111

               
               
               Conread position:235-391
               
               
               Cow position:chr8:28382873-28383031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-391
               
               
               Cow position:chr8:38643297-38643453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:235-392
               
               
               Cow position:chr8:13118580-13118423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:235-392
               
               
               Cow position:chr8:39385356-39385512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:235-396
               
               
               Cow position:chr8:4557706-4557856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:235-396
               
               
               Cow position:chr8:50403747-50403911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-399
               
               
               Cow position:chr8:5385471-5385635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:235-411
               
               
               Cow position:chr8:10832219-10832398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:235-411
               
               
               Cow position:chr8:49281815-49281995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:235-413
               
               
               Cow position:chr8:1970871-1971051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:235-414
               
               
               Cow position:chr8:6416949-6417129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr8:39380083-39380257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:235-414
               
               
               Cow position:chr8:39475751-39475565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:235-414
               
               
               Cow position:chr8:48173792-48173970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:235-417
               
               
               Cow position:chr8:5665477-5665664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr8:9815104-9814923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:235-417
               
               
               Cow position:chr8:26147785-26147605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 88

               
               
               Conread position:235-417
               
               
               Cow position:chr8:38843413-38843597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:235-417
               
               
               Cow position:chr8:38860781-38860591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-417
               
               
               Cow position:chr8:40743007-40743190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:235-421
               
               
               Cow position:chr8:24460713-24460534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:235-424
               
               
               Cow position:chr8:11216647-11216833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:235-424
               
               
               Cow position:chr8:13479199-13479008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:235-424
               
               
               Cow position:chr8:27138587-27138770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:235-424
               
               
               Cow position:chr8:37148524-37148332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-425
               
               
               Cow position:chr8:37437140-37437328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:235-430
               
               
               Cow position:chr8:6184026-6184223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:235-430
               
               
               Cow position:chr8:51443485-51443685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:235-430
               
               
               Cow position:chr8:55725555-55725752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:235-431
               
               
               Cow position:chr8:29934256-29934056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):122, 84

               
               
               Conread position:235-434
               
               
               Cow position:chr8:26881616-26881814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):122, 126

               
               
               Conread position:235-439
               
               
               Cow position:chr8:3762361-3762155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:235-442
               
               
               Cow position:chr8:3914809-3914595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:235-442
               
               
               Cow position:chr8:5173073-5173281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):78, 90

               
               
               Conread position:235-442
               
               
               Cow position:chr8:19785069-19784866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:235-442
               
               
               Cow position:chr8:20105660-20105869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:235-442
               
               
               Cow position:chr8:48555451-48555652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:235-442
               
               
               Cow position:chr8:52870392-52870186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:235-444
               
               
               Cow position:chr8:46479672-46479878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:235-444
               
               
               Cow position:chr8:60746855-60746641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-446
               
               
               Cow position:chr8:32457999-32457787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:235-469
               
               
               Cow position:chr8:24870595-24870828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:235-473
               
               
               Cow position:chr8:38711798-38711568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):184, 79

               
               
               Conread position:235-473
               
               
               Cow position:chr8:39329647-39329888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:235-485
               
               
               Cow position:chr8:22592854-22593113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 153

               
               
               Conread position:235-492
               
               
               Cow position:chr8:18017732-18017466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:235-493
               
               
               Cow position:chr8:52773145-52772877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):120, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr8:4655931-4656185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:235-494
               
               
               Cow position:chr8:6665330-6665605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:235-494
               
               
               Cow position:chr8:6816463-6816724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:235-494
               
               
               Cow position:chr8:17046548-17046815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):73, 124

               
               
               Conread position:235-494
               
               
               Cow position:chr8:19642678-19642417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 73

               
               
               Conread position:235-494
               
               
               Cow position:chr8:24237302-24237024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:235-494
               
               
               Cow position:chr8:27731251-27730984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:235-494
               
               
               Cow position:chr8:28322184-28321920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr8:37571492-37571757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):122, 126

               
               
               Conread position:235-494
               
               
               Cow position:chr8:41905409-41905673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:235-494
               
               
               Cow position:chr8:41914317-41914581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:235-494
               
               
               Cow position:chr8:47342950-47342683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:235-494
               
               
               Cow position:chr8:51524218-51523957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:235-494
               
               
               Cow position:chr8:53606307-53606573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):75, 129

               
               
               Conread position:236-411
               
               
               Cow position:chr8:24363427-24363602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:236-414
               
               
               Cow position:chr8:11003586-11003767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:236-442
               
               
               Cow position:chr8:28210196-28209986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:236-442
               
               
               Cow position:chr8:54052507-54052312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:236-487
               
               
               Cow position:chr8:22554079-22554320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:236-494
               
               
               Cow position:chr8:25272042-25271773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:237-385
               
               
               Cow position:chr8:39488389-39488245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:238-390
               
               
               Cow position:chr8:10639949-10639792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:238-417
               
               
               Cow position:chr8:25639897-25640071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:238-494
               
               
               Cow position:chr8:6248678-6248931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):182, 25

               
               
               Conread position:238-494
               
               
               Cow position:chr8:10456670-10456411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):181, 40

               
               
               Conread position:239-349
               
               
               Cow position:chr8:6698672-6698559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-354
               
               
               Cow position:chr8:15928944-15929058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:239-410
               
               
               Cow position:chr8:3290611-3290777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:239-414
               
               
               Cow position:chr8:36397479-36397652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:239-494
               
               
               Cow position:chr8:3015689-3015419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:239-494
               
               
               Cow position:chr8:10336836-10337092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 76

               
               
               Conread position:239-494
               
               
               Cow position:chr8:26651495-26651231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:240-369
               
               
               Cow position:chr8:11555249-11555372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:240-379
               
               
               Cow position:chr8:33865056-33864919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:240-382
               
               
               Cow position:chr8:13925839-13925694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:240-385
               
               
               Cow position:chr8:23596564-23596701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-390
               
               
               Cow position:chr8:26305657-26305809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-398
               
               
               Cow position:chr8:45167424-45167584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:240-399
               
               
               Cow position:chr8:32968273-32968121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):149, 15

               
               
               Conread position:240-399
               
               
               Cow position:chr8:51501081-51501238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr8:54239770-54239613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:240-410
               
               
               Cow position:chr8:16144339-16144167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:240-410
               
               
               Cow position:chr8:22129775-22129931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-411
               
               
               Cow position:chr8:19727659-19727483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 136

               
               
               Conread position:240-414
               
               
               Cow position:chr8:6160979-6160810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:240-417
               
               
               Cow position:chr8:8772868-8773048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:240-417
               
               
               Cow position:chr8:16216265-16216089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:240-417
               
               
               Cow position:chr8:19223455-19223629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:240-417
               
               
               Cow position:chr8:19378462-19378281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr8:53383601-53383434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-417
               
               
               Cow position:chr8:54546805-54546621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-422
               
               
               Cow position:chr8:50024757-50024940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:240-423
               
               
               Cow position:chr8:11927344-11927151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:240-424
               
               
               Cow position:chr8:5484364-5484551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr8:23370114-23370286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr8:39545204-39545022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr8:15922055-15922263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:240-442
               
               
               Cow position:chr8:43153467-43153686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-443
               
               
               Cow position:chr8:53587117-53587314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:240-445
               
               
               Cow position:chr8:32304145-32303929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 131

               
               
               Conread position:240-467
               
               
               Cow position:chr8:22599884-22600119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:240-479
               
               
               Cow position:chr8:36299684-36299932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-487
               
               
               Cow position:chr8:22615248-22615503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):113, 100

               
               
               Conread position:240-488
               
               
               Cow position:chr8:10082091-10081868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):179, 22

               
               
               Conread position:240-490
               
               
               Cow position:chr8:16413607-16413859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:240-492
               
               
               Cow position:chr8:12799129-12798863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:240-492
               
               
               Cow position:chr8:44449400-44449650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:240-493
               
               
               Cow position:chr8:1024166-1023912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:240-493
               
               
               Cow position:chr8:8189852-8190119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr8:16061279-16061026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:240-494
               
               
               Cow position:chr8:16938275-16938511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr8:19474874-19475140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr8:20107588-20107838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:240-494
               
               
               Cow position:chr8:37635790-37636047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-494
               
               
               Cow position:chr8:38572064-38572325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:240-494
               
               
               Cow position:chr8:42794107-42794372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):58, 238

               
               
               Conread position:240-494
               
               
               Cow position:chr8:47170151-47169888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:240-494
               
               
               Cow position:chr8:48527758-48528018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:240-494
               
               
               Cow position:chr8:52657365-52657119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:240-494
               
               
               Cow position:chr8:53746366-53746632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:240-496
               
               
               Cow position:chr8:37391152-37391418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:241-392
               
               
               Cow position:chr8:3821777-3821929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 105

               
               
               Conread position:241-392
               
               
               Cow position:chr8:43052179-43052024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:241-398
               
               
               Cow position:chr8:38996861-38996704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-417
               
               
               Cow position:chr8:42378691-42378867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-424
               
               
               Cow position:chr8:3423211-3423027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:241-426
               
               
               Cow position:chr8:61739472-61739650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:241-442
               
               
               Cow position:chr8:55194380-55194177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:241-444
               
               
               Cow position:chr8:37291881-37292088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:241-480
               
               
               Cow position:chr8:48512821-48513048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):178, 29

               
               
               Conread position:241-486
               
               
               Cow position:chr8:59250929-59250682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):178, 64

               
               
               Conread position:241-493
               
               
               Cow position:chr8:39487433-39487689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:241-493
               
               
               Cow position:chr8:39592796-39592534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:241-494
               
               
               Cow position:chr8:6909955-6910214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):73, 51

               
               
               Conread position:241-494
               
               
               Cow position:chr8:18831951-18831681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:241-494
               
               
               Cow position:chr8:24512939-24513199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 122

               
               
               Conread position:241-494
               
               
               Cow position:chr8:24867541-24867798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:241-494
               
               
               Cow position:chr8:47283862-47284123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 143

               
               
               Conread position:241-496
               
               
               Cow position:chr8:9509691-9509948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:242-399
               
               
               Cow position:chr8:1651797-1651638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:242-414
               
               
               Cow position:chr8:25554622-25554796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:242-430
               
               
               Cow position:chr8:22223447-22223631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:242-442
               
               
               Cow position:chr8:30324521-30324327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):177, 56

               
               
               Conread position:242-462
               
               
               Cow position:chr8:40633663-40633884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:242-480
               
               
               Cow position:chr8:55159454-55159707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:242-494
               
               
               Cow position:chr8:18057933-18057697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):177, 62

               
               
               Conread position:242-494
               
               
               Cow position:chr8:55454866-55454616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):115, 74

               
               
               Conread position:243-399
               
               
               Cow position:chr8:638597-638450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:244-379
               
               
               Cow position:chr8:58626664-58626531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:244-494
               
               
               Cow position:chr8:26284652-26284909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:244-494
               
               
               Cow position:chr8:32130433-32130182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):175, 73

               
               
               Conread position:245-442
               
               
               Cow position:chr8:20091513-20091317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:245-480
               
               
               Cow position:chr8:61067485-61067248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:245-490
               
               
               Cow position:chr8:35583374-35583609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):174, 27

               
               
               Conread position:245-493
               
               
               Cow position:chr8:8097064-8097317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:245-493
               
               
               Cow position:chr8:16505689-16505440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):201, 46

               
               
               Conread position:245-494
               
               
               Cow position:chr8:8927358-8927621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:245-494
               
               
               Cow position:chr8:61567171-61567429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):61, 176

               
               
               Conread position:246-382
               
               
               Cow position:chr8:49938993-49939131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:246-494
               
               
               Cow position:chr8:55897618-55897869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:247-389
               
               
               Cow position:chr8:36912334-36912478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:247-490
               
               
               Cow position:chr8:17179842-17180081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):172, 20

               
               
               Conread position:247-494
               
               
               Cow position:chr8:40032604-40032867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):58, 203

               
               
               Conread position:248-389
               
               
               Cow position:chr8:18887514-18887379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:248-417
               
               
               Cow position:chr8:676114-676286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:248-417
               
               
               Cow position:chr8:8283099-8283270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:248-417
               
               
               Cow position:chr8:50310654-50310821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:248-427
               
               
               Cow position:chr8:58598835-58598659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 70

               
               
               Conread position:248-430
               
               
               Cow position:chr8:27774082-27774256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:248-441
               
               
               Cow position:chr8:54197671-54197874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr8:6073622-6073872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:248-494
               
               
               Cow position:chr8:20320684-20320438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:248-494
               
               
               Cow position:chr8:41219527-41219271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:248-494
               
               
               Cow position:chr8:57406966-57406705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 231

               
               
               Conread position:249-410
               
               
               Cow position:chr8:4753779-4753934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:249-444
               
               
               Cow position:chr8:11124369-11124560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):108, 69

               
               
               Conread position:249-469
               
               
               Cow position:chr8:45860008-45859787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 198

               
               
               Conread position:249-493
               
               
               Cow position:chr8:15394661-15394914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:250-417
               
               
               Cow position:chr8:3793349-3793182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-442
               
               
               Cow position:chr8:1999828-1999633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:250-466
               
               
               Cow position:chr8:34059966-34060180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):169, 74

               
               
               Conread position:250-492
               
               
               Cow position:chr8:59766790-59766546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):169, 67

               
               
               Conread position:250-494
               
               
               Cow position:chr8:19857771-19858029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:251-442
               
               
               Cow position:chr8:18081723-18081540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:253-441
               
               
               Cow position:chr8:20409882-20409693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:254-492
               
               
               Cow position:chr8:17247410-17247176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):165, 60

               
               
               Conread position:255-494
               
               
               Cow position:chr8:15390977-15391216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):152, 52

               
               
               Conread position:255-494
               
               
               Cow position:chr8:32278154-32278404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:258-400
               
               
               Cow position:chr8:38658273-38658417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:259-494
               
               
               Cow position:chr8:36249231-36249476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):158, 65

               
               
               Conread position:261-440
               
               
               Cow position:chr8:34402483-34402301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:261-494
               
               
               Cow position:chr8:29765453-29765203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 173

               
               
               Conread position:263-443
               
               
               Cow position:chr8:21324333-21324515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:264-494
               
               
               Cow position:chr8:10400479-10400242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):155, 24

               
               
               Conread position:265-493
               
               
               Cow position:chr8:35580455-35580690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):154, 52

               
               
               Conread position:266-494
               
               
               Cow position:chr8:13661210-13660974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:267-494
               
               
               Cow position:chr8:5177373-5177133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:268-413
               
               
               Cow position:chr8:55191478-55191339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:269-494
               
               
               Cow position:chr8:45446925-45447156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:270-494
               
               
               Cow position:chr8:11606508-11606274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:270-494
               
               
               Cow position:chr8:19011622-19011849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:273-494
               
               
               Cow position:chr8:53338490-53338721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):146, 114

               
               
               Conread position:274-397
               
               
               Cow position:chr8:21057915-21058036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:274-414
               
               
               Cow position:chr8:24427029-24427170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:274-442
               
               
               Cow position:chr8:40697051-40696882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 138

               
               
               Conread position:274-446
               
               
               Cow position:chr8:55853502-55853335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):135, 40

               
               
               Conread position:274-494
               
               
               Cow position:chr8:58417859-58417633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 162

               
               
               Conread position:279-494
               
               
               Cow position:chr8:4648721-4648942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):137, 5

               
               
               Conread position:281-397
               
               
               Cow position:chr8:33020379-33020264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:283-442
               
               
               Cow position:chr8:5884527-5884687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:290-442
               
               
               Cow position:chr8:33994401-33994246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:292-494
               
               
               Cow position:chr8:16031421-16031628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 186

               
               
               Conread position:295-417
               
               
               Cow position:chr8:5546289-5546168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:296-411
               
               
               Cow position:chr8:56580758-56580645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:296-494
               
               
               Cow position:chr8:38861548-38861755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:298-437
               
               
               Cow position:chr8:4590860-4590998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:298-496
               
               
               Cow position:chr8:38682029-38681822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:299-494
               
               
               Cow position:chr8:34774642-34774444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):146, 21

               
               
               Conread position:302-463
               
               
               Cow position:chr8:32197996-32198161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:302-487
               
               
               Cow position:chr8:45126089-45126285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr8:6531559-6531364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:302-494
               
               
               Cow position:chr8:21077725-21077533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:302-494
               
               
               Cow position:chr8:39174095-39174300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr8:50709199-50708998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr8:53948282-53948483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:302-495
               
               
               Cow position:chr8:15569338-15569538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:303-489
               
               
               Cow position:chr8:17167714-17167516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-493
               
               
               Cow position:chr8:28987843-28987644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):116, 170

               
               
               Conread position:303-494
               
               
               Cow position:chr8:28313580-28313776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:305-442
               
               
               Cow position:chr8:36718701-36718565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:305-496
               
               
               Cow position:chr8:3922574-3922771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:307-473
               
               
               Cow position:chr8:61556814-61556975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:307-494
               
               
               Cow position:chr8:36672058-36671861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:307-494
               
               
               Cow position:chr8:47500946-47500747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:308-492
               
               
               Cow position:chr8:20073041-20073236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:309-494
               
               
               Cow position:chr8:32094009-32093824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:310-494
               
               
               Cow position:chr8:33974694-33974503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:311-493
               
               
               Cow position:chr8:4924702-4924515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:311-494
               
               
               Cow position:chr8:8577965-8577782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):105, 129

               
               
               Conread position:319-489
               
               
               Cow position:chr8:44557912-44558091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:319-493
               
               
               Cow position:chr8:6484803-6484986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 163

               
               
               Conread position:324-442
               
               
               Cow position:chr8:10846362-10846243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:326-494
               
               
               Cow position:chr8:3339197-3339033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:326-494
               
               
               Cow position:chr8:35991171-35990995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:329-492
               
               
               Cow position:chr8:45830997-45830837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 57

               
               
               Conread position:329-494
               
               
               Cow position:chr8:29624851-29625024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:332-492
               
               
               Cow position:chr8:1843018-1843178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:157-442
               
               
               Cow position:chr9:28726976-28726688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:191-407
               
               
               Cow position:chr9:8537092-8537305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:204-494
               
               
               Cow position:chr9:9753606-9753300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:208-417
               
               
               Cow position:chr9:34362538-34362748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:208-417
               
               
               Cow position:chr9:44314911-44314696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:213-417
               
               
               Cow position:chr9:4257170-4256977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:214-494
               
               
               Cow position:chr9:9403364-9403082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:215-485
               
               
               Cow position:chr9:30477962-30477692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):204, 10

               
               
               Conread position:216-444
               
               
               Cow position:chr9:14738060-14738287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:217-399
               
               
               Cow position:chr9:8645071-8645258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:218-442
               
               
               Cow position:chr9:38866169-38865947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:218-453
               
               
               Cow position:chr9:22440660-22440434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):141, 5

               
               
               Conread position:219-494
               
               
               Cow position:chr9:36491091-36490798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:220-417
               
               
               Cow position:chr9:28718531-28718722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:220-417
               
               
               Cow position:chr9:32773037-32773223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:220-442
               
               
               Cow position:chr9:49709654-49709881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):90, 187

               
               
               Conread position:221-414
               
               
               Cow position:chr9:41717883-41717685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:221-442
               
               
               Cow position:chr9:5757163-5756952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:221-442
               
               
               Cow position:chr9:22466590-22466808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:221-494
               
               
               Cow position:chr9:35028352-35028073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:222-317
               
               
               Cow position:chr9:30653241-30653146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr9:8066223-8066079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:222-387
               
               
               Cow position:chr9:20712653-20712816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:222-387
               
               
               Cow position:chr9:62136305-62136134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 141

               
               
               Conread position:222-417
               
               
               Cow position:chr9:48901019-48900826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:222-442
               
               
               Cow position:chr9:4629923-4630139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:222-442
               
               
               Cow position:chr9:27355737-27355957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:222-442
               
               
               Cow position:chr9:27358523-27358743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:222-442
               
               
               Cow position:chr9:48563891-48564120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:222-442
               
               
               Cow position:chr9:63361895-63361683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):196, 87

               
               
               Conread position:222-494
               
               
               Cow position:chr9:21387242-21387516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:222-494
               
               
               Cow position:chr9:40215063-40215335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 96

               
               
               Conread position:222-494
               
               
               Cow position:chr9:54681337-54681600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):197, 48

               
               
               Conread position:223-340
               
               
               Cow position:chr9:12690867-12690749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:223-382
               
               
               Cow position:chr9:9759752-9759601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:223-392
               
               
               Cow position:chr9:13141345-13141523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:223-392
               
               
               Cow position:chr9:54940614-54940441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 137

               
               
               Conread position:223-399
               
               
               Cow position:chr9:61847298-61847132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:223-407
               
               
               Cow position:chr9:26388033-26388208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:223-442
               
               
               Cow position:chr9:33114157-33114381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:223-467
               
               
               Cow position:chr9:33838492-33838254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:223-490
               
               
               Cow position:chr9:20322277-20322015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:223-494
               
               
               Cow position:chr9:18380684-18380956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:224-373
               
               
               Cow position:chr9:5061702-5061554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:224-417
               
               
               Cow position:chr9:36634322-36634517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-440
               
               
               Cow position:chr9:35306531-35306312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:224-442
               
               
               Cow position:chr9:21292589-21292371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):193, 82

               
               
               Conread position:224-490
               
               
               Cow position:chr9:63785091-63784835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):195, 78

               
               
               Conread position:224-494
               
               
               Cow position:chr9:11299855-11299597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):206, 93

               
               
               Conread position:225-316
               
               
               Cow position:chr9:5219640-5219547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:225-354
               
               
               Cow position:chr9:16770809-16770948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:225-414
               
               
               Cow position:chr9:56827280-56827483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:225-417
               
               
               Cow position:chr9:59586134-59586321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:225-442
               
               
               Cow position:chr9:23541580-23541360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:225-469
               
               
               Cow position:chr9:9573140-9573395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:225-493
               
               
               Cow position:chr9:4341337-4341077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 76

               
               
               Conread position:225-494
               
               
               Cow position:chr9:7952721-7952995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:225-494
               
               
               Cow position:chr9:9724059-9723790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:225-494
               
               
               Cow position:chr9:33597793-33598074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:226-404
               
               
               Cow position:chr9:53632106-53631926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:226-417
               
               
               Cow position:chr9:3847214-3847412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:226-494
               
               
               Cow position:chr9:8629092-8628822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:226-494
               
               
               Cow position:chr9:22152263-22151989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:226-494
               
               
               Cow position:chr9:51620264-51620531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:226-494
               
               
               Cow position:chr9:55795578-55795854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):209, 147

               
               
               Conread position:227-307
               
               
               Cow position:chr9:5162514-5162434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:72
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-356
               
               
               Cow position:chr9:1894196-1894064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:227-373
               
               
               Cow position:chr9:21816351-21816497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:227-377
               
               
               Cow position:chr9:3946325-3946178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-380
               
               
               Cow position:chr9:34034090-34034249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:227-380
               
               
               Cow position:chr9:63712915-63713059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:227-382
               
               
               Cow position:chr9:31625952-31626109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):92, 136

               
               
               Conread position:227-385
               
               
               Cow position:chr9:33248142-33247992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:227-387
               
               
               Cow position:chr9:388367-388213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr9:22360693-22360846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-391
               
               
               Cow position:chr9:53390385-53390218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:227-397
               
               
               Cow position:chr9:53323967-53323794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:227-397
               
               
               Cow position:chr9:54611498-54611327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr9:9494980-9495148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:227-399
               
               
               Cow position:chr9:40586893-40587052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):135, 14

               
               
               Conread position:227-399
               
               
               Cow position:chr9:51891072-51891238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:227-399
               
               
               Cow position:chr9:60683766-60683943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:227-406
               
               
               Cow position:chr9:14519554-14519382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:227-407
               
               
               Cow position:chr9:11393390-11393207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:227-407
               
               
               Cow position:chr9:52638349-52638167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 131

               
               
               Conread position:227-409
               
               
               Cow position:chr9:55013520-55013330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 171

               
               
               Conread position:227-414
               
               
               Cow position:chr9:8467880-8468064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:227-414
               
               
               Cow position:chr9:8967753-8967943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:227-414
               
               
               Cow position:chr9:11950212-11950023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 121

               
               
               Conread position:227-417
               
               
               Cow position:chr9:8613392-8613201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:227-417
               
               
               Cow position:chr9:17785749-17785556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:227-417
               
               
               Cow position:chr9:19771181-19771372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:227-417
               
               
               Cow position:chr9:22447473-22447284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-417
               
               
               Cow position:chr9:30137943-30138129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:227-417
               
               
               Cow position:chr9:36457817-36458009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr9:43352796-43352986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 118

               
               
               Conread position:227-417
               
               
               Cow position:chr9:50977435-50977242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-417
               
               
               Cow position:chr9:52130833-52131020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:227-423
               
               
               Cow position:chr9:32052097-32052293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:227-426
               
               
               Cow position:chr9:32877879-32878074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:227-426
               
               
               Cow position:chr9:59897417-59897609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:227-431
               
               
               Cow position:chr9:53602033-53602244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 181

               
               
               Conread position:227-440
               
               
               Cow position:chr9:42586727-42586522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:227-442
               
               
               Cow position:chr9:17799456-17799662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):157, 93

               
               
               Conread position:227-442
               
               
               Cow position:chr9:33347660-33347454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):192, 75

               
               
               Conread position:227-442
               
               
               Cow position:chr9:44822501-44822288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 84

               
               
               Conread position:227-442
               
               
               Cow position:chr9:47591163-47590945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-442
               
               
               Cow position:chr9:53123908-53124125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:227-466
               
               
               Cow position:chr9:39315684-39315915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:227-472
               
               
               Cow position:chr9:5104589-5104339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:227-485
               
               
               Cow position:chr9:9516927-9516678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:227-485
               
               
               Cow position:chr9:56065387-56065640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):192, 88

               
               
               Conread position:227-486
               
               
               Cow position:chr9:34279238-34278969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):91, 210

               
               
               Conread position:227-490
               
               
               Cow position:chr9:9199950-9199691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):196, 41

               
               
               Conread position:227-490
               
               
               Cow position:chr9:9551910-9552182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:227-493
               
               
               Cow position:chr9:8834311-8834037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:227-493
               
               
               Cow position:chr9:26403614-26403877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:227-494
               
               
               Cow position:chr9:5327081-5327349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr9:8636499-8636762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:227-494
               
               
               Cow position:chr9:10650466-10650208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:227-494
               
               
               Cow position:chr9:19067590-19067878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:227-494
               
               
               Cow position:chr9:20579767-20579506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:227-494
               
               
               Cow position:chr9:27279127-27279402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:227-494
               
               
               Cow position:chr9:28772964-28773215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-494
               
               
               Cow position:chr9:31215900-31216169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):161, 222

               
               
               Conread position:227-494
               
               
               Cow position:chr9:38624804-38624531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:227-494
               
               
               Cow position:chr9:48627844-48628124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:227-494
               
               
               Cow position:chr9:51721066-51720809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):216, 79

               
               
               Conread position:227-494
               
               
               Cow position:chr9:52510936-52511208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:227-494
               
               
               Cow position:chr9:59013517-59013239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):194, 86

               
               
               Conread position:227-494
               
               
               Cow position:chr9:60080714-60080999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):104, 175

               
               
               Conread position:228-340
               
               
               Cow position:chr9:11216353-11216241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-397
               
               
               Cow position:chr9:34423437-34423611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:228-414
               
               
               Cow position:chr9:31346334-31346521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-442
               
               
               Cow position:chr9:7806132-7805925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):191, 79

               
               
               Conread position:228-442
               
               
               Cow position:chr9:13670458-13670670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):179, 79

               
               
               Conread position:228-442
               
               
               Cow position:chr9:34283776-34283989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:228-442
               
               
               Cow position:chr9:59998206-59998000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:228-477
               
               
               Cow position:chr9:8992357-8992106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 77

               
               
               Conread position:228-479
               
               
               Cow position:chr9:64637374-64637625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):215, 65

               
               
               Conread position:228-494
               
               
               Cow position:chr9:9459810-9460069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 75

               
               
               Conread position:228-494
               
               
               Cow position:chr9:9596128-9595861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 90

               
               
               Conread position:228-494
               
               
               Cow position:chr9:41282834-41283107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:229-361
               
               
               Cow position:chr9:52643417-52643551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:229-382
               
               
               Cow position:chr9:34001170-34001017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 72

               
               
               Conread position:229-392
               
               
               Cow position:chr9:6237667-6237508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 91

               
               
               Conread position:229-442
               
               
               Cow position:chr9:59699729-59699511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:229-443
               
               
               Cow position:chr9:20681579-20681369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):190, 79

               
               
               Conread position:229-494
               
               
               Cow position:chr9:5342423-5342158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:229-494
               
               
               Cow position:chr9:17840856-17840581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 91

               
               
               Conread position:229-494
               
               
               Cow position:chr9:58979228-58979491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 118

               
               
               Conread position:230-314
               
               
               Cow position:chr9:61274397-61274481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:74
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-320
               
               
               Cow position:chr9:36849453-36849543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-341
               
               
               Cow position:chr9:3970975-3970868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-351
               
               
               Cow position:chr9:18716282-18716401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:230-355
               
               
               Cow position:chr9:34875348-34875215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-370
               
               
               Cow position:chr9:55577535-55577671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:230-379
               
               
               Cow position:chr9:32019503-32019352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:230-380
               
               
               Cow position:chr9:20394490-20394342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:230-385
               
               
               Cow position:chr9:58440559-58440397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:230-391
               
               
               Cow position:chr9:26715077-26715239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:230-391
               
               
               Cow position:chr9:44526933-44527101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 139

               
               
               Conread position:230-391
               
               
               Cow position:chr9:54639993-54639835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:230-395
               
               
               Cow position:chr9:1917806-1917967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr9:3536675-3536513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:230-397
               
               
               Cow position:chr9:20828728-20828896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:230-397
               
               
               Cow position:chr9:32812012-32812171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:230-398
               
               
               Cow position:chr9:63185873-63185704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:230-399
               
               
               Cow position:chr9:40507769-40507605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:230-399
               
               
               Cow position:chr9:61019541-61019370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:230-406
               
               
               Cow position:chr9:35403403-35403582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:230-407
               
               
               Cow position:chr9:57642337-57642507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):160, 40

               
               
               Conread position:230-411
               
               
               Cow position:chr9:6205521-6205337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 134

               
               
               Conread position:230-411
               
               
               Cow position:chr9:16115781-16115604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:230-411
               
               
               Cow position:chr9:30012695-30012877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 95

               
               
               Conread position:230-414
               
               
               Cow position:chr9:2397634-2397814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 93

               
               
               Conread position:230-414
               
               
               Cow position:chr9:5068661-5068848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 175

               
               
               Conread position:230-414
               
               
               Cow position:chr9:5220992-5220803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-414
               
               
               Cow position:chr9:35295519-35295697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:230-415
               
               
               Cow position:chr9:17027021-17027205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:230-417
               
               
               Cow position:chr9:7611963-7611782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr9:7805608-7805785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr9:16121354-16121533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr9:22804145-22803961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):127, 88

               
               
               Conread position:230-417
               
               
               Cow position:chr9:32858820-32858625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 128

               
               
               Conread position:230-417
               
               
               Cow position:chr9:35049304-35049483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:230-417
               
               
               Cow position:chr9:40221360-40221176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-417
               
               
               Cow position:chr9:45444983-45445174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:230-417
               
               
               Cow position:chr9:46344749-46344946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 141

               
               
               Conread position:230-417
               
               
               Cow position:chr9:52689790-52689601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-419
               
               
               Cow position:chr9:9091284-9091093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:230-424
               
               
               Cow position:chr9:13993587-13993783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:230-439
               
               
               Cow position:chr9:35466699-35466489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:230-440
               
               
               Cow position:chr9:3573288-3573500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 147

               
               
               Conread position:230-440
               
               
               Cow position:chr9:42061917-42062135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:230-442
               
               
               Cow position:chr9:5110680-5110894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:230-442
               
               
               Cow position:chr9:8767590-8767380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:230-442
               
               
               Cow position:chr9:8901405-8901191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:230-442
               
               
               Cow position:chr9:25375909-25375700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:230-442
               
               
               Cow position:chr9:26477036-26477252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:230-442
               
               
               Cow position:chr9:36627946-36628154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):189, 74

               
               
               Conread position:230-442
               
               
               Cow position:chr9:41416154-41416369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):79, 118

               
               
               Conread position:230-442
               
               
               Cow position:chr9:41644929-41644714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:230-442
               
               
               Cow position:chr9:52485090-52484885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:230-442
               
               
               Cow position:chr9:52763929-52763724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:230-443
               
               
               Cow position:chr9:9443778-9443567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:230-447
               
               
               Cow position:chr9:63707872-63708089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:230-452
               
               
               Cow position:chr9:45483933-45484157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-459
               
               
               Cow position:chr9:7543433-7543205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):153, 37

               
               
               Conread position:230-467
               
               
               Cow position:chr9:17277068-17276829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):80, 217

               
               
               Conread position:230-480
               
               
               Cow position:chr9:61351521-61351259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:230-483
               
               
               Cow position:chr9:26557787-26558051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:230-488
               
               
               Cow position:chr9:34024523-34024789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 93

               
               
               Conread position:230-490
               
               
               Cow position:chr9:15215866-15215596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-490
               
               
               Cow position:chr9:38941613-38941342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 135

               
               
               Conread position:230-492
               
               
               Cow position:chr9:10118842-10118573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):121, 191

               
               
               Conread position:230-492
               
               
               Cow position:chr9:45141772-45141510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 77

               
               
               Conread position:230-493
               
               
               Cow position:chr9:1878174-1877915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):185, 66

               
               
               Conread position:230-493
               
               
               Cow position:chr9:21030128-21030401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-493
               
               
               Cow position:chr9:41728084-41728351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 89

               
               
               Conread position:230-494
               
               
               Cow position:chr9:5456352-5456084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 100

               
               
               Conread position:230-494
               
               
               Cow position:chr9:6192633-6192368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 87

               
               
               Conread position:230-494
               
               
               Cow position:chr9:8998177-8998450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):189, 49

               
               
               Conread position:230-494
               
               
               Cow position:chr9:9311683-9311954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):189, 85

               
               
               Conread position:230-494
               
               
               Cow position:chr9:10144657-10144383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:230-494
               
               
               Cow position:chr9:11168569-11168823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:230-494
               
               
               Cow position:chr9:13945426-13945688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 192

               
               
               Conread position:230-494
               
               
               Cow position:chr9:20318750-20318483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:230-494
               
               
               Cow position:chr9:22318185-22318444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):181, 76

               
               
               Conread position:230-494
               
               
               Cow position:chr9:26279349-26279078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 230

               
               
               Conread position:230-494
               
               
               Cow position:chr9:32815476-32815735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 81

               
               
               Conread position:230-494
               
               
               Cow position:chr9:34375102-34374836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:230-494
               
               
               Cow position:chr9:34697478-34697212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:230-494
               
               
               Cow position:chr9:43159579-43159835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr9:43623089-43623351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-494
               
               
               Cow position:chr9:48730252-48730522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 161

               
               
               Conread position:230-494
               
               
               Cow position:chr9:50125776-50125500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:230-494
               
               
               Cow position:chr9:52406994-52407260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:230-494
               
               
               Cow position:chr9:58132124-58131870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):186, 34

               
               
               Conread position:231-371
               
               
               Cow position:chr9:49764470-49764613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr9:3387541-3387671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:231-381
               
               
               Cow position:chr9:33032615-33032473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:231-389
               
               
               Cow position:chr9:19034180-19034339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:231-389
               
               
               Cow position:chr9:23027352-23027506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:231-392
               
               
               Cow position:chr9:27261568-27261405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):101, 133

               
               
               Conread position:231-396
               
               
               Cow position:chr9:55284516-55284355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-397
               
               
               Cow position:chr9:13722315-13722148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:231-399
               
               
               Cow position:chr9:9243369-9243543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr9:12268860-12269022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:231-406
               
               
               Cow position:chr9:5357846-5358010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:231-408
               
               
               Cow position:chr9:23840580-23840393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:231-409
               
               
               Cow position:chr9:34264908-34265097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:231-410
               
               
               Cow position:chr9:5772855-5772674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:231-413
               
               
               Cow position:chr9:3762658-3762842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:231-414
               
               
               Cow position:chr9:49679935-49680121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:231-417
               
               
               Cow position:chr9:36401835-36401655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:231-422
               
               
               Cow position:chr9:4263263-4263075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:231-426
               
               
               Cow position:chr9:55191264-55191457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):149, 60

               
               
               Conread position:231-430
               
               
               Cow position:chr9:24079130-24079326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):188, 89

               
               
               Conread position:231-431
               
               
               Cow position:chr9:42508653-42508857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):147, 92

               
               
               Conread position:231-439
               
               
               Cow position:chr9:33151574-33151775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):188, 85

               
               
               Conread position:231-442
               
               
               Cow position:chr9:3924280-3924479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:231-442
               
               
               Cow position:chr9:4241233-4241442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):126, 17

               
               
               Conread position:231-442
               
               
               Cow position:chr9:8723620-8723829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:231-442
               
               
               Cow position:chr9:11030009-11030220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:231-442
               
               
               Cow position:chr9:12280798-12281007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):188, 89

               
               
               Conread position:231-442
               
               
               Cow position:chr9:35166994-35167212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:231-467
               
               
               Cow position:chr9:36453713-36453481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:231-490
               
               
               Cow position:chr9:58662068-58662328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):208, 158

               
               
               Conread position:231-492
               
               
               Cow position:chr9:29819551-29819807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:231-492
               
               
               Cow position:chr9:37198952-37199215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 92

               
               
               Conread position:231-493
               
               
               Cow position:chr9:54492963-54493231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:231-494
               
               
               Cow position:chr9:6189538-6189278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:231-494
               
               
               Cow position:chr9:9461842-9461562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:231-494
               
               
               Cow position:chr9:26345137-26344874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):111, 86

               
               
               Conread position:231-494
               
               
               Cow position:chr9:31359430-31359694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):195, 75

               
               
               Conread position:231-494
               
               
               Cow position:chr9:42497653-42497919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):126, 87

               
               
               Conread position:231-494
               
               
               Cow position:chr9:45171398-45171125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):188, 73

               
               
               Conread position:231-494
               
               
               Cow position:chr9:47868849-47869102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):171, 70

               
               
               Conread position:231-496
               
               
               Cow position:chr9:13460583-13460323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):204, 39

               
               
               Conread position:231-496
               
               
               Cow position:chr9:34689780-34689500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 135

               
               
               Conread position:232-308
               
               
               Cow position:chr9:32982749-32982673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:77
               
               
               Alignm identity:71
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr9:38370302-38370423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-380
               
               
               Cow position:chr9:3789846-3789986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:232-381
               
               
               Cow position:chr9:64302806-64302657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:232-389
               
               
               Cow position:chr9:30194837-30194993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 83

               
               
               Conread position:232-399
               
               
               Cow position:chr9:17719099-17719254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:232-399
               
               
               Cow position:chr9:58719382-58719204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:232-408
               
               
               Cow position:chr9:11380819-11380645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:232-415
               
               
               Cow position:chr9:36624102-36623917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:232-423
               
               
               Cow position:chr9:20017223-20017413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 129

               
               
               Conread position:232-425
               
               
               Cow position:chr9:61301151-61300959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 83

               
               
               Conread position:232-427
               
               
               Cow position:chr9:62631841-62631650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):138, 82

               
               
               Conread position:232-431
               
               
               Cow position:chr9:12129134-12129332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 131

               
               
               Conread position:232-442
               
               
               Cow position:chr9:32089218-32089425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:232-442
               
               
               Cow position:chr9:50202380-50202609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:232-450
               
               
               Cow position:chr9:33101279-33101070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):181, 69

               
               
               Conread position:232-472
               
               
               Cow position:chr9:25804654-25804896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 136

               
               
               Conread position:232-475
               
               
               Cow position:chr9:54664674-54664926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 146

               
               
               Conread position:232-490
               
               
               Cow position:chr9:33584858-33584593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-492
               
               
               Cow position:chr9:28747692-28747431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:232-492
               
               
               Cow position:chr9:56088252-56087977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:232-493
               
               
               Cow position:chr9:18342540-18342823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 276

               
               
               Conread position:232-493
               
               
               Cow position:chr9:19902918-19903173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):184, 53

               
               
               Conread position:232-494
               
               
               Cow position:chr9:4268177-4267890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):67, 276

               
               
               Conread position:232-494
               
               
               Cow position:chr9:5227334-5227077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 70

               
               
               Conread position:232-494
               
               
               Cow position:chr9:24887031-24887293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:232-494
               
               
               Cow position:chr9:45728603-45728872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:232-494
               
               
               Cow position:chr9:61302829-61303097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:233-340
               
               
               Cow position:chr9:51019009-51019116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:233-345
               
               
               Cow position:chr9:43876129-43876018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:233-389
               
               
               Cow position:chr9:61434213-61434066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-404
               
               
               Cow position:chr9:16826374-16826199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:233-406
               
               
               Cow position:chr9:58611134-58611305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:233-430
               
               
               Cow position:chr9:34917350-34917163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr9:6839819-6840029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:233-442
               
               
               Cow position:chr9:43679947-43680156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:233-442
               
               
               Cow position:chr9:52513639-52513412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr9:64105730-64105935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):171, 85

               
               
               Conread position:233-443
               
               
               Cow position:chr9:12786649-12786436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-443
               
               
               Cow position:chr9:32307407-32307196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 188

               
               
               Conread position:233-449
               
               
               Cow position:chr9:33219132-33218911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:233-456
               
               
               Cow position:chr9:50310936-50310707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):85, 152

               
               
               Conread position:233-480
               
               
               Cow position:chr9:41785048-41785291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):186, 73

               
               
               Conread position:233-492
               
               
               Cow position:chr9:20090887-20091139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):182, 34

               
               
               Conread position:233-494
               
               
               Cow position:chr9:1751156-1751431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:233-494
               
               
               Cow position:chr9:5263331-5263595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:233-494
               
               
               Cow position:chr9:5392900-5393142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:233-494
               
               
               Cow position:chr9:12428676-12428414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 75

               
               
               Conread position:233-494
               
               
               Cow position:chr9:34666279-34666514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 56

               
               
               Conread position:233-494
               
               
               Cow position:chr9:39011640-39011376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:233-494
               
               
               Cow position:chr9:56453173-56453426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):210, 67

               
               
               Conread position:234-382
               
               
               Cow position:chr9:45170556-45170406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-385
               
               
               Cow position:chr9:20355697-20355845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:234-387
               
               
               Cow position:chr9:50647897-50648047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:234-389
               
               
               Cow position:chr9:33033901-33034056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:234-396
               
               
               Cow position:chr9:60741355-60741195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:234-404
               
               
               Cow position:chr9:20406483-20406649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):126, 83

               
               
               Conread position:234-406
               
               
               Cow position:chr9:11447979-11447809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 111

               
               
               Conread position:234-411
               
               
               Cow position:chr9:54677085-54677268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-414
               
               
               Cow position:chr9:24748504-24748686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:234-414
               
               
               Cow position:chr9:53061481-53061669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:234-414
               
               
               Cow position:chr9:58734091-58734263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:234-416
               
               
               Cow position:chr9:16216806-16216990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:234-417
               
               
               Cow position:chr9:40984332-40984515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-420
               
               
               Cow position:chr9:35932986-35932799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 63

               
               
               Conread position:234-424
               
               
               Cow position:chr9:1884313-1884112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:234-438
               
               
               Cow position:chr9:12337728-12337934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-442
               
               
               Cow position:chr9:11098623-11098420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:234-442
               
               
               Cow position:chr9:22434096-22433893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:234-442
               
               
               Cow position:chr9:35832786-35832583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):185, 33

               
               
               Conread position:234-442
               
               
               Cow position:chr9:64629535-64629329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:234-472
               
               
               Cow position:chr9:26102560-26102788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):82, 111

               
               
               Conread position:234-493
               
               
               Cow position:chr9:61022448-61022703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 186

               
               
               Conread position:234-494
               
               
               Cow position:chr9:6397957-6397688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:234-494
               
               
               Cow position:chr9:19555217-19555467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:234-494
               
               
               Cow position:chr9:20755931-20755662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 150

               
               
               Conread position:234-494
               
               
               Cow position:chr9:22408585-22408840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:234-494
               
               
               Cow position:chr9:23632834-23632566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:234-494
               
               
               Cow position:chr9:34902269-34902015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):173, 71

               
               
               Conread position:234-494
               
               
               Cow position:chr9:36410522-36410264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):79, 105

               
               
               Conread position:234-494
               
               
               Cow position:chr9:49863728-49863457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 249

               
               
               Conread position:234-494
               
               
               Cow position:chr9:53109079-53109346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):182, 86

               
               
               Conread position:234-494
               
               
               Cow position:chr9:55256721-55256457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):185, 86

               
               
               Conread position:234-495
               
               
               Cow position:chr9:13169837-13169567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 234

               
               
               Conread position:234-496
               
               
               Cow position:chr9:25556811-25557071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):185, 78

               
               
               Conread position:234-496
               
               
               Cow position:chr9:43757373-43757637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:235-383
               
               
               Cow position:chr9:43345564-43345714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:235-390
               
               
               Cow position:chr9:34344438-34344595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-392
               
               
               Cow position:chr9:19657145-19656991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:235-392
               
               
               Cow position:chr9:47510741-47510585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-399
               
               
               Cow position:chr9:27308050-27307890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:235-399
               
               
               Cow position:chr9:54086181-54086023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:235-404
               
               
               Cow position:chr9:48046364-48046536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:235-410
               
               
               Cow position:chr9:34964905-34964740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr9:31694208-31694027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:235-411
               
               
               Cow position:chr9:34276384-34276206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:235-414
               
               
               Cow position:chr9:20942790-20942609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-417
               
               
               Cow position:chr9:31344781-31344597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 128

               
               
               Conread position:235-417
               
               
               Cow position:chr9:48808976-48809148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:235-422
               
               
               Cow position:chr9:58448297-58448107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:235-424
               
               
               Cow position:chr9:11271514-11271339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:235-424
               
               
               Cow position:chr9:34196023-34196211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:235-426
               
               
               Cow position:chr9:1403707-1403515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:235-431
               
               
               Cow position:chr9:19718505-19718315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):184, 70

               
               
               Conread position:235-442
               
               
               Cow position:chr9:34484419-34484631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:235-442
               
               
               Cow position:chr9:47517026-47517234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:235-442
               
               
               Cow position:chr9:48016818-48017017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):165, 85

               
               
               Conread position:235-442
               
               
               Cow position:chr9:57131327-57131531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:235-489
               
               
               Cow position:chr9:5900125-5899873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 82

               
               
               Conread position:235-490
               
               
               Cow position:chr9:32676506-32676767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:235-490
               
               
               Cow position:chr9:34410564-34410306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:235-490
               
               
               Cow position:chr9:37934410-37934147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:235-492
               
               
               Cow position:chr9:21460324-21460059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:235-493
               
               
               Cow position:chr9:44709662-44709917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):211, 19

               
               
               Conread position:235-494
               
               
               Cow position:chr9:8547638-8547907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:235-494
               
               
               Cow position:chr9:32670117-32669854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:235-494
               
               
               Cow position:chr9:40005306-40005569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):184, 33

               
               
               Conread position:235-494
               
               
               Cow position:chr9:45285710-45285433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-494
               
               
               Cow position:chr9:62859510-62859768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:235-495
               
               
               Cow position:chr9:42264050-42264301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):160, 69

               
               
               Conread position:235-495
               
               
               Cow position:chr9:52755023-52754762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:236-442
               
               
               Cow position:chr9:15806096-15805887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:237-485
               
               
               Cow position:chr9:33541882-33542141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-492
               
               
               Cow position:chr9:20466113-20465869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):182, 30

               
               
               Conread position:238-397
               
               
               Cow position:chr9:55117914-55118076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:238-417
               
               
               Cow position:chr9:48282026-48282212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:238-490
               
               
               Cow position:chr9:33822949-33823209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:238-494
               
               
               Cow position:chr9:8936980-8937238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:238-494
               
               
               Cow position:chr9:30123762-30124014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):192, 61

               
               
               Conread position:239-385
               
               
               Cow position:chr9:4244257-4244406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:239-442
               
               
               Cow position:chr9:26085890-26086092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:239-488
               
               
               Cow position:chr9:60395216-60394963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:239-493
               
               
               Cow position:chr9:52578706-52578443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:240-363
               
               
               Cow position:chr9:12495048-12495173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:240-368
               
               
               Cow position:chr9:34399504-34399632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-373
               
               
               Cow position:chr9:33201214-33201080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:240-378
               
               
               Cow position:chr9:34355943-34355806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:240-380
               
               
               Cow position:chr9:48367695-48367553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:240-387
               
               
               Cow position:chr9:15939497-15939351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:240-390
               
               
               Cow position:chr9:34743166-34743018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 60

               
               
               Conread position:240-397
               
               
               Cow position:chr9:20525247-20525394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-399
               
               
               Cow position:chr9:27495065-27495229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:240-402
               
               
               Cow position:chr9:1984650-1984484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 139

               
               
               Conread position:240-408
               
               
               Cow position:chr9:11873461-11873303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-409
               
               
               Cow position:chr9:44918444-44918279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:240-411
               
               
               Cow position:chr9:44625053-44625216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr9:10316542-10316375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):160, 29

               
               
               Conread position:240-414
               
               
               Cow position:chr9:44584435-44584600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr9:54598507-54598680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:240-417
               
               
               Cow position:chr9:28315258-28315439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:240-417
               
               
               Cow position:chr9:35845185-35845006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:240-417
               
               
               Cow position:chr9:39709687-39709867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:240-417
               
               
               Cow position:chr9:63169803-63169982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-422
               
               
               Cow position:chr9:41594302-41594112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:240-422
               
               
               Cow position:chr9:61286595-61286778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 85

               
               
               Conread position:240-425
               
               
               Cow position:chr9:8016705-8016888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:240-427
               
               
               Cow position:chr9:151700-151889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:240-429
               
               
               Cow position:chr9:53496929-53496731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:240-430
               
               
               Cow position:chr9:37951066-37950874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-435
               
               
               Cow position:chr9:9557517-9557715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:240-435
               
               
               Cow position:chr9:34760532-34760335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:240-438
               
               
               Cow position:chr9:27345755-27345552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:240-440
               
               
               Cow position:chr9:44759093-44758897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:240-442
               
               
               Cow position:chr9:13744100-13743894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr9:23971059-23970860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):147, 61

               
               
               Conread position:240-442
               
               
               Cow position:chr9:25583665-25583864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:240-442
               
               
               Cow position:chr9:39148916-39149115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:240-444
               
               
               Cow position:chr9:14975095-14974881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 131

               
               
               Conread position:240-464
               
               
               Cow position:chr9:2037270-2037497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):82, 177

               
               
               Conread position:240-480
               
               
               Cow position:chr9:51566664-51566413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:240-494
               
               
               Cow position:chr9:11309692-11309956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:240-494
               
               
               Cow position:chr9:17872273-17872013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):176, 74

               
               
               Conread position:240-494
               
               
               Cow position:chr9:23956143-23955890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 81

               
               
               Conread position:240-494
               
               
               Cow position:chr9:26057595-26057348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:240-494
               
               
               Cow position:chr9:33940431-33940698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:240-494
               
               
               Cow position:chr9:34286632-34286896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:240-494
               
               
               Cow position:chr9:53139301-53139039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:240-494
               
               
               Cow position:chr9:53762533-53762792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):176, 67

               
               
               Conread position:240-494
               
               
               Cow position:chr9:58614331-58614578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:240-495
               
               
               Cow position:chr9:44396493-44396752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:241-381
               
               
               Cow position:chr9:53120839-53120967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:241-385
               
               
               Cow position:chr9:51609114-51609253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 62

               
               
               Conread position:241-409
               
               
               Cow position:chr9:45740309-45740140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:241-410
               
               
               Cow position:chr9:5172697-5172530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:241-418
               
               
               Cow position:chr9:64140729-64140548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:241-431
               
               
               Cow position:chr9:12773529-12773715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:241-431
               
               
               Cow position:chr9:34707475-34707287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:241-439
               
               
               Cow position:chr9:49402483-49402684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:241-442
               
               
               Cow position:chr9:6954418-6954213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:241-442
               
               
               Cow position:chr9:16300739-16300533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:241-445
               
               
               Cow position:chr9:20815701-20815904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:241-451
               
               
               Cow position:chr9:1729852-1729628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:241-489
               
               
               Cow position:chr9:58452235-58451990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:241-492
               
               
               Cow position:chr9:56032482-56032227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):87, 181

               
               
               Conread position:241-494
               
               
               Cow position:chr9:6934246-6933980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 158

               
               
               Conread position:241-494
               
               
               Cow position:chr9:36843618-36843880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 212

               
               
               Conread position:241-494
               
               
               Cow position:chr9:38792850-38793107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:242-398
               
               
               Cow position:chr9:21780759-21780915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:242-411
               
               
               Cow position:chr9:8592594-8592423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr9:17769157-17769322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:242-426
               
               
               Cow position:chr9:5187024-5186847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):177, 59

               
               
               Conread position:242-432
               
               
               Cow position:chr9:26394512-26394324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):169, 77

               
               
               Conread position:242-442
               
               
               Cow position:chr9:11123644-11123449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:242-442
               
               
               Cow position:chr9:12226149-12225942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):67, 121

               
               
               Conread position:242-487
               
               
               Cow position:chr9:9686582-9686327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):50, 182

               
               
               Conread position:242-492
               
               
               Cow position:chr9:20847782-20848023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):178, 21

               
               
               Conread position:242-494
               
               
               Cow position:chr9:52267926-52267663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 164

               
               
               Conread position:244-414
               
               
               Cow position:chr9:52518983-52518819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:244-417
               
               
               Cow position:chr9:31346787-31346959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:244-424
               
               
               Cow position:chr9:55807472-55807649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:244-441
               
               
               Cow position:chr9:5835988-5836189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:244-442
               
               
               Cow position:chr9:47214712-47214509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:244-446
               
               
               Cow position:chr9:3198342-3198152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:244-494
               
               
               Cow position:chr9:61738759-61739019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:245-414
               
               
               Cow position:chr9:61909223-61909395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:245-417
               
               
               Cow position:chr9:54986322-54986145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:245-422
               
               
               Cow position:chr9:45749271-45749452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:245-479
               
               
               Cow position:chr9:22443784-22443559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):201, 69

               
               
               Conread position:245-493
               
               
               Cow position:chr9:9815252-9815507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:245-493
               
               
               Cow position:chr9:46981383-46981138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):174, 25

               
               
               Conread position:246-417
               
               
               Cow position:chr9:14357252-14357425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:246-430
               
               
               Cow position:chr9:41470261-41470074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:246-494
               
               
               Cow position:chr9:28263356-28263611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr9:37955333-37955161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr9:28342813-28342661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:248-405
               
               
               Cow position:chr9:55529645-55529797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 66

               
               
               Conread position:248-413
               
               
               Cow position:chr9:11209611-11209439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:248-417
               
               
               Cow position:chr9:7101276-7101452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:248-417
               
               
               Cow position:chr9:25400345-25400189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr9:40603509-40603678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr9:52998536-52998370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:248-426
               
               
               Cow position:chr9:1712866-1712686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:248-431
               
               
               Cow position:chr9:44944631-44944453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):171, 54

               
               
               Conread position:248-442
               
               
               Cow position:chr9:22165875-22165677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:248-442
               
               
               Cow position:chr9:32955852-32955649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:248-442
               
               
               Cow position:chr9:41964890-41964699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):174, 30

               
               
               Conread position:248-475
               
               
               Cow position:chr9:64310937-64310717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):67, 154

               
               
               Conread position:248-490
               
               
               Cow position:chr9:5164143-5163894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:248-490
               
               
               Cow position:chr9:29185298-29185043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:248-494
               
               
               Cow position:chr9:10010654-10010895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:248-494
               
               
               Cow position:chr9:21080415-21080656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:248-494
               
               
               Cow position:chr9:34958210-34957959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:249-397
               
               
               Cow position:chr9:11200097-11199947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:249-417
               
               
               Cow position:chr9:3185972-3186136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:249-472
               
               
               Cow position:chr9:30402586-30402357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:249-488
               
               
               Cow position:chr9:37016742-37016984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:249-494
               
               
               Cow position:chr9:12910557-12910308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):170, 74

               
               
               Conread position:250-387
               
               
               Cow position:chr9:31514091-31513952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:250-399
               
               
               Cow position:chr9:18163513-18163363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr9:48115527-48115689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-440
               
               
               Cow position:chr9:7859794-7859603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:250-444
               
               
               Cow position:chr9:18216068-18215872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:250-493
               
               
               Cow position:chr9:55288045-55287799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):150, 66

               
               
               Conread position:250-494
               
               
               Cow position:chr9:5469713-5469956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:250-494
               
               
               Cow position:chr9:29195188-29194929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 249

               
               
               Conread position:250-494
               
               
               Cow position:chr9:29339468-29339229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):180, 42

               
               
               Conread position:250-494
               
               
               Cow position:chr9:38846497-38846250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 165

               
               
               Conread position:250-494
               
               
               Cow position:chr9:56772905-56773174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:252-407
               
               
               Cow position:chr9:44261654-44261506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:252-417
               
               
               Cow position:chr9:58369147-58368987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:252-443
               
               
               Cow position:chr9:24652245-24652441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:252-494
               
               
               Cow position:chr9:29006405-29006656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):167, 54

               
               
               Conread position:255-442
               
               
               Cow position:chr9:20637224-20637409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:255-494
               
               
               Cow position:chr9:23388831-23388584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):67, 218

               
               
               Conread position:256-414
               
               
               Cow position:chr9:55495139-55494979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:258-442
               
               
               Cow position:chr9:16811803-16811618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:261-384
               
               
               Cow position:chr9:39142513-39142387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:261-496
               
               
               Cow position:chr9:33120036-33119790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:262-494
               
               
               Cow position:chr9:57897247-57897025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):157, 43

               
               
               Conread position:263-412
               
               
               Cow position:chr9:54630170-54630315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:264-431
               
               
               Cow position:chr9:43202193-43202359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):155, 54

               
               
               Conread position:267-442
               
               
               Cow position:chr9:20416653-20416474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:268-494
               
               
               Cow position:chr9:13205710-13205472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:269-442
               
               
               Cow position:chr9:39758375-39758554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:269-493
               
               
               Cow position:chr9:44832185-44831960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:269-494
               
               
               Cow position:chr9:9654445-9654218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:270-440
               
               
               Cow position:chr9:52258202-52258033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:271-417
               
               
               Cow position:chr9:44093220-44093072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:271-494
               
               
               Cow position:chr9:17741076-17740854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:274-390
               
               
               Cow position:chr9:26683563-26683447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-390
               
               
               Cow position:chr9:37062461-37062577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-416
               
               
               Cow position:chr9:11161197-11161338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:274-490
               
               
               Cow position:chr9:56011371-56011588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):145, 42

               
               
               Conread position:274-494
               
               
               Cow position:chr9:42446127-42445886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 211

               
               
               Conread position:279-469
               
               
               Cow position:chr9:49545492-49545302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):156, 133

               
               
               Conread position:281-494
               
               
               Cow position:chr9:6596350-6596141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:283-494
               
               
               Cow position:chr9:41394773-41394555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:283-496
               
               
               Cow position:chr9:44770323-44770102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:285-489
               
               
               Cow position:chr9:51204600-51204822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:295-494
               
               
               Cow position:chr9:54528399-54528605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:302-411
               
               
               Cow position:chr9:46190037-46190146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr9:6293489-6293631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr9:8562717-8562856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 99

               
               
               Conread position:302-442
               
               
               Cow position:chr9:17310667-17310529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:302-442
               
               
               Cow position:chr9:31814491-31814349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:302-442
               
               
               Cow position:chr9:55354506-55354647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-471
               
               
               Cow position:chr9:16137447-16137278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:302-490
               
               
               Cow position:chr9:59386874-59386680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 192

               
               
               Conread position:302-493
               
               
               Cow position:chr9:9406158-9405956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr9:3782265-3782453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):167, 55

               
               
               Conread position:302-494
               
               
               Cow position:chr9:5594397-5594595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:302-494
               
               
               Cow position:chr9:21888067-21888260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):141, 21

               
               
               Conread position:302-494
               
               
               Cow position:chr9:50081145-50080953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 143

               
               
               Conread position:303-442
               
               
               Cow position:chr9:55084405-55084268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr9:18217203-18217006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:303-494
               
               
               Cow position:chr9:26310401-26310602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 171

               
               
               Conread position:304-485
               
               
               Cow position:chr9:50139182-50139371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:305-473
               
               
               Cow position:chr9:38645446-38645278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 77

               
               
               Conread position:305-492
               
               
               Cow position:chr9:53751062-53750863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:307-490
               
               
               Cow position:chr9:43342231-43342419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 130

               
               
               Conread position:307-494
               
               
               Cow position:chr9:3738324-3738128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 180

               
               
               Conread position:307-494
               
               
               Cow position:chr9:19758621-19758802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:308-427
               
               
               Cow position:chr9:23403719-23403836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:308-494
               
               
               Cow position:chr9:28354418-28354614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:309-430
               
               
               Cow position:chr9:26277731-26277852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:315-429
               
               
               Cow position:chr9:53045438-53045323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:319-494
               
               
               Cow position:chr9:43870887-43871072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:324-456
               
               
               Cow position:chr9:35793594-35793729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-481
               
               
               Cow position:chr9:30780035-30780195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:324-494
               
               
               Cow position:chr9:5219255-5219075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 145

               
               
               Conread position:324-494
               
               
               Cow position:chr9:5763713-5763538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:325-494
               
               
               Cow position:chr9:49293225-49293052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:325-494
               
               
               Cow position:chr9:52839961-52839793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:328-494
               
               
               Cow position:chr9:6685820-6685982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:329-494
               
               
               Cow position:chr9:32982153-32981978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:329-494
               
               
               Cow position:chr9:60027119-60027295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 146

               
               
               Conread position:331-494
               
               
               Cow position:chr9:6879703-6879866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):87, 99

               
               
               Conread position:332-494
               
               
               Cow position:chr9:62908094-62907936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:200-496
               
               
               Cow position:chrX:41526266-41526563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:207-494
               
               
               Cow position:chrX:29050499-29050209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):133, 70

               
               
               Conread position:214-494
               
               
               Cow position:chrX:42855715-42855415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:216-490
               
               
               Cow position:chrX:1466412-1466127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:216-493
               
               
               Cow position:chrX:4996837-4996559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 234

               
               
               Conread position:216-494
               
               
               Cow position:chrX:21986054-21986330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 25

               
               
               Conread position:217-494
               
               
               Cow position:chrX:38654183-38654470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 182

               
               
               Conread position:218-414
               
               
               Cow position:chrX:41454707-41454905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 129

               
               
               Conread position:218-494
               
               
               Cow position:chrX:38964344-38964067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:219-417
               
               
               Cow position:chrX:5097551-5097753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:219-494
               
               
               Cow position:chrX:11325859-11326138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:220-371
               
               
               Cow position:chrX:26956317-26956460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:220-399
               
               
               Cow position:chrX:11602243-11602419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:220-399
               
               
               Cow position:chrX:39642384-39642558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:221-385
               
               
               Cow position:chrX:44816572-44816736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:222-407
               
               
               Cow position:chrX:48118494-48118677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 102

               
               
               Conread position:222-411
               
               
               Cow position:chrX:27415347-27415528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:222-494
               
               
               Cow position:chrX:44055043-44054769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:223-407
               
               
               Cow position:chrX:17524142-17524328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:223-412
               
               
               Cow position:chrX:44798809-44798997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:223-417
               
               
               Cow position:chrX:17293197-17293001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:223-426
               
               
               Cow position:chrX:5487704-5487896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:223-442
               
               
               Cow position:chrX:34565526-34565306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:223-442
               
               
               Cow position:chrX:36356345-36356132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:223-494
               
               
               Cow position:chrX:32821278-32820992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:223-494
               
               
               Cow position:chrX:34792082-34792346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):193, 40

               
               
               Conread position:224-333
               
               
               Cow position:chrX:11717484-11717593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-489
               
               
               Cow position:chrX:22482449-22482732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:224-494
               
               
               Cow position:chrX:41871301-41871027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:225-397
               
               
               Cow position:chrX:30041848-30042024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:225-417
               
               
               Cow position:chrX:11454413-11454232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 77

               
               
               Conread position:225-417
               
               
               Cow position:chrX:44834414-44834606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:225-424
               
               
               Cow position:chrX:2314380-2314581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):90, 5

               
               
               Conread position:225-431
               
               
               Cow position:chrX:10251963-10252167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:225-440
               
               
               Cow position:chrX:16984873-16984663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:225-440
               
               
               Cow position:chrX:32942841-32943054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:225-442
               
               
               Cow position:chrX:27175238-27175023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:225-442
               
               
               Cow position:chrX:29467543-29467758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):194, 85

               
               
               Conread position:225-442
               
               
               Cow position:chrX:38302054-38301829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-480
               
               
               Cow position:chrX:20339656-20339915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:225-490
               
               
               Cow position:chrX:28940483-28940212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 265

               
               
               Conread position:225-494
               
               
               Cow position:chrX:6414273-6414010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:225-494
               
               
               Cow position:chrX:13913313-13913029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:225-494
               
               
               Cow position:chrX:25037231-25036949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:226-410
               
               
               Cow position:chrX:34398545-34398731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:226-411
               
               
               Cow position:chrX:12981-12802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:226-411
               
               
               Cow position:chrX:48822104-48822290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-494
               
               
               Cow position:chrX:4109423-4109152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:226-494
               
               
               Cow position:chrX:34532748-34532481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):193, 17

               
               
               Conread position:227-310
               
               
               Cow position:chrX:31829206-31829288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:227-312
               
               
               Cow position:chrX:42161085-42160998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:227-316
               
               
               Cow position:chrX:36069474-36069385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-317
               
               
               Cow position:chrX:25282777-25282867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-340
               
               
               Cow position:chrX:38080385-38080270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:227-351
               
               
               Cow position:chrX:26625243-26625360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:227-361
               
               
               Cow position:chrX:13893043-13892919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-364
               
               
               Cow position:chrX:10479987-10479848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:227-370
               
               
               Cow position:chrX:38726907-38727046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:227-377
               
               
               Cow position:chrX:1996214-1996366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:227-379
               
               
               Cow position:chrX:40108107-40108259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):107, 91

               
               
               Conread position:227-388
               
               
               Cow position:chrX:1571357-1571514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:227-391
               
               
               Cow position:chrX:45657698-45657868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-393
               
               
               Cow position:chrX:39419484-39419644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-397
               
               
               Cow position:chrX:41435305-41435483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 149

               
               
               Conread position:227-400
               
               
               Cow position:chrX:47431305-47431475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:227-406
               
               
               Cow position:chrX:51665-51844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 99

               
               
               Conread position:227-406
               
               
               Cow position:chrX:17525640-17525810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:227-406
               
               
               Cow position:chrX:32215468-32215285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:227-407
               
               
               Cow position:chrX:8759860-8759682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:227-411
               
               
               Cow position:chrX:46068525-46068707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:227-417
               
               
               Cow position:chrX:12212901-12212721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:227-417
               
               
               Cow position:chrX:19717748-19717567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:227-417
               
               
               Cow position:chrX:35409991-35409798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:227-417
               
               
               Cow position:chrX:37751874-37752060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:227-417
               
               
               Cow position:chrX:39179997-39180187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:227-417
               
               
               Cow position:chrX:43050307-43050115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 143

               
               
               Conread position:227-419
               
               
               Cow position:chrX:11529575-11529390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:227-422
               
               
               Cow position:chrX:34270798-34270602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 69

               
               
               Conread position:227-424
               
               
               Cow position:chrX:4268833-4269024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:227-424
               
               
               Cow position:chrX:42331510-42331325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:227-426
               
               
               Cow position:chrX:34991598-34991400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):192, 90

               
               
               Conread position:227-430
               
               
               Cow position:chrX:18439234-18439028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:227-440
               
               
               Cow position:chrX:38587607-38587821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:227-442
               
               
               Cow position:chrX:19018591-19018811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-442
               
               
               Cow position:chrX:20345688-20345473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:227-442
               
               
               Cow position:chrX:47079865-47079647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:227-443
               
               
               Cow position:chrX:35659031-35658818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:227-444
               
               
               Cow position:chrX:38968132-38967906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 142

               
               
               Conread position:227-446
               
               
               Cow position:chrX:20340421-20340627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:227-456
               
               
               Cow position:chrX:32877142-32877370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:227-463
               
               
               Cow position:chrX:42480068-42479828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:227-472
               
               
               Cow position:chrX:6267907-6267658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:227-490
               
               
               Cow position:chrX:17956927-17956661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 162

               
               
               Conread position:227-491
               
               
               Cow position:chrX:12979598-12979872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:227-492
               
               
               Cow position:chrX:22392750-22393022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:227-492
               
               
               Cow position:chrX:27431687-27431950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-494
               
               
               Cow position:chrX:6599537-6599822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-494
               
               
               Cow position:chrX:13147221-13146943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 142

               
               
               Conread position:227-494
               
               
               Cow position:chrX:13177247-13177506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:227-494
               
               
               Cow position:chrX:20584549-20584286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):192, 77

               
               
               Conread position:227-494
               
               
               Cow position:chrX:24749324-24749049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 72

               
               
               Conread position:227-494
               
               
               Cow position:chrX:29230244-29229972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):77, 214

               
               
               Conread position:227-494
               
               
               Cow position:chrX:34315764-34315478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:227-494
               
               
               Cow position:chrX:34504816-34505089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):157, 79

               
               
               Conread position:227-494
               
               
               Cow position:chrX:34836836-34837096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:227-494
               
               
               Cow position:chrX:38853447-38853159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:227-494
               
               
               Cow position:chrX:43115386-43115114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):189, 181

               
               
               Conread position:227-494
               
               
               Cow position:chrX:45110888-45110618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):182, 85

               
               
               Conread position:227-494
               
               
               Cow position:chrX:48118216-48118480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 118

               
               
               Conread position:227-496
               
               
               Cow position:chrX:1087911-1088180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:227-496
               
               
               Cow position:chrX:15006922-15007189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):187, 73

               
               
               Conread position:228-316
               
               
               Cow position:chrX:616003-616091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-393
               
               
               Cow position:chrX:35509443-35509609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:228-398
               
               
               Cow position:chrX:23182731-23182918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:228-399
               
               
               Cow position:chrX:3494813-3494981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):7, 81

               
               
               Conread position:228-413
               
               
               Cow position:chrX:48372268-48372445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-417
               
               
               Cow position:chrX:42875444-42875258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-426
               
               
               Cow position:chrX:44094135-44094324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:228-492
               
               
               Cow position:chrX:36976184-36975914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:228-494
               
               
               Cow position:chrX:35224512-35224258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):191, 74

               
               
               Conread position:228-494
               
               
               Cow position:chrX:40826514-40826789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:229-406
               
               
               Cow position:chrX:40567840-40567678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:229-411
               
               
               Cow position:chrX:41790192-41790377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:229-417
               
               
               Cow position:chrX:1960190-1960379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):90, 78

               
               
               Conread position:229-442
               
               
               Cow position:chrX:4559969-4559759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:229-442
               
               
               Cow position:chrX:32574551-32574337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:229-494
               
               
               Cow position:chrX:152140-151867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:229-494
               
               
               Cow position:chrX:14973522-14973778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):217, 77

               
               
               Conread position:230-342
               
               
               Cow position:chrX:33865063-33865175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-379
               
               
               Cow position:chrX:47979532-47979381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:230-382
               
               
               Cow position:chrX:42311886-42311745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:230-385
               
               
               Cow position:chrX:13135319-13135476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:230-387
               
               
               Cow position:chrX:11670921-11670762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-389
               
               
               Cow position:chrX:231792-231944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:230-389
               
               
               Cow position:chrX:36961943-36961790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:230-389
               
               
               Cow position:chrX:42506712-42506875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:230-391
               
               
               Cow position:chrX:42994830-42994661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:230-399
               
               
               Cow position:chrX:4750104-4750268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:230-399
               
               
               Cow position:chrX:6640658-6640491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:230-399
               
               
               Cow position:chrX:37867668-37867496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-400
               
               
               Cow position:chrX:2206356-2206536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:230-406
               
               
               Cow position:chrX:23497463-23497634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-406
               
               
               Cow position:chrX:41878703-41878877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:230-406
               
               
               Cow position:chrX:48237051-48236876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:230-411
               
               
               Cow position:chrX:41363616-41363807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:230-414
               
               
               Cow position:chrX:597244-597425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:230-414
               
               
               Cow position:chrX:37867488-37867302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 125

               
               
               Conread position:230-416
               
               
               Cow position:chrX:4169794-4169984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:230-416
               
               
               Cow position:chrX:45929605-45929417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-416
               
               
               Cow position:chrX:48474139-48473954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:230-417
               
               
               Cow position:chrX:11781480-11781299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:230-417
               
               
               Cow position:chrX:11844002-11844195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:230-417
               
               
               Cow position:chrX:15546115-15545928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:230-417
               
               
               Cow position:chrX:17498557-17498368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:230-417
               
               
               Cow position:chrX:18030182-18030371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:230-417
               
               
               Cow position:chrX:18111613-18111424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:230-417
               
               
               Cow position:chrX:42461393-42461572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:230-417
               
               
               Cow position:chrX:45759904-45759717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:230-417
               
               
               Cow position:chrX:46793516-46793700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:230-424
               
               
               Cow position:chrX:30672151-30672358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:230-431
               
               
               Cow position:chrX:8327139-8326935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-435
               
               
               Cow position:chrX:46910042-46909842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:230-438
               
               
               Cow position:chrX:32867104-32866899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):189, 75

               
               
               Conread position:230-439
               
               
               Cow position:chrX:34222947-34222739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:230-442
               
               
               Cow position:chrX:3806912-3806702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:230-442
               
               
               Cow position:chrX:4467186-4466987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:230-442
               
               
               Cow position:chrX:16323781-16323994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 182

               
               
               Conread position:230-442
               
               
               Cow position:chrX:17231971-17231755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-442
               
               
               Cow position:chrX:25815665-25815881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:230-442
               
               
               Cow position:chrX:26979557-26979769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:230-442
               
               
               Cow position:chrX:28068085-28067870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:230-442
               
               
               Cow position:chrX:40320640-40320426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:230-442
               
               
               Cow position:chrX:48071396-48071181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:230-443
               
               
               Cow position:chrX:24170491-24170710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 142

               
               
               Conread position:230-446
               
               
               Cow position:chrX:27705821-27705602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-466
               
               
               Cow position:chrX:2936187-2935952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:230-468
               
               
               Cow position:chrX:45699746-45699981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):213, 74

               
               
               Conread position:230-483
               
               
               Cow position:chrX:30962641-30962900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:230-485
               
               
               Cow position:chrX:35269090-35268836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:230-488
               
               
               Cow position:chrX:31442605-31442863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-490
               
               
               Cow position:chrX:5118264-5118537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:230-490
               
               
               Cow position:chrX:7278140-7277879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:230-490
               
               
               Cow position:chrX:27446917-27446662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:230-492
               
               
               Cow position:chrX:12290952-12290686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):131, 127

               
               
               Conread position:230-492
               
               
               Cow position:chrX:17949258-17949523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:230-492
               
               
               Cow position:chrX:48004080-48003811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:230-493
               
               
               Cow position:chrX:6407780-6407507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):15, 135

               
               
               Conread position:230-493
               
               
               Cow position:chrX:22813299-22813030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 229

               
               
               Conread position:230-493
               
               
               Cow position:chrX:44192208-44192486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:230-494
               
               
               Cow position:chrX:4296590-4296857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 217

               
               
               Conread position:230-494
               
               
               Cow position:chrX:6544479-6544217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:230-494
               
               
               Cow position:chrX:11656312-11656054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:230-494
               
               
               Cow position:chrX:14955533-14955802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:230-494
               
               
               Cow position:chrX:21642247-21642516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 247

               
               
               Conread position:230-494
               
               
               Cow position:chrX:24332011-24331741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:230-494
               
               
               Cow position:chrX:24365588-24365863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:230-494
               
               
               Cow position:chrX:26881328-26881606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:230-494
               
               
               Cow position:chrX:30133090-30133358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:230-494
               
               
               Cow position:chrX:33001132-33000865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):112, 80

               
               
               Conread position:230-494
               
               
               Cow position:chrX:33654609-33654875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 219

               
               
               Conread position:230-494
               
               
               Cow position:chrX:34377173-34376908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:230-494
               
               
               Cow position:chrX:34441219-34441489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:230-494
               
               
               Cow position:chrX:35885498-35885765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):193, 84

               
               
               Conread position:230-494
               
               
               Cow position:chrX:36367697-36367980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:230-494
               
               
               Cow position:chrX:37780878-37781149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:230-494
               
               
               Cow position:chrX:45977158-45976884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 44

               
               
               Conread position:230-494
               
               
               Cow position:chrX:46546639-46546915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:230-496
               
               
               Cow position:chrX:34503160-34502882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:230-496
               
               
               Cow position:chrX:40035208-40035483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:231-379
               
               
               Cow position:chrX:6907174-6907324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:231-386
               
               
               Cow position:chrX:17744854-17744700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):144, 87

               
               
               Conread position:231-389
               
               
               Cow position:chrX:47730714-47730556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:231-393
               
               
               Cow position:chrX:4486791-4486954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):81, 91

               
               
               Conread position:231-399
               
               
               Cow position:chrX:1102246-1102081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:231-408
               
               
               Cow position:chrX:27170967-27170794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:231-414
               
               
               Cow position:chrX:41166596-41166776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-417
               
               
               Cow position:chrX:16555990-16556171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-417
               
               
               Cow position:chrX:24054894-24054723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 68

               
               
               Conread position:231-417
               
               
               Cow position:chrX:45843359-45843548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:231-418
               
               
               Cow position:chrX:42760486-42760297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:231-422
               
               
               Cow position:chrX:11654000-11653811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:231-430
               
               
               Cow position:chrX:33854993-33855187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:231-431
               
               
               Cow position:chrX:46079321-46079116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:231-441
               
               
               Cow position:chrX:38094293-38094495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:231-442
               
               
               Cow position:chrX:1122314-1122523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:231-442
               
               
               Cow position:chrX:15146966-15147173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:231-442
               
               
               Cow position:chrX:27145832-27145624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 89

               
               
               Conread position:231-443
               
               
               Cow position:chrX:24633929-24633703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:231-443
               
               
               Cow position:chrX:27074818-27075032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:231-469
               
               
               Cow position:chrX:5679697-5679935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 184

               
               
               Conread position:231-485
               
               
               Cow position:chrX:32208594-32208840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):188, 55

               
               
               Conread position:231-490
               
               
               Cow position:chrX:11614908-11614666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):210, 37

               
               
               Conread position:231-491
               
               
               Cow position:chrX:45429798-45430057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):185, 17

               
               
               Conread position:231-492
               
               
               Cow position:chrX:12437050-12437306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):188, 68

               
               
               Conread position:231-494
               
               
               Cow position:chrX:7351534-7351263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:231-494
               
               
               Cow position:chrX:25441325-25441568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):219, 36

               
               
               Conread position:231-494
               
               
               Cow position:chrX:40685096-40685369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:231-494
               
               
               Cow position:chrX:44961988-44961711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:232-370
               
               
               Cow position:chrX:22284915-22284783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-379
               
               
               Cow position:chrX:35390531-35390675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 47

               
               
               Conread position:232-379
               
               
               Cow position:chrX:37177099-37176958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:232-381
               
               
               Cow position:chrX:43028461-43028314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:232-388
               
               
               Cow position:chrX:35029704-35029851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:232-392
               
               
               Cow position:chrX:4403550-4403388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:232-392
               
               
               Cow position:chrX:25930872-25930708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:232-397
               
               
               Cow position:chrX:28850945-28850789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:232-397
               
               
               Cow position:chrX:40556231-40556393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 65

               
               
               Conread position:232-417
               
               
               Cow position:chrX:20666670-20666855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:232-417
               
               
               Cow position:chrX:23136963-23136786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:232-417
               
               
               Cow position:chrX:42894154-42893972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-431
               
               
               Cow position:chrX:23358885-23359080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):187, 87

               
               
               Conread position:232-442
               
               
               Cow position:chrX:908173-907966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 99

               
               
               Conread position:232-442
               
               
               Cow position:chrX:5637947-5638149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:232-442
               
               
               Cow position:chrX:31744783-31744985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):184, 67

               
               
               Conread position:232-472
               
               
               Cow position:chrX:26843034-26843278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 133

               
               
               Conread position:232-490
               
               
               Cow position:chrX:4152812-4153069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:232-492
               
               
               Cow position:chrX:22075027-22074758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 33

               
               
               Conread position:232-493
               
               
               Cow position:chrX:5919719-5919453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:232-493
               
               
               Cow position:chrX:35986047-35985781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:232-493
               
               
               Cow position:chrX:42927598-42927856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:232-494
               
               
               Cow position:chrX:9650794-9651064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:232-494
               
               
               Cow position:chrX:20957469-20957210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:232-494
               
               
               Cow position:chrX:29541996-29542257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:232-494
               
               
               Cow position:chrX:34314253-34313991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-494
               
               
               Cow position:chrX:34412080-34411804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:232-494
               
               
               Cow position:chrX:37072618-37072356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:232-494
               
               
               Cow position:chrX:41674329-41674072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:232-494
               
               
               Cow position:chrX:42246949-42247224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-494
               
               
               Cow position:chrX:45968369-45968114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):190, 36

               
               
               Conread position:232-496
               
               
               Cow position:chrX:47345562-47345294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:233-316
               
               
               Cow position:chrX:11501127-11501044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-380
               
               
               Cow position:chrX:31279696-31279841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-399
               
               
               Cow position:chrX:4444659-4444485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:233-399
               
               
               Cow position:chrX:29681887-29682047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:233-411
               
               
               Cow position:chrX:40116699-40116534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:233-411
               
               
               Cow position:chrX:42432283-42432456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 78

               
               
               Conread position:233-414
               
               
               Cow position:chrX:20677911-20678093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:233-416
               
               
               Cow position:chrX:47191090-47191274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:233-417
               
               
               Cow position:chrX:27270600-27270421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 40

               
               
               Conread position:233-421
               
               
               Cow position:chrX:23485761-23485563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-430
               
               
               Cow position:chrX:15100210-15100018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:233-430
               
               
               Cow position:chrX:40649133-40648928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 195

               
               
               Conread position:233-442
               
               
               Cow position:chrX:32910328-32910124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):186, 80

               
               
               Conread position:233-442
               
               
               Cow position:chrX:38218944-38218734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):120, 85

               
               
               Conread position:233-445
               
               
               Cow position:chrX:40337142-40336928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):79, 170

               
               
               Conread position:233-452
               
               
               Cow position:chrX:23097987-23098195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:233-489
               
               
               Cow position:chrX:45598377-45598634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:233-490
               
               
               Cow position:chrX:1499885-1499631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:233-493
               
               
               Cow position:chrX:30337723-30337983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:233-494
               
               
               Cow position:chrX:296623-296357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):69, 114

               
               
               Conread position:233-494
               
               
               Cow position:chrX:6559225-6559483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:233-494
               
               
               Cow position:chrX:11633913-11633642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):87, 241

               
               
               Conread position:233-494
               
               
               Cow position:chrX:36866404-36866133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:234-343
               
               
               Cow position:chrX:41194135-41194023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:234-348
               
               
               Cow position:chrX:19161900-19162016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-361
               
               
               Cow position:chrX:783675-783546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-382
               
               
               Cow position:chrX:21310-21171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-390
               
               
               Cow position:chrX:25826910-25827062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:234-392
               
               
               Cow position:chrX:14900281-14900431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:234-396
               
               
               Cow position:chrX:41215553-41215389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:138
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:234-398
               
               
               Cow position:chrX:14135905-14135743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:234-399
               
               
               Cow position:chrX:32330401-32330230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-406
               
               
               Cow position:chrX:14925503-14925329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:234-407
               
               
               Cow position:chrX:40108283-40108462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:234-409
               
               
               Cow position:chrX:5915421-5915242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:234-411
               
               
               Cow position:chrX:46533074-46533253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-413
               
               
               Cow position:chrX:1101780-1101607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:234-413
               
               
               Cow position:chrX:23471638-23471816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:234-414
               
               
               Cow position:chrX:6634575-6634393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 129

               
               
               Conread position:234-417
               
               
               Cow position:chrX:6389309-6389127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:234-424
               
               
               Cow position:chrX:44123479-44123293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:234-425
               
               
               Cow position:chrX:6480365-6480559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):88, 181

               
               
               Conread position:234-426
               
               
               Cow position:chrX:11517749-11517941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:234-431
               
               
               Cow position:chrX:20583890-20583697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):185, 33

               
               
               Conread position:234-442
               
               
               Cow position:chrX:4327952-4328163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:234-442
               
               
               Cow position:chrX:16762998-16762791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):107, 80

               
               
               Conread position:234-442
               
               
               Cow position:chrX:27668732-27668938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 49

               
               
               Conread position:234-442
               
               
               Cow position:chrX:31729667-31729462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:234-442
               
               
               Cow position:chrX:42449783-42449994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:234-442
               
               
               Cow position:chrX:43008840-43008629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-443
               
               
               Cow position:chrX:35276216-35276005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:234-443
               
               
               Cow position:chrX:35285404-35285192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:234-446
               
               
               Cow position:chrX:34238956-34238734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:234-466
               
               
               Cow position:chrX:36391958-36392192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:234-484
               
               
               Cow position:chrX:12219376-12219124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 223

               
               
               Conread position:234-488
               
               
               Cow position:chrX:41941853-41941594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):85, 60

               
               
               Conread position:234-490
               
               
               Cow position:chrX:23089065-23088830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):236, 29

               
               
               Conread position:234-494
               
               
               Cow position:chrX:4289664-4289401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):177, 73

               
               
               Conread position:234-494
               
               
               Cow position:chrX:9251933-9252200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:234-494
               
               
               Cow position:chrX:14883727-14883996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):134, 79

               
               
               Conread position:234-494
               
               
               Cow position:chrX:19394785-19394514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 241

               
               
               Conread position:234-494
               
               
               Cow position:chrX:19469285-19469544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):185, 79

               
               
               Conread position:234-494
               
               
               Cow position:chrX:27306669-27306414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):182, 64

               
               
               Conread position:234-494
               
               
               Cow position:chrX:27393788-27394060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:234-494
               
               
               Cow position:chrX:29601598-29601868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):8, 240

               
               
               Conread position:234-494
               
               
               Cow position:chrX:31948704-31948975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:234-494
               
               
               Cow position:chrX:38560780-38560520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:234-494
               
               
               Cow position:chrX:39353002-39352742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):182, 69

               
               
               Conread position:234-494
               
               
               Cow position:chrX:41027390-41027118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:234-494
               
               
               Cow position:chrX:41238132-41238391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:234-494
               
               
               Cow position:chrX:42492291-42492555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:234-494
               
               
               Cow position:chrX:46072600-46072858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):185, 72

               
               
               Conread position:234-494
               
               
               Cow position:chrX:46588050-46587782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:235-328
               
               
               Cow position:chrX:38726165-38726072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-383
               
               
               Cow position:chrX:19356693-19356543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:235-387
               
               
               Cow position:chrX:34108129-34108282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:235-390
               
               
               Cow position:chrX:11674341-11674183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:235-397
               
               
               Cow position:chrX:10279103-10278936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:235-397
               
               
               Cow position:chrX:16801038-16801197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:235-397
               
               
               Cow position:chrX:41011118-41010964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 12

               
               
               Conread position:235-399
               
               
               Cow position:chrX:11589138-11589303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 66

               
               
               Conread position:235-399
               
               
               Cow position:chrX:44995729-44995562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:235-400
               
               
               Cow position:chrX:9451570-9451408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 74

               
               
               Conread position:235-405
               
               
               Cow position:chrX:34193851-34194023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:235-406
               
               
               Cow position:chrX:32747949-32747789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:235-406
               
               
               Cow position:chrX:33466851-33466681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:235-406
               
               
               Cow position:chrX:44040406-44040233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-414
               
               
               Cow position:chrX:14951124-14951304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:235-414
               
               
               Cow position:chrX:19203116-19203297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:235-414
               
               
               Cow position:chrX:27442309-27442490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-414
               
               
               Cow position:chrX:47100365-47100548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 130

               
               
               Conread position:235-416
               
               
               Cow position:chrX:1938242-1938061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):127, 122

               
               
               Conread position:235-417
               
               
               Cow position:chrX:43150660-43150477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:235-423
               
               
               Cow position:chrX:16763701-16763885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:235-425
               
               
               Cow position:chrX:10415023-10415216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-442
               
               
               Cow position:chrX:25207632-25207835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):121, 82

               
               
               Conread position:235-442
               
               
               Cow position:chrX:26205229-26205428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):120, 15

               
               
               Conread position:235-442
               
               
               Cow position:chrX:31515396-31515193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:235-442
               
               
               Cow position:chrX:35392076-35392274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:235-445
               
               
               Cow position:chrX:36283569-36283355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:235-458
               
               
               Cow position:chrX:29451316-29451546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:235-467
               
               
               Cow position:chrX:13122173-13121928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 133

               
               
               Conread position:235-490
               
               
               Cow position:chrX:4399347-4399089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):108, 112

               
               
               Conread position:235-490
               
               
               Cow position:chrX:29544657-29544909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):181, 38

               
               
               Conread position:235-493
               
               
               Cow position:chrX:33539380-33539136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):184, 38

               
               
               Conread position:235-494
               
               
               Cow position:chrX:4632625-4632889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:235-494
               
               
               Cow position:chrX:7722203-7721951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):171, 32

               
               
               Conread position:235-494
               
               
               Cow position:chrX:12095542-12095811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:235-494
               
               
               Cow position:chrX:15231430-15231697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-494
               
               
               Cow position:chrX:21593520-21593250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:235-494
               
               
               Cow position:chrX:38549676-38549409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:235-494
               
               
               Cow position:chrX:45502364-45502107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:235-494
               
               
               Cow position:chrX:46032499-46032758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:235-495
               
               
               Cow position:chrX:3580174-3579906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:236-417
               
               
               Cow position:chrX:41990895-41991088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:237-417
               
               
               Cow position:chrX:29478949-29478770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):105, 109

               
               
               Conread position:237-442
               
               
               Cow position:chrX:19761976-19761774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:238-431
               
               
               Cow position:chrX:17795205-17795012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):181, 17

               
               
               Conread position:238-441
               
               
               Cow position:chrX:35382816-35383015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:238-442
               
               
               Cow position:chrX:1175764-1175962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:238-442
               
               
               Cow position:chrX:39220314-39220099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:238-489
               
               
               Cow position:chrX:38642468-38642216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:238-493
               
               
               Cow position:chrX:44397237-44396981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 140

               
               
               Conread position:238-494
               
               
               Cow position:chrX:40269734-40269450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:239-494
               
               
               Cow position:chrX:4278893-4279155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:239-494
               
               
               Cow position:chrX:9634967-9635223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:240-364
               
               
               Cow position:chrX:15533986-15534113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:240-382
               
               
               Cow position:chrX:17929222-17929082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:240-389
               
               
               Cow position:chrX:40056003-40056143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-389
               
               
               Cow position:chrX:43059032-43059177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-392
               
               
               Cow position:chrX:28107070-28106918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:240-392
               
               
               Cow position:chrX:33678246-33678402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:240-397
               
               
               Cow position:chrX:48574130-48574291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 125

               
               
               Conread position:240-399
               
               
               Cow position:chrX:22552755-22552915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 28

               
               
               Conread position:240-399
               
               
               Cow position:chrX:26881855-26882016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-399
               
               
               Cow position:chrX:27202793-27202634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-406
               
               
               Cow position:chrX:23335751-23335919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-407
               
               
               Cow position:chrX:41199446-41199280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 80

               
               
               Conread position:240-410
               
               
               Cow position:chrX:13924085-13923917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:240-414
               
               
               Cow position:chrX:11762787-11762952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-414
               
               
               Cow position:chrX:19000351-19000175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:240-414
               
               
               Cow position:chrX:31983354-31983536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-417
               
               
               Cow position:chrX:8642269-8642092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:240-417
               
               
               Cow position:chrX:41453523-41453348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:240-425
               
               
               Cow position:chrX:41858660-41858845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:240-426
               
               
               Cow position:chrX:12972902-12972719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:240-427
               
               
               Cow position:chrX:876623-876807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:240-442
               
               
               Cow position:chrX:161624-161432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:240-442
               
               
               Cow position:chrX:5026475-5026276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:240-442
               
               
               Cow position:chrX:27511640-27511448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:240-442
               
               
               Cow position:chrX:40680839-40680634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-442
               
               
               Cow position:chrX:44339097-44339301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:240-442
               
               
               Cow position:chrX:46532266-46532475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-443
               
               
               Cow position:chrX:16836070-16836267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:240-472
               
               
               Cow position:chrX:22284063-22283830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:240-490
               
               
               Cow position:chrX:20168779-20168524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:240-492
               
               
               Cow position:chrX:40531802-40532080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:240-493
               
               
               Cow position:chrX:22115090-22115353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:240-494
               
               
               Cow position:chrX:5134698-5134437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:240-494
               
               
               Cow position:chrX:8917619-8917359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:240-494
               
               
               Cow position:chrX:9201767-9201512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:240-494
               
               
               Cow position:chrX:10516478-10516212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-494
               
               
               Cow position:chrX:27207018-27206771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:240-494
               
               
               Cow position:chrX:27508800-27509061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:240-494
               
               
               Cow position:chrX:42380888-42381140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:240-494
               
               
               Cow position:chrX:46022999-46022747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:240-494
               
               
               Cow position:chrX:48558970-48558709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:241-341
               
               
               Cow position:chrX:42216410-42216509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-385
               
               
               Cow position:chrX:37717945-37717800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:241-399
               
               
               Cow position:chrX:31489744-31489584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:241-410
               
               
               Cow position:chrX:47855200-47855034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-417
               
               
               Cow position:chrX:35681790-35681613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:241-431
               
               
               Cow position:chrX:7910850-7911041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:241-431
               
               
               Cow position:chrX:40046340-40046544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 175

               
               
               Conread position:241-442
               
               
               Cow position:chrX:20887426-20887619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:241-494
               
               
               Cow position:chrX:8869181-8869442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:241-494
               
               
               Cow position:chrX:26493230-26492969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:242-393
               
               
               Cow position:chrX:25420546-25420401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:242-399
               
               
               Cow position:chrX:42087048-42086891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:242-417
               
               
               Cow position:chrX:13347491-13347319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:242-430
               
               
               Cow position:chrX:39290577-39290391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:242-441
               
               
               Cow position:chrX:44991195-44991392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):181, 75

               
               
               Conread position:242-442
               
               
               Cow position:chrX:37956067-37955867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:242-494
               
               
               Cow position:chrX:25035159-25035417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:243-493
               
               
               Cow position:chrX:31436690-31436439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 83

               
               
               Conread position:244-442
               
               
               Cow position:chrX:31480186-31479991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:245-392
               
               
               Cow position:chrX:3507783-3507638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:245-407
               
               
               Cow position:chrX:42282796-42282633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 130

               
               
               Conread position:245-437
               
               
               Cow position:chrX:4092141-4091947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:245-442
               
               
               Cow position:chrX:20152067-20151880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:245-472
               
               
               Cow position:chrX:27261409-27261180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:245-490
               
               
               Cow position:chrX:4645695-4645946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:246-490
               
               
               Cow position:chrX:34554942-34554692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:247-424
               
               
               Cow position:chrX:13868921-13868740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:247-465
               
               
               Cow position:chrX:42836398-42836177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:247-487
               
               
               Cow position:chrX:34420953-34420714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 113

               
               
               Conread position:247-493
               
               
               Cow position:chrX:34544003-34543743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:247-493
               
               
               Cow position:chrX:47061603-47061357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):172, 12

               
               
               Conread position:248-387
               
               
               Cow position:chrX:44702849-44702990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:248-392
               
               
               Cow position:chrX:39094117-39094251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:248-406
               
               
               Cow position:chrX:11813290-11813129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:248-414
               
               
               Cow position:chrX:31986356-31986525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:248-415
               
               
               Cow position:chrX:10237697-10237865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:248-422
               
               
               Cow position:chrX:30840757-30840587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:248-442
               
               
               Cow position:chrX:8731310-8731114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 155

               
               
               Conread position:248-442
               
               
               Cow position:chrX:10831265-10831470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:248-442
               
               
               Cow position:chrX:41809959-41810148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):171, 64

               
               
               Conread position:248-465
               
               
               Cow position:chrX:7337063-7336839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:248-493
               
               
               Cow position:chrX:27228345-27228091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:249-399
               
               
               Cow position:chrX:4768943-4768796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:249-417
               
               
               Cow position:chrX:37749777-37749937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:249-426
               
               
               Cow position:chrX:30824200-30824025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):170, 65

               
               
               Conread position:249-440
               
               
               Cow position:chrX:46069970-46070148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):170, 59

               
               
               Conread position:249-480
               
               
               Cow position:chrX:32420426-32420194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 97

               
               
               Conread position:250-396
               
               
               Cow position:chrX:4366559-4366407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:250-417
               
               
               Cow position:chrX:25286508-25286675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:251-424
               
               
               Cow position:chrX:47755831-47756002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):169, 67

               
               
               Conread position:251-444
               
               
               Cow position:chrX:28877953-28878156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:251-494
               
               
               Cow position:chrX:46291354-46291100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:253-389
               
               
               Cow position:chrX:25048891-25049027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:254-492
               
               
               Cow position:chrX:35543094-35542860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):157, 64

               
               
               Conread position:255-417
               
               
               Cow position:chrX:19795300-19795458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):129, 98

               
               
               Conread position:255-493
               
               
               Cow position:chrX:31294360-31294600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 194

               
               
               Conread position:260-494
               
               
               Cow position:chrX:41068924-41068683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):159, 55

               
               
               Conread position:262-424
               
               
               Cow position:chrX:44660386-44660551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:263-415
               
               
               Cow position:chrX:11859335-11859489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:265-494
               
               
               Cow position:chrX:14275549-14275784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):154, 50

               
               
               Conread position:265-494
               
               
               Cow position:chrX:21672761-21672518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:266-490
               
               
               Cow position:chrX:169343-169579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):56, 160

               
               
               Conread position:266-494
               
               
               Cow position:chrX:13647586-13647823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 208

               
               
               Conread position:268-442
               
               
               Cow position:chrX:41862556-41862384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:268-496
               
               
               Cow position:chrX:23188593-23188817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):167, 47

               
               
               Conread position:270-432
               
               
               Cow position:chrX:29687981-29688145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:273-422
               
               
               Cow position:chrX:4515879-4515734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:274-397
               
               
               Cow position:chrX:21288415-21288541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:274-411
               
               
               Cow position:chrX:40543338-40543469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:274-442
               
               
               Cow position:chrX:28865814-28865982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:274-459
               
               
               Cow position:chrX:28923210-28923036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):176, 41

               
               
               Conread position:274-494
               
               
               Cow position:chrX:31252598-31252380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:281-494
               
               
               Cow position:chrX:18964642-18964863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 186

               
               
               Conread position:283-494
               
               
               Cow position:chrX:16575294-16575085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 163

               
               
               Conread position:286-442
               
               
               Cow position:chrX:23113461-23113305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:290-494
               
               
               Cow position:chrX:45670399-45670183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 197

               
               
               Conread position:292-404
               
               
               Cow position:chrX:35019423-35019311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:295-438
               
               
               Cow position:chrX:37062416-37062561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:296-494
               
               
               Cow position:chrX:38006603-38006802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:296-494
               
               
               Cow position:chrX:45414142-45414338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:299-494
               
               
               Cow position:chrX:6690096-6690294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 185

               
               
               Conread position:301-494
               
               
               Cow position:chrX:32977922-32978115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:302-431
               
               
               Cow position:chrX:41939985-41939854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:302-432
               
               
               Cow position:chrX:27667587-27667455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:302-440
               
               
               Cow position:chrX:23498519-23498655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 98

               
               
               Conread position:302-469
               
               
               Cow position:chrX:36848416-36848589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:302-472
               
               
               Cow position:chrX:753317-753145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 147

               
               
               Conread position:302-492
               
               
               Cow position:chrX:45846264-45846063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:302-494
               
               
               Cow position:chrX:616097-616300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:302-494
               
               
               Cow position:chrX:5135359-5135563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:302-494
               
               
               Cow position:chrX:17726137-17725936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:302-494
               
               
               Cow position:chrX:29680101-29680298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:302-494
               
               
               Cow position:chrX:36068176-36067975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 171

               
               
               Conread position:302-496
               
               
               Cow position:chrX:43730063-43730262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 124

               
               
               Conread position:303-494
               
               
               Cow position:chrX:878222-878421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:305-442
               
               
               Cow position:chrX:34508702-34508564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:305-493
               
               
               Cow position:chrX:41884254-41884451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:305-494
               
               
               Cow position:chrX:8797407-8797215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:305-494
               
               
               Cow position:chrX:45175010-45174810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:307-494
               
               
               Cow position:chrX:11717627-11717826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:307-494
               
               
               Cow position:chrX:40557524-40557719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:308-442
               
               
               Cow position:chrX:23266569-23266435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:309-492
               
               
               Cow position:chrX:23092027-23091830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 186

               
               
               Conread position:310-494
               
               
               Cow position:chrX:31312182-31311989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:318-431
               
               
               Cow position:chrX:29501739-29501853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:323-442
               
               
               Cow position:chrX:11073051-11073171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:323-482
               
               
               Cow position:chrX:4615871-4616035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:324-492
               
               
               Cow position:chrX:37986364-37986191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 59

               
               
               Conread position:324-493
               
               
               Cow position:chrX:46429680-46429859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:324-494
               
               
               Cow position:chrX:25328476-25328644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:325-494
               
               
               Cow position:chrX:29121185-29121008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:329-494
               
               
               Cow position:chrX:37232541-37232375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 140

               
               
               Conread position:331-494
               
               
               Cow position:chrX:12082192-12082363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:332-494
               
               
               Cow position:chrX:42469810-42469984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:333-493
               
               
               Cow position:chrX:19690345-19690181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 135

               
               
               Conread position:335-487
               
               
               Cow position:chrX:19273579-19273744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):84, 0